Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:18391440-20374976

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168 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnajc1 2 18206333 to 18392853 186520 - protein coding gene DnaJ heat shock protein family (Hsp40) member C1
Cpgi11236 2 18392065 to 18393036 971 CpG island CpG island 11236
Tssr22792 2 18392662 to 18392665 3 - TSS region transcription start site region 22792
Tssr22793 2 18392694 to 18392699 5 - TSS region transcription start site region 22793
Tssr22794 2 18392715 to 18392716 1 - TSS region transcription start site region 22794
Tssr22795 2 18392721 to 18392726 5 - TSS region transcription start site region 22795
Tssr22796 2 18392736 to 18392838 102 - TSS region transcription start site region 22796
Tssr16383 2 18497487 to 18497491 4 + TSS region transcription start site region 16383
Tssr16384 2 18567720 to 18567722 2 + TSS region transcription start site region 16384
Gm13353 2 18568126 to 18568198 72 + pseudogene predicted gene 13353
Mdq8 2 18571206 to 18571206 0 QTL mammary ductal QTL 8
n-TNgtt9 2 18587044 to 18587117 73 - tRNA gene nuclear encoded tRNA asparagine 9 (anticodon GTT)
Cpgi11237 2 18587399 to 18587721 322 CpG island CpG island 11237
D2Mit464 2 18595710 to 18595834 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 464
Cpgi11238 2 18608351 to 18610001 1650 CpG island CpG island 11238
Gm13355 2 18641786 to 18642102 316 - pseudogene predicted gene 13355
Gm13352 2 18649085 to 18649346 261 - pseudogene predicted gene 13352
Gm33355 2 18668574 to 18672401 3827 - lncRNA gene predicted gene, 33355
Cpgi11239 2 18671872 to 18673094 1222 CpG island CpG island 11239
Tssr411 2 18672201 to 18672268 67 + TSS region transcription start site region 411
Tssr16385 2 18672417 to 18672482 65 + TSS region transcription start site region 16385
Commd3 2 18672462 to 18676216 3754 + protein coding gene COMM domain containing 3
Tssr16386 2 18672493 to 18672504 11 + TSS region transcription start site region 16386
Cpgi11240 2 18676104 to 18678241 2137 CpG island CpG island 11240
Tssr16387 2 18676827 to 18676885 58 + TSS region transcription start site region 16387
Tssr16388 2 18676952 to 18676968 16 + TSS region transcription start site region 16388
Tssr16389 2 18677002 to 18677053 51 + TSS region transcription start site region 16389
Bmi1 2 18677018 to 18686629 9611 + protein coding gene Bmi1 polycomb ring finger oncogene
Tssr16390 2 18677055 to 18677066 11 + TSS region transcription start site region 16390
Tssr16391 2 18677078 to 18677101 23 + TSS region transcription start site region 16391
Tssr16392 2 18677105 to 18677118 13 + TSS region transcription start site region 16392
Tssr16393 2 18677133 to 18677214 81 + TSS region transcription start site region 16393
Cpgi11241 2 18681021 to 18681342 321 CpG island CpG island 11241
Gm46725 2 18687502 to 18690731 3229 - protein coding gene predicted gene, 46725
Cpgi11242 2 18688667 to 18690700 2033 CpG island CpG island 11242
Cpgi11243 2 18693974 to 18695004 1030 CpG island CpG island 11243
Spag6 2 18694011 to 18749746 55735 + protein coding gene sperm associated antigen 6
Cpgi11244 2 18698519 to 18699524 1005 CpG island CpG island 11244
Tssr22797 2 18698872 to 18698885 13 - TSS region transcription start site region 22797
Tssr16394 2 18698970 to 18698977 7 + TSS region transcription start site region 16394
Tssr412 2 18698981 to 18698985 4 + TSS region transcription start site region 412
