Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:19289428-21389444

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183 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Armc3 2 19199302 to 19310241 110939 + protein coding gene armadillo repeat containing 3
Tssr415 2 19300514 to 19300573 59 + TSS region transcription start site region 415
Tssr16409 2 19300576 to 19300601 25 + TSS region transcription start site region 16409
Tssr16410 2 19344317 to 19344326 9 + TSS region transcription start site region 16410
4930447M23Rik 2 19344317 to 19351050 6733 + lincRNA gene RIKEN cDNA 4930447M23 gene
Tssr16411 2 19344820 to 19344858 38 + TSS region transcription start site region 16411
Cpgi11249 2 19344836 to 19345021 185 CpG island CpG island 11249
Tssr16412 2 19371413 to 19371449 36 + TSS region transcription start site region 16412
Msrb2 2 19371440 to 19394976 23536 + protein coding gene methionine sulfoxide reductase B2
Cpgi11250 2 19371610 to 19372024 414 CpG island CpG island 11250
Tssr16413 2 19371640 to 19371685 45 + TSS region transcription start site region 16413
Tssr16414 2 19381358 to 19381365 7 + TSS region transcription start site region 16414
Tssr416 2 19388890 to 19388904 14 - TSS region transcription start site region 416
Tssr22817 2 19388907 to 19388925 18 - TSS region transcription start site region 22817
Tssr22818 2 19388935 to 19388944 9 - TSS region transcription start site region 22818
Tssr417 2 19389044 to 19389058 14 + TSS region transcription start site region 417
Tssr418 2 19423188 to 19423195 7 - TSS region transcription start site region 418
Gm33940 2 19428046 to 19430443 2397 + lincRNA gene predicted gene, 33940
Gm13344 2 19429104 to 19431983 2879 - antisense lncRNA gene predicted gene 13344
Cpgi11251 2 19429930 to 19430372 442 CpG island CpG island 11251
Cpgi11252 2 19430716 to 19432487 1771 CpG island CpG island 11252
Tssr22819 2 19431850 to 19431870 20 - TSS region transcription start site region 22819
Tssr22820 2 19431994 to 19432026 32 - TSS region transcription start site region 22820
Ptf1aos 2 19441508 to 19446674 5166 - antisense lncRNA gene pancreas specific transcription factor 1a, opposite strand
Cpgi11253 2 19444950 to 19446949 1999 CpG island CpG island 11253
Tssr16415 2 19445632 to 19445651 19 + TSS region transcription start site region 16415
Ptf1a 2 19445663 to 19447501 1838 + protein coding gene pancreas specific transcription factor, 1a
Cpgi11254 2 19448342 to 19448745 403 CpG island CpG island 11254
1810010K12Rik 2 19451828 to 19454995 3167 + unclassified non-coding RNA gene RIKEN cDNA 1810010K12 gene
Cpgi11255 2 19451997 to 19452828 831 CpG island CpG island 11255
Tssr16416 2 19452449 to 19452456 7 + TSS region transcription start site region 16416
Tssr16417 2 19452468 to 19452494 26 + TSS region transcription start site region 16417
4921504E06Rik 2 19462837 to 19553910 91073 - protein coding gene RIKEN cDNA 4921504E06 gene
Tssr16418 2 19488555 to 19488573 18 + TSS region transcription start site region 16418
Gm13345 2 19509090 to 19509317 227 - pseudogene predicted gene 13345
Tssr22821 2 19547301 to 19547302 1 - TSS region transcription start site region 22821
Tssr22822 2 19553888 to 19553894 6 - TSS region transcription start site region 22822
Tssr22823 2 19553908 to 19553922 14 - TSS region transcription start site region 22823
Gm39764 2 19570098 to 19577472 7374 + lncRNA gene predicted gene, 39764
Gm13348 2 19634034 to 19636986 2952 - antisense lncRNA gene predicted gene 13348
Gm13343 2 19652244 to 19652348 104 - pseudogene predicted gene 13343
Gm3230 2 19655806 to 19657897 2091 - lncRNA gene predicted gene 3230
Cpgi11256 2 19657195 to 19659215 2020 CpG island CpG island 11256
Tssr16419 2 19657720 to 19657784 64 + TSS region transcription start site region 16419
