Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:18694245-18906818

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11243 2 18693974 to 18695004 1030 CpG island CpG island 11243
Spag6 2 18694011 to 18749746 55735 + protein coding gene sperm associated antigen 6
Cpgi11244 2 18698519 to 18699524 1005 CpG island CpG island 11244
Tssr22797 2 18698872 to 18698885 13 - TSS region transcription start site region 22797
Tssr16394 2 18698970 to 18698977 7 + TSS region transcription start site region 16394
Tssr412 2 18698981 to 18698985 4 + TSS region transcription start site region 412
Tssr16395 2 18698987 to 18698997 10 + TSS region transcription start site region 16395
Tssr16396 2 18698998 to 18699018 20 + TSS region transcription start site region 16396
Tssr16397 2 18699030 to 18699037 7 + TSS region transcription start site region 16397
Tssr413 2 18699041 to 18699042 1 + TSS region transcription start site region 413
Tssr16398 2 18699052 to 18699057 5 + TSS region transcription start site region 16398
Gm3363 2 18742709 to 18760862 18153 - lncRNA gene predicted gene 3363
Gm20539 2 18742715 to 18760862 18147 - unclassified non-coding RNA gene predicted gene 20539
Gm13333 2 18758984 to 18759754 770 + pseudogene predicted gene 13333
Cpgi11245 2 18766819 to 18767532 713 CpG island CpG island 11245
Tssr22798 2 18767053 to 18767066 13 - TSS region transcription start site region 22798
Carlr 2 18799245 to 18801818 2573 - lincRNA gene cardiac and apoptosis-related long non-coding RNA
Cpgi11246 2 18799741 to 18800921 1180 CpG island CpG island 11246
Tssr22799 2 18800014 to 18800045 31 - TSS region transcription start site region 22799
Tssr22800 2 18800047 to 18800063 16 - TSS region transcription start site region 22800
Pip4k2a 2 18842255 to 18998126 155871 - protein coding gene phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
Tssr22801 2 18844224 to 18844237 13 - TSS region transcription start site region 22801
Tssr22802 2 18867232 to 18867235 3 - TSS region transcription start site region 22802
Tssr22803 2 18868289 to 18868293 4 - TSS region transcription start site region 22803
Tssr22804 2 18872366 to 18872389 23 - TSS region transcription start site region 22804
Gm33534 2 18873384 to 18875174 1790 - lncRNA gene predicted gene, 33534
Tssr22805 2 18878456 to 18878460 4 - TSS region transcription start site region 22805
Tssr22806 2 18888296 to 18888302 6 - TSS region transcription start site region 22806
Tssr414 2 18893723 to 18893724 1 + TSS region transcription start site region 414
Tssr22807 2 18897963 to 18897974 11 - TSS region transcription start site region 22807
Tssr16399 2 18906347 to 18906352 5 + TSS region transcription start site region 16399