Tssr16395 2 18698987 to 18698997 10 + TSS region transcription start site region 16395
Tssr16396 2 18698998 to 18699018 20 + TSS region transcription start site region 16396
Tssr16397 2 18699030 to 18699037 7 + TSS region transcription start site region 16397
Tssr413 2 18699041 to 18699042 1 + TSS region transcription start site region 413
Tssr16398 2 18699052 to 18699057 5 + TSS region transcription start site region 16398
Gm3363 2 18742709 to 18760862 18153 - lncRNA gene predicted gene 3363
Gm20539 2 18742715 to 18760862 18147 - unclassified non-coding RNA gene predicted gene 20539
Gm13333 2 18758984 to 18759754 770 + pseudogene predicted gene 13333
Cpgi11245 2 18766819 to 18767532 713 CpG island CpG island 11245
Tssr22798 2 18767053 to 18767066 13 - TSS region transcription start site region 22798
Carlr 2 18799245 to 18801818 2573 - lincRNA gene cardiac and apoptosis-related long non-coding RNA
Cpgi11246 2 18799741 to 18800921 1180 CpG island CpG island 11246
Tssr22799 2 18800014 to 18800045 31 - TSS region transcription start site region 22799
Tssr22800 2 18800047 to 18800063 16 - TSS region transcription start site region 22800
Pip4k2a 2 18842255 to 18998126 155871 - protein coding gene phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
Tssr22801 2 18844224 to 18844237 13 - TSS region transcription start site region 22801
Tssr22802 2 18867232 to 18867235 3 - TSS region transcription start site region 22802
Tssr22803 2 18868289 to 18868293 4 - TSS region transcription start site region 22803
Tssr22804 2 18872366 to 18872389 23 - TSS region transcription start site region 22804
Gm33534 2 18873384 to 18875174 1790 - lncRNA gene predicted gene, 33534
Tssr22805 2 18878456 to 18878460 4 - TSS region transcription start site region 22805
Tssr22806 2 18888296 to 18888302 6 - TSS region transcription start site region 22806
Tssr414 2 18893723 to 18893724 1 + TSS region transcription start site region 414
Tssr22807 2 18897963 to 18897974 11 - TSS region transcription start site region 22807
Tssr16399 2 18906347 to 18906352 5 + TSS region transcription start site region 16399
Tssr22808 2 18923874 to 18923880 6 - TSS region transcription start site region 22808
D2Mit512 2 18929912 to 18930063 151 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-512
Tssr22809 2 18952159 to 18952195 36 - TSS region transcription start site region 22809
A130001G05Rik 2 18965491 to 18968244 2753 unclassified gene RIKEN cDNA A130001G05 gene
Tssr22810 2 18970476 to 18970488 12 - TSS region transcription start site region 22810
D2Mit362 2 18979987 to 18980101 114 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 362
Cpgi11247 2 18996733 to 18998862 2129 CpG island CpG island 11247
Tssr16400 2 18997330 to 18997348 18 + TSS region transcription start site region 16400
Tssr22811 2 18998039 to 18998059 20 - TSS region transcription start site region 22811
Tssr22812 2 18998068 to 18998084 16 - TSS region transcription start site region 22812
Tssr22813 2 18998104 to 18998118 14 - TSS region transcription start site region 22813
Tssr22814 2 18998130 to 18998202 72 - TSS region transcription start site region 22814
Tssr22815 2 18998213 to 18998303 90 - TSS region transcription start site region 22815
Tssr16401 2 18998332 to 18998378 46 + TSS region transcription start site region 16401
4930426L09Rik 2 18998343 to 18999801 1458 + unclassified gene RIKEN cDNA 4930426L09 gene
Tssr16402 2 18998388 to 18998395 7 + TSS region transcription start site region 16402