Tssr16420 2 19657813 to 19657824 11 + TSS region transcription start site region 16420
Tssr16421 2 19658055 to 19658072 17 + TSS region transcription start site region 16421
Otud1 2 19658062 to 19660590 2528 + protein coding gene OTU domain containing 1
Tssr16422 2 19660045 to 19660079 34 + TSS region transcription start site region 16422
Gm13346 2 19676711 to 19686157 9446 - lincRNA gene predicted gene 13346
Gm13347 2 19677251 to 19678585 1334 + pseudogene predicted gene 13347
Gm24670 2 19691288 to 19691419 131 + snoRNA gene predicted gene, 24670
Cpgi11257 2 19694368 to 19694568 200 CpG island CpG island 11257
Tssr16423 2 19743589 to 19743593 4 + TSS region transcription start site region 16423
Gm44457 2 19888653 to 19888728 75 + miRNA gene predicted gene, 44457
Cpgi11258 2 19909369 to 19910444 1075 CpG island CpG island 11258
Etl4 2 19909763 to 20810535 900772 + protein coding gene enhancer trap locus 4
Tssr16424 2 19909769 to 19909785 16 + TSS region transcription start site region 16424
Tssr16425 2 19909797 to 19909829 32 + TSS region transcription start site region 16425
Tssr16426 2 19909832 to 19909843 11 + TSS region transcription start site region 16426
Tssr16427 2 19909996 to 19910007 11 + TSS region transcription start site region 16427
Gm25859 2 19934863 to 19934953 90 + snoRNA gene predicted gene, 25859
Gm13361 2 19965967 to 19967397 1430 - pseudogene predicted gene 13361
Gm13363 2 19992921 to 19993442 521 + pseudogene predicted gene 13363
Gm13360 2 20037096 to 20037894 798 - pseudogene predicted gene 13360
Tssr16428 2 20209653 to 20209674 21 + TSS region transcription start site region 16428
Gm13328 2 20235045 to 20236064 1019 - pseudogene predicted gene 13328
Gm23970 2 20280519 to 20280625 106 + snRNA gene predicted gene, 23970
D2Ucl3 2 20300574 to 20300684 110 DNA segment DNA segment, Chr 2, University College London 3
Gm17171 2 20300817 to 20324670 23853 - antisense lncRNA gene predicted gene 17171
Tssr22824 2 20339401 to 20339403 2 - TSS region transcription start site region 22824
Tssr22825 2 20339428 to 20339444 16 - TSS region transcription start site region 22825
Tssr16429 2 20339578 to 20339601 23 + TSS region transcription start site region 16429
Tssr22826 2 20341097 to 20341136 39 - TSS region transcription start site region 22826
Tssr16430 2 20355760 to 20355768 8 + TSS region transcription start site region 16430
Tssr16431 2 20370212 to 20370219 7 + TSS region transcription start site region 16431
Acigg1 2 20371737 to 20371737 0 QTL anti COL7 IgG1 antibody 1
Gm13335 2 20420570 to 20432934 12364 - antisense lncRNA gene predicted gene 13335
Cpgi11259 2 20519482 to 20520000 518 CpG island CpG island 11259
Tssr16432 2 20519593 to 20519651 58 + TSS region transcription start site region 16432
Tssr16433 2 20519776 to 20519835 59 + TSS region transcription start site region 16433
D2Ertd742e 2 20529477 to 20529727 250 DNA segment DNA segment, Chr 2, ERATO Doi 742, expressed
D2Mit364 2 20534431 to 20534555 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 364
8030447M02Rik 2 20536996 to 20539358 2362 unclassified gene RIKEN cDNA 8030447M02 gene
Tssr16434 2 20547458 to 20547470 12 + TSS region transcription start site region 16434
Tssr16435 2 20547497 to 20547514 17 + TSS region transcription start site region 16435
Tssr16436 2 20547961 to 20547972 11 + TSS region transcription start site region 16436
Tssr16437 2 20548317 to 20548321 4 + TSS region transcription start site region 16437
Tssr16438 2 20552101 to 20552105 4 + TSS region transcription start site region 16438
Gm27446 2 20559804 to 20559892 88 + unclassified non-coding RNA gene predicted gene, 27446
Tssr16439 2 20559880 to 20559905 25 + TSS region transcription start site region 16439
Tssr16440 2 20574715 to 20574719 4 + TSS region transcription start site region 16440
