Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:181497143-181688200

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi12928 2 181496853 to 181497747 894 CpG island CpG island 12928
Tpd52l2 2 181497142 to 181517966 20824 + protein coding gene tumor protein D52-like 2
Tssr22313 2 181497169 to 181497216 47 + TSS region transcription start site region 22313
Tssr22314 2 181497223 to 181497244 21 + TSS region transcription start site region 22314
Tssr28211 2 181498772 to 181498779 7 - TSS region transcription start site region 28211
Tssr22315 2 181506702 to 181506706 4 + TSS region transcription start site region 22315
Tssr22316 2 181511224 to 181511231 7 + TSS region transcription start site region 22316
Gm25184 2 181512550 to 181512712 162 + snRNA gene predicted gene, 25184
Cpgi12929 2 181520178 to 181521251 1073 CpG island CpG island 12929
Dnajc5 2 181520180 to 181552886 32706 + protein coding gene DnaJ heat shock protein family (Hsp40) member C5
Tssr22317 2 181520513 to 181520531 18 + TSS region transcription start site region 22317
Tssr22318 2 181520533 to 181520563 30 + TSS region transcription start site region 22318
Tssr22319 2 181520582 to 181520593 11 + TSS region transcription start site region 22319
Tssr22320 2 181525764 to 181525808 44 + TSS region transcription start site region 22320
Tssr22321 2 181540489 to 181540494 5 + TSS region transcription start site region 22321
Tssr22322 2 181543425 to 181543432 7 + TSS region transcription start site region 22322
Tssr810 2 181546415 to 181546427 12 + TSS region transcription start site region 810
Tssr22323 2 181550377 to 181550388 11 + TSS region transcription start site region 22323
Tssr22324 2 181557349 to 181557360 11 + TSS region transcription start site region 22324
Uckl1 2 181569152 to 181581973 12821 - protein coding gene uridine-cytidine kinase 1-like 1
Tssr22325 2 181578362 to 181578374 12 + TSS region transcription start site region 22325
Uckl1os 2 181578480 to 181585115 6635 + antisense lncRNA gene uridine-cytidine kinase 1-like 1, opposite strand
Tssr28212 2 181578906 to 181578946 40 - TSS region transcription start site region 28212
Tssr22326 2 181579315 to 181579339 24 + TSS region transcription start site region 22326
Tssr22327 2 181579356 to 181579367 11 + TSS region transcription start site region 22327
Tssr22328 2 181579508 to 181579525 17 + TSS region transcription start site region 22328
Tssr22329 2 181579537 to 181579553 16 + TSS region transcription start site region 22329
Tssr22330 2 181579562 to 181579567 5 + TSS region transcription start site region 22330
Cpgi12930 2 181581094 to 181582148 1054 CpG island CpG island 12930
Tssr28213 2 181581130 to 181581169 39 - TSS region transcription start site region 28213
Tssr28214 2 181581900 to 181581911 11 - TSS region transcription start site region 28214
Tssr28215 2 181581974 to 181581990 16 - TSS region transcription start site region 28215
Tssr28216 2 181581996 to 181582007 11 - TSS region transcription start site region 28216
Zfp512b 2 181582103 to 181592803 10700 - protein coding gene zinc finger protein 512B
Mir7006 2 181587900 to 181587968 68 - miRNA gene microRNA 7006
Cpgi12931 2 181592143 to 181593200 1057 CpG island CpG island 12931
Tssr28217 2 181592698 to 181592727 29 - TSS region transcription start site region 28217
Tssr28218 2 181592733 to 181592790 57 - TSS region transcription start site region 28218
Samd10 2 181595218 to 181599212 3994 - protein coding gene sterile alpha motif domain containing 10
Tssr28219 2 181597581 to 181597609 28 - TSS region transcription start site region 28219
Cpgi12932 2 181598527 to 181599441 914 CpG island CpG island 12932
Tssr28220 2 181598960 to 181598980 20 - TSS region transcription start site region 28220
Tssr28221 2 181599031 to 181599042 11 - TSS region transcription start site region 28221
Tssr28222 2 181599128 to 181599235 107 - TSS region transcription start site region 28222
Tssr28223 2 181599243 to 181599261 18 - TSS region transcription start site region 28223
Tssr28224 2 181599266 to 181599280 14 - TSS region transcription start site region 28224
Cpgi12933 2 181600875 to 181601604 729 CpG island CpG island 12933
Prpf6 2 181601319 to 181655661 54342 + protein coding gene pre-mRNA splicing factor 6
Tssr22331 2 181601328 to 181601344 16 + TSS region transcription start site region 22331
Tssr22332 2 181601347 to 181601415 68 + TSS region transcription start site region 22332
Tssr22333 2 181628702 to 181628705 3 + TSS region transcription start site region 22333
Tssr22334 2 181650461 to 181650466 5 + TSS region transcription start site region 22334
Tssr22335 2 181656879 to 181656900 21 + TSS region transcription start site region 22335
Gm29797 2 181657034 to 181659467 2433 + protein coding gene predicted gene, 29797
Cpgi12934 2 181659105 to 181659755 650 CpG island CpG island 12934
Gm25879 2 181662306 to 181662412 106 + snRNA gene predicted gene, 25879
Sox18 2 181669837 to 181671640 1803 - protein coding gene SRY (sex determining region Y)-box 18
Cpgi12935 2 181670143 to 181671908 1765 CpG island CpG island 12935
Tssr28225 2 181671604 to 181671605 1 - TSS region transcription start site region 28225
Tssr28226 2 181671622 to 181671645 23 - TSS region transcription start site region 28226
Cpgi12936 2 181675493 to 181675799 306 CpG island CpG island 12936
Cpgi12937 2 181679880 to 181680896 1016 CpG island CpG island 12937
Tssr22336 2 181680284 to 181680332 48 + TSS region transcription start site region 22336
Tcea2 2 181680310 to 181688071 7761 + protein coding gene transcription elongation factor A (SII), 2
Tssr811 2 181680334 to 181680341 7 + TSS region transcription start site region 811