Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:18307487-18687491

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnajc1 2 18206333 to 18392853 186520 - protein coding gene DnaJ heat shock protein family (Hsp40) member C1
Tssr16382 2 18307934 to 18307981 47 + TSS region transcription start site region 16382
Tssr22788 2 18308804 to 18308818 14 - TSS region transcription start site region 22788
Tssr22789 2 18316942 to 18316976 34 - TSS region transcription start site region 22789
Gm13349 2 18338579 to 18338989 410 - pseudogene predicted gene 13349
Tssr22790 2 18348966 to 18348970 4 - TSS region transcription start site region 22790
Tssr22791 2 18390833 to 18390861 28 - TSS region transcription start site region 22791
Cpgi11236 2 18392065 to 18393036 971 CpG island CpG island 11236
Tssr22792 2 18392662 to 18392665 3 - TSS region transcription start site region 22792
Tssr22793 2 18392694 to 18392699 5 - TSS region transcription start site region 22793
Tssr22794 2 18392715 to 18392716 1 - TSS region transcription start site region 22794
Tssr22795 2 18392721 to 18392726 5 - TSS region transcription start site region 22795
Tssr22796 2 18392736 to 18392838 102 - TSS region transcription start site region 22796
Tssr16383 2 18497487 to 18497491 4 + TSS region transcription start site region 16383
Tssr16384 2 18567720 to 18567722 2 + TSS region transcription start site region 16384
Gm13353 2 18568126 to 18568198 72 + pseudogene predicted gene 13353
Mdq8 2 18571206 to 18571206 0 QTL mammary ductal QTL 8
n-TNgtt9 2 18587044 to 18587117 73 - tRNA gene nuclear encoded tRNA asparagine 9 (anticodon GTT)
Cpgi11237 2 18587399 to 18587721 322 CpG island CpG island 11237
D2Mit464 2 18595710 to 18595834 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 464
Cpgi11238 2 18608351 to 18610001 1650 CpG island CpG island 11238
Gm13355 2 18641786 to 18642102 316 - pseudogene predicted gene 13355
Gm13352 2 18649085 to 18649346 261 - pseudogene predicted gene 13352
Gm33355 2 18668574 to 18672401 3827 - lncRNA gene predicted gene, 33355
Cpgi11239 2 18671872 to 18673094 1222 CpG island CpG island 11239
Tssr411 2 18672201 to 18672268 67 + TSS region transcription start site region 411
Tssr16385 2 18672417 to 18672482 65 + TSS region transcription start site region 16385
Commd3 2 18672462 to 18676216 3754 + protein coding gene COMM domain containing 3
Tssr16386 2 18672493 to 18672504 11 + TSS region transcription start site region 16386
Cpgi11240 2 18676104 to 18678241 2137 CpG island CpG island 11240
Tssr16387 2 18676827 to 18676885 58 + TSS region transcription start site region 16387
Tssr16388 2 18676952 to 18676968 16 + TSS region transcription start site region 16388
Tssr16389 2 18677002 to 18677053 51 + TSS region transcription start site region 16389
Bmi1 2 18677018 to 18686629 9611 + protein coding gene Bmi1 polycomb ring finger oncogene
Tssr16390 2 18677055 to 18677066 11 + TSS region transcription start site region 16390
Tssr16391 2 18677078 to 18677101 23 + TSS region transcription start site region 16391
Tssr16392 2 18677105 to 18677118 13 + TSS region transcription start site region 16392
Tssr16393 2 18677133 to 18677214 81 + TSS region transcription start site region 16393
Cpgi11241 2 18681021 to 18681342 321 CpG island CpG island 11241