Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:18719249-19679263

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spag6 2 18694011 to 18749746 55735 + protein coding gene sperm associated antigen 6
Gm3363 2 18742709 to 18760862 18153 - lncRNA gene predicted gene 3363
Gm20539 2 18742715 to 18760862 18147 - unclassified non-coding RNA gene predicted gene 20539
Gm13333 2 18758984 to 18759754 770 + pseudogene predicted gene 13333
Cpgi11245 2 18766819 to 18767532 713 CpG island CpG island 11245
Tssr22798 2 18767053 to 18767066 13 - TSS region transcription start site region 22798
Carlr 2 18799245 to 18801818 2573 - lincRNA gene cardiac and apoptosis-related long non-coding RNA
Cpgi11246 2 18799741 to 18800921 1180 CpG island CpG island 11246
Tssr22799 2 18800014 to 18800045 31 - TSS region transcription start site region 22799
Tssr22800 2 18800047 to 18800063 16 - TSS region transcription start site region 22800
Pip4k2a 2 18842255 to 18998126 155871 - protein coding gene phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
Tssr22801 2 18844224 to 18844237 13 - TSS region transcription start site region 22801
Tssr22802 2 18867232 to 18867235 3 - TSS region transcription start site region 22802
Tssr22803 2 18868289 to 18868293 4 - TSS region transcription start site region 22803
Tssr22804 2 18872366 to 18872389 23 - TSS region transcription start site region 22804
Gm33534 2 18873384 to 18875174 1790 - lncRNA gene predicted gene, 33534
Tssr22805 2 18878456 to 18878460 4 - TSS region transcription start site region 22805
Tssr22806 2 18888296 to 18888302 6 - TSS region transcription start site region 22806
Tssr414 2 18893723 to 18893724 1 + TSS region transcription start site region 414
Tssr22807 2 18897963 to 18897974 11 - TSS region transcription start site region 22807
Tssr16399 2 18906347 to 18906352 5 + TSS region transcription start site region 16399
Tssr22808 2 18923874 to 18923880 6 - TSS region transcription start site region 22808
D2Mit512 2 18929912 to 18930063 151 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-512
Tssr22809 2 18952159 to 18952195 36 - TSS region transcription start site region 22809
A130001G05Rik 2 18965491 to 18968244 2753 unclassified gene RIKEN cDNA A130001G05 gene
Tssr22810 2 18970476 to 18970488 12 - TSS region transcription start site region 22810
D2Mit362 2 18979987 to 18980101 114 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 362
Cpgi11247 2 18996733 to 18998862 2129 CpG island CpG island 11247
Tssr16400 2 18997330 to 18997348 18 + TSS region transcription start site region 16400
Tssr22811 2 18998039 to 18998059 20 - TSS region transcription start site region 22811
Tssr22812 2 18998068 to 18998084 16 - TSS region transcription start site region 22812
Tssr22813 2 18998104 to 18998118 14 - TSS region transcription start site region 22813
Tssr22814 2 18998130 to 18998202 72 - TSS region transcription start site region 22814
Tssr22815 2 18998213 to 18998303 90 - TSS region transcription start site region 22815
Tssr16401 2 18998332 to 18998378 46 + TSS region transcription start site region 16401
4930426L09Rik 2 18998343 to 18999801 1458 + unclassified gene RIKEN cDNA 4930426L09 gene
Tssr16402 2 18998388 to 18998395 7 + TSS region transcription start site region 16402
Gm33592 2 19006817 to 19016919 10102 + lncRNA gene predicted gene, 33592
Tssr16403 2 19007841 to 19007850 9 + TSS region transcription start site region 16403
Tssr16404 2 19012230 to 19012234 4 + TSS region transcription start site region 16404
Tssr22816 2 19048353 to 19048381 28 - TSS region transcription start site region 22816
Tssr16405 2 19050048 to 19050078 30 + TSS region transcription start site region 16405
Gm13332 2 19101704 to 19103098 1394 - pseudogene predicted gene 13332
Tssr16406 2 19166952 to 19166958 6 + TSS region transcription start site region 16406
Cpgi11248 2 19199222 to 19199515 293 CpG island CpG island 11248
Tssr16407 2 19199249 to 19199263 14 + TSS region transcription start site region 16407
Tssr16408 2 19199266 to 19199316 50 + TSS region transcription start site region 16408