Gm33592 2 19006817 to 19016919 10102 + lncRNA gene predicted gene, 33592
Tssr16403 2 19007841 to 19007850 9 + TSS region transcription start site region 16403
Tssr16404 2 19012230 to 19012234 4 + TSS region transcription start site region 16404
Tssr22816 2 19048353 to 19048381 28 - TSS region transcription start site region 22816
Tssr16405 2 19050048 to 19050078 30 + TSS region transcription start site region 16405
Gm13332 2 19101704 to 19103098 1394 - pseudogene predicted gene 13332
Tssr16406 2 19166952 to 19166958 6 + TSS region transcription start site region 16406
Cpgi11248 2 19199222 to 19199515 293 CpG island CpG island 11248
Tssr16407 2 19199249 to 19199263 14 + TSS region transcription start site region 16407
Tssr16408 2 19199266 to 19199316 50 + TSS region transcription start site region 16408
Armc3 2 19199302 to 19310241 110939 + protein coding gene armadillo repeat containing 3
Tssr415 2 19300514 to 19300573 59 + TSS region transcription start site region 415
Tssr16409 2 19300576 to 19300601 25 + TSS region transcription start site region 16409
Tssr16410 2 19344317 to 19344326 9 + TSS region transcription start site region 16410
4930447M23Rik 2 19344317 to 19351050 6733 + lincRNA gene RIKEN cDNA 4930447M23 gene
Tssr16411 2 19344820 to 19344858 38 + TSS region transcription start site region 16411
Cpgi11249 2 19344836 to 19345021 185 CpG island CpG island 11249
Tssr16412 2 19371413 to 19371449 36 + TSS region transcription start site region 16412
Msrb2 2 19371440 to 19394976 23536 + protein coding gene methionine sulfoxide reductase B2
Cpgi11250 2 19371610 to 19372024 414 CpG island CpG island 11250
Tssr16413 2 19371640 to 19371685 45 + TSS region transcription start site region 16413
Tssr16414 2 19381358 to 19381365 7 + TSS region transcription start site region 16414
Tssr416 2 19388890 to 19388904 14 - TSS region transcription start site region 416
Tssr22817 2 19388907 to 19388925 18 - TSS region transcription start site region 22817
Tssr22818 2 19388935 to 19388944 9 - TSS region transcription start site region 22818
Tssr417 2 19389044 to 19389058 14 + TSS region transcription start site region 417
Tssr418 2 19423188 to 19423195 7 - TSS region transcription start site region 418
Gm33940 2 19428046 to 19430443 2397 + lincRNA gene predicted gene, 33940
Gm13344 2 19429104 to 19431983 2879 - antisense lncRNA gene predicted gene 13344
Cpgi11251 2 19429930 to 19430372 442 CpG island CpG island 11251
Cpgi11252 2 19430716 to 19432487 1771 CpG island CpG island 11252
Tssr22819 2 19431850 to 19431870 20 - TSS region transcription start site region 22819
Tssr22820 2 19431994 to 19432026 32 - TSS region transcription start site region 22820
Ptf1aos 2 19441508 to 19446674 5166 - antisense lncRNA gene pancreas specific transcription factor 1a, opposite strand
Cpgi11253 2 19444950 to 19446949 1999 CpG island CpG island 11253
Tssr16415 2 19445632 to 19445651 19 + TSS region transcription start site region 16415
Ptf1a 2 19445663 to 19447501 1838 + protein coding gene pancreas specific transcription factor, 1a
Cpgi11254 2 19448342 to 19448745 403 CpG island CpG island 11254
1810010K12Rik 2 19451828 to 19454995 3167 + unclassified non-coding RNA gene RIKEN cDNA 1810010K12 gene
Cpgi11255 2 19451997 to 19452828 831 CpG island CpG island 11255
Tssr16416 2 19452449 to 19452456 7 + TSS region transcription start site region 16416
Tssr16417 2 19452468 to 19452494 26 + TSS region transcription start site region 16417