Tssr419 2 20598440 to 20598444 4 + TSS region transcription start site region 419
Tssr22827 2 20654600 to 20654606 6 - TSS region transcription start site region 22827
Tssr22828 2 20654682 to 20654692 10 - TSS region transcription start site region 22828
Tssr16441 2 20655151 to 20655158 7 + TSS region transcription start site region 16441
Tssr16442 2 20662130 to 20662153 23 + TSS region transcription start site region 16442
Tssr16443 2 20665852 to 20665885 33 + TSS region transcription start site region 16443
Tssr16444 2 20668083 to 20668094 11 + TSS region transcription start site region 16444
Tssr22829 2 20669288 to 20669295 7 - TSS region transcription start site region 22829
Tssr22830 2 20669304 to 20669319 15 - TSS region transcription start site region 22830
Tssr16445 2 20669685 to 20669704 19 + TSS region transcription start site region 16445
Tssr16446 2 20669711 to 20669726 15 + TSS region transcription start site region 16446
Tssr16447 2 20669837 to 20669846 9 + TSS region transcription start site region 16447
Tssr22831 2 20671058 to 20671088 30 - TSS region transcription start site region 22831
Tssr22832 2 20671684 to 20671709 25 - TSS region transcription start site region 22832
Tssr22833 2 20671711 to 20671725 14 - TSS region transcription start site region 22833
Tssr22834 2 20671745 to 20671751 6 - TSS region transcription start site region 22834
Tssr16448 2 20671836 to 20671854 18 + TSS region transcription start site region 16448
Tssr16449 2 20671864 to 20671875 11 + TSS region transcription start site region 16449
Tssr22835 2 20673359 to 20673369 10 - TSS region transcription start site region 22835
Gm13362 2 20709375 to 20713234 3859 - antisense lncRNA gene predicted gene 13362
Tssr16450 2 20722306 to 20722311 5 + TSS region transcription start site region 16450
Tssr16451 2 20722370 to 20722386 16 + TSS region transcription start site region 16451
Tssr16452 2 20722467 to 20722473 6 + TSS region transcription start site region 16452
Tssr16453 2 20724549 to 20724560 11 + TSS region transcription start site region 16453
Tssr16454 2 20737281 to 20737301 20 + TSS region transcription start site region 16454
Tssr16455 2 20737306 to 20737321 15 + TSS region transcription start site region 16455
Tssr16456 2 20737323 to 20737329 6 + TSS region transcription start site region 16456
Tssr16457 2 20737330 to 20737341 11 + TSS region transcription start site region 16457
Tssr16458 2 20765844 to 20765851 7 + TSS region transcription start site region 16458
Tssr16459 2 20796844 to 20796848 4 + TSS region transcription start site region 16459
Tssr22836 2 20804308 to 20804312 4 - TSS region transcription start site region 22836
Arhgap21 2 20847919 to 20968640 120721 - protein coding gene Rho GTPase activating protein 21
Tssr22837 2 20870031 to 20870045 14 - TSS region transcription start site region 22837
D2Mit6 2 20892967 to 20893101 134 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 6
Gm13380 2 20921860 to 20931389 9529 - sense intronic lncRNA gene predicted gene 13380
Tssr22838 2 20924901 to 20924905 4 - TSS region transcription start site region 22838
Tssr22839 2 20943389 to 20943412 23 - TSS region transcription start site region 22839
Tssr22840 2 20943413 to 20943424 11 - TSS region transcription start site region 22840
Tssr22841 2 20943425 to 20943442 17 - TSS region transcription start site region 22841
Tssr16460 2 20967348 to 20967365 17 + TSS region transcription start site region 16460
Cpgi11260 2 20967797 to 20970064 2267 CpG island CpG island 11260
Tssr22842 2 20968550 to 20968613 63 - TSS region transcription start site region 22842
Tssr16461 2 20968665 to 20968697 32 + TSS region transcription start site region 16461
Tssr16462 2 20968702 to 20968715 13 + TSS region transcription start site region 16462