Armc3 2 19199302 to 19310241 110939 + protein coding gene armadillo repeat containing 3
Tssr415 2 19300514 to 19300573 59 + TSS region transcription start site region 415
Tssr16409 2 19300576 to 19300601 25 + TSS region transcription start site region 16409
Tssr16410 2 19344317 to 19344326 9 + TSS region transcription start site region 16410
4930447M23Rik 2 19344317 to 19351050 6733 + lincRNA gene RIKEN cDNA 4930447M23 gene
Tssr16411 2 19344820 to 19344858 38 + TSS region transcription start site region 16411
Cpgi11249 2 19344836 to 19345021 185 CpG island CpG island 11249
Tssr16412 2 19371413 to 19371449 36 + TSS region transcription start site region 16412
Msrb2 2 19371440 to 19394976 23536 + protein coding gene methionine sulfoxide reductase B2
Cpgi11250 2 19371610 to 19372024 414 CpG island CpG island 11250
Tssr16413 2 19371640 to 19371685 45 + TSS region transcription start site region 16413
Tssr16414 2 19381358 to 19381365 7 + TSS region transcription start site region 16414
Tssr416 2 19388890 to 19388904 14 - TSS region transcription start site region 416
Tssr22817 2 19388907 to 19388925 18 - TSS region transcription start site region 22817
Tssr22818 2 19388935 to 19388944 9 - TSS region transcription start site region 22818
Tssr417 2 19389044 to 19389058 14 + TSS region transcription start site region 417
Tssr418 2 19423188 to 19423195 7 - TSS region transcription start site region 418
Gm33940 2 19428046 to 19430443 2397 + lincRNA gene predicted gene, 33940
Gm13344 2 19429104 to 19431983 2879 - antisense lncRNA gene predicted gene 13344
Cpgi11251 2 19429930 to 19430372 442 CpG island CpG island 11251
Cpgi11252 2 19430716 to 19432487 1771 CpG island CpG island 11252
Tssr22819 2 19431850 to 19431870 20 - TSS region transcription start site region 22819
Tssr22820 2 19431994 to 19432026 32 - TSS region transcription start site region 22820
Ptf1aos 2 19441508 to 19446674 5166 - antisense lncRNA gene pancreas specific transcription factor 1a, opposite strand
Cpgi11253 2 19444950 to 19446949 1999 CpG island CpG island 11253
Tssr16415 2 19445632 to 19445651 19 + TSS region transcription start site region 16415
Ptf1a 2 19445663 to 19447501 1838 + protein coding gene pancreas specific transcription factor, 1a
Cpgi11254 2 19448342 to 19448745 403 CpG island CpG island 11254
1810010K12Rik 2 19451828 to 19454995 3167 + unclassified non-coding RNA gene RIKEN cDNA 1810010K12 gene
Cpgi11255 2 19451997 to 19452828 831 CpG island CpG island 11255
Tssr16416 2 19452449 to 19452456 7 + TSS region transcription start site region 16416
Tssr16417 2 19452468 to 19452494 26 + TSS region transcription start site region 16417
4921504E06Rik 2 19462837 to 19553910 91073 - protein coding gene RIKEN cDNA 4921504E06 gene
Tssr16418 2 19488555 to 19488573 18 + TSS region transcription start site region 16418
Gm13345 2 19509090 to 19509317 227 - pseudogene predicted gene 13345
Tssr22821 2 19547301 to 19547302 1 - TSS region transcription start site region 22821
Tssr22822 2 19553888 to 19553894 6 - TSS region transcription start site region 22822
Tssr22823 2 19553908 to 19553922 14 - TSS region transcription start site region 22823
Gm39764 2 19570098 to 19577472 7374 + lncRNA gene predicted gene, 39764
Gm13348 2 19634034 to 19636986 2952 - antisense lncRNA gene predicted gene 13348
Gm13343 2 19652244 to 19652348 104 - pseudogene predicted gene 13343
Gm3230 2 19655806 to 19657897 2091 - lncRNA gene predicted gene 3230
Cpgi11256 2 19657195 to 19659215 2020 CpG island CpG island 11256
Tssr16419 2 19657720 to 19657784 64 + TSS region transcription start site region 16419
Tssr16420 2 19657813 to 19657824 11 + TSS region transcription start site region 16420
Tssr16421 2 19658055 to 19658072 17 + TSS region transcription start site region 16421
Otud1 2 19658062 to 19660590 2528 + protein coding gene OTU domain containing 1
Tssr16422 2 19660045 to 19660079 34 + TSS region transcription start site region 16422
Gm13346 2 19676711 to 19686157 9446 - lincRNA gene predicted gene 13346
Gm13347 2 19677251 to 19678585 1334 + pseudogene predicted gene 13347