4921504E06Rik 2 19462837 to 19553910 91073 - protein coding gene RIKEN cDNA 4921504E06 gene
Tssr16418 2 19488555 to 19488573 18 + TSS region transcription start site region 16418
Gm13345 2 19509090 to 19509317 227 - pseudogene predicted gene 13345
Tssr22821 2 19547301 to 19547302 1 - TSS region transcription start site region 22821
Tssr22822 2 19553888 to 19553894 6 - TSS region transcription start site region 22822
Tssr22823 2 19553908 to 19553922 14 - TSS region transcription start site region 22823
Gm39764 2 19570098 to 19577472 7374 + lncRNA gene predicted gene, 39764
Gm13348 2 19634034 to 19636986 2952 - antisense lncRNA gene predicted gene 13348
Gm13343 2 19652244 to 19652348 104 - pseudogene predicted gene 13343
Gm3230 2 19655806 to 19657897 2091 - lncRNA gene predicted gene 3230
Cpgi11256 2 19657195 to 19659215 2020 CpG island CpG island 11256
Tssr16419 2 19657720 to 19657784 64 + TSS region transcription start site region 16419
Tssr16420 2 19657813 to 19657824 11 + TSS region transcription start site region 16420
Tssr16421 2 19658055 to 19658072 17 + TSS region transcription start site region 16421
Otud1 2 19658062 to 19660590 2528 + protein coding gene OTU domain containing 1
Tssr16422 2 19660045 to 19660079 34 + TSS region transcription start site region 16422
Gm13346 2 19676711 to 19686157 9446 - lincRNA gene predicted gene 13346
Gm13347 2 19677251 to 19678585 1334 + pseudogene predicted gene 13347
Gm24670 2 19691288 to 19691419 131 + snoRNA gene predicted gene, 24670
Cpgi11257 2 19694368 to 19694568 200 CpG island CpG island 11257
Tssr16423 2 19743589 to 19743593 4 + TSS region transcription start site region 16423
Gm44457 2 19888653 to 19888728 75 + miRNA gene predicted gene, 44457
Cpgi11258 2 19909369 to 19910444 1075 CpG island CpG island 11258
Etl4 2 19909763 to 20810535 900772 + protein coding gene enhancer trap locus 4
Tssr16424 2 19909769 to 19909785 16 + TSS region transcription start site region 16424
Tssr16425 2 19909797 to 19909829 32 + TSS region transcription start site region 16425
Tssr16426 2 19909832 to 19909843 11 + TSS region transcription start site region 16426
Tssr16427 2 19909996 to 19910007 11 + TSS region transcription start site region 16427
Gm25859 2 19934863 to 19934953 90 + snoRNA gene predicted gene, 25859
Gm13361 2 19965967 to 19967397 1430 - pseudogene predicted gene 13361
Gm13363 2 19992921 to 19993442 521 + pseudogene predicted gene 13363
Gm13360 2 20037096 to 20037894 798 - pseudogene predicted gene 13360
Tssr16428 2 20209653 to 20209674 21 + TSS region transcription start site region 16428
Gm13328 2 20235045 to 20236064 1019 - pseudogene predicted gene 13328
Gm23970 2 20280519 to 20280625 106 + snRNA gene predicted gene, 23970
D2Ucl3 2 20300574 to 20300684 110 DNA segment DNA segment, Chr 2, University College London 3
Gm17171 2 20300817 to 20324670 23853 - antisense lncRNA gene predicted gene 17171
Tssr22824 2 20339401 to 20339403 2 - TSS region transcription start site region 22824
Tssr22825 2 20339428 to 20339444 16 - TSS region transcription start site region 22825
Tssr16429 2 20339578 to 20339601 23 + TSS region transcription start site region 16429
Tssr22826 2 20341097 to 20341136 39 - TSS region transcription start site region 22826
Tssr16430 2 20355760 to 20355768 8 + TSS region transcription start site region 16430
Tssr16431 2 20370212 to 20370219 7 + TSS region transcription start site region 16431
Acigg1 2 20371737 to 20371737 0 QTL anti COL7 IgG1 antibody 1