Tssr16463 2 20968731 to 20968744 13 + TSS region transcription start site region 16463
Tssr22843 2 20968943 to 20968957 14 - TSS region transcription start site region 22843
Tssr22844 2 20968973 to 20968984 11 - TSS region transcription start site region 22844
Tssr22845 2 20968987 to 20968999 12 - TSS region transcription start site region 22845
Gm13375 2 20969054 to 20969997 943 + antisense lncRNA gene predicted gene 13375
Tssr16464 2 20969068 to 20969097 29 + TSS region transcription start site region 16464
Tssr22846 2 20969252 to 20969282 30 - TSS region transcription start site region 22846
Tssr22847 2 20969571 to 20969586 15 - TSS region transcription start site region 22847
Tssr16465 2 20970254 to 20970257 3 + TSS region transcription start site region 16465
D2Mit80 2 21006605 to 21006792 187 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 80
Tssr22848 2 21024160 to 21024166 6 - TSS region transcription start site region 22848
Gm13377 2 21044809 to 21139682 94873 - pseudogene predicted gene 13377
Gm13376 2 21097099 to 21120659 23560 + lincRNA gene predicted gene 13376
C130046B21Rik 2 21140917 to 21144205 3288 unclassified gene RIKEN cDNA C130046B21 gene
Cpgi11261 2 21141635 to 21142461 826 CpG island CpG island 11261
D2Mit69 2 21150234 to 21150411 177 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 69
Gm25368 2 21171083 to 21171213 130 + rRNA gene predicted gene, 25368
Tssr420 2 21178907 to 21178909 2 + TSS region transcription start site region 420
Enkur 2 21180731 to 21205365 24634 - protein coding gene enkurin, TRPC channel interacting protein
Gm23007 2 21197690 to 21197866 176 - unclassified non-coding RNA gene predicted gene, 23007
Tssr22849 2 21205310 to 21205324 14 - TSS region transcription start site region 22849
Tssr22850 2 21205342 to 21205371 29 - TSS region transcription start site region 22850
Tssr22851 2 21205375 to 21205384 9 - TSS region transcription start site region 22851
Cpgi11262 2 21205542 to 21206119 577 CpG island CpG island 11262
Tssr22852 2 21205630 to 21205639 9 - TSS region transcription start site region 22852
Tssr22853 2 21205643 to 21205677 34 - TSS region transcription start site region 22853
Tssr16466 2 21205719 to 21205781 62 + TSS region transcription start site region 16466
Thnsl1 2 21205724 to 21215009 9285 + protein coding gene threonine synthase-like 1 (bacterial)
Gm13378 2 21244105 to 21244440 335 + pseudogene predicted gene 13378
Tssr16467 2 21306894 to 21306896 2 + TSS region transcription start site region 16467
Gm13327 2 21341925 to 21369111 27186 - antisense lncRNA gene predicted gene 13327
Cpgi11263 2 21367336 to 21368105 769 CpG island CpG island 11263
Tssr16468 2 21367532 to 21367540 8 + TSS region transcription start site region 16468
Tssr16469 2 21367547 to 21367548 1 + TSS region transcription start site region 16469
Tssr16470 2 21367567 to 21367596 29 + TSS region transcription start site region 16470
Gpr158 2 21367567 to 21830544 462977 + protein coding gene G protein-coupled receptor 158
Tssr16471 2 21367598 to 21367617 19 + TSS region transcription start site region 16471
Tssr16472 2 21367821 to 21367870 49 + TSS region transcription start site region 16472
Cpgi11264 2 21368382 to 21369231 849 CpG island CpG island 11264
Egq1 2 119064359 to 20892967 -98171392 QTL early growth QTL 1
Estoq1 2 119064359 to 20892967 -98171392 QTL embryo survival total QTL 1
Splq1 2 119064359 to 20892967 -98171392 QTL spleen weight QTL 1
Lvrq1 2 119064359 to 20892967 -98171392 QTL liver weight QTL 1
W6q1 2 119064359 to 20892967 -98171392 QTL weight 6 weeks QTL 1
W3q1 2 119064359 to 20892967 -98171392 QTL weight 3 weeks QTL 1
Hrtq1 2 119064359 to 20892967 -98171392 QTL heart weight QTL 1
W10q9 2 119064359 to 20892967 -98171392 QTL weight 10 weeks QTL 9
Kidq1 2 119064359 to 20892967 -98171392 QTL kidney weight QTL 1