Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:181381823-182413712

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vacq1 2 178800545 to 181873487 3072942 QTL voluntary alcohol consumption QTL 1
Lfibq19 2 181090877 to 181807525 716648 QTL liver fibrosis QTL 19
Lime1 2 181381235 to 181383628 2393 + protein coding gene Lck interacting transmembrane adaptor 1
Slc2a4rg-ps 2 181384250 to 181387586 3336 + pseudogene Slc2a4 regulator, pseudogene
Tssr22311 2 181385760 to 181385762 2 + TSS region transcription start site region 22311
Tssr809 2 181385903 to 181385907 4 + TSS region transcription start site region 809
Zbtb46 2 181387762 to 181459426 71664 - protein coding gene zinc finger and BTB domain containing 46
B930049G02Rik 2 181405970 to 181409894 3924 unclassified gene RIKEN cDNA B930049G02 gene
Gm22708 2 181425935 to 181426037 102 - snRNA gene predicted gene, 22708
Cpgi12925 2 181458175 to 181460623 2448 CpG island CpG island 12925
Tssr28207 2 181459364 to 181459439 75 - TSS region transcription start site region 28207
Tssr28208 2 181483586 to 181483652 66 - TSS region transcription start site region 28208
Tssr28209 2 181492963 to 181493004 41 - TSS region transcription start site region 28209
Tssr22312 2 181493185 to 181493220 35 + TSS region transcription start site region 22312
Abhd16b 2 181493206 to 181494980 1774 + protein coding gene abhydrolase domain containing 16B
Cpgi12926 2 181493516 to 181493855 339 CpG island CpG island 12926
Cpgi12927 2 181494299 to 181494640 341 CpG island CpG island 12927
Cpgi12928 2 181496853 to 181497747 894 CpG island CpG island 12928
Tssr28210 2 181496978 to 181497008 30 - TSS region transcription start site region 28210
Tpd52l2 2 181497142 to 181517966 20824 + protein coding gene tumor protein D52-like 2
Tssr22313 2 181497169 to 181497216 47 + TSS region transcription start site region 22313
Tssr22314 2 181497223 to 181497244 21 + TSS region transcription start site region 22314
Tssr28211 2 181498772 to 181498779 7 - TSS region transcription start site region 28211
Tssr22315 2 181506702 to 181506706 4 + TSS region transcription start site region 22315
Tssr22316 2 181511224 to 181511231 7 + TSS region transcription start site region 22316
Gm25184 2 181512550 to 181512712 162 + snRNA gene predicted gene, 25184
Cpgi12929 2 181520178 to 181521251 1073 CpG island CpG island 12929
Dnajc5 2 181520180 to 181552886 32706 + protein coding gene DnaJ heat shock protein family (Hsp40) member C5
Tssr22317 2 181520513 to 181520531 18 + TSS region transcription start site region 22317
Tssr22318 2 181520533 to 181520563 30 + TSS region transcription start site region 22318
Tssr22319 2 181520582 to 181520593 11 + TSS region transcription start site region 22319
Tssr22320 2 181525764 to 181525808 44 + TSS region transcription start site region 22320
Tssr22321 2 181540489 to 181540494 5 + TSS region transcription start site region 22321
Tssr22322 2 181543425 to 181543432 7 + TSS region transcription start site region 22322
Tssr810 2 181546415 to 181546427 12 + TSS region transcription start site region 810
Tssr22323 2 181550377 to 181550388 11 + TSS region transcription start site region 22323
Tssr22324 2 181557349 to 181557360 11 + TSS region transcription start site region 22324
Uckl1 2 181569152 to 181581973 12821 - protein coding gene uridine-cytidine kinase 1-like 1
Tssr22325 2 181578362 to 181578374 12 + TSS region transcription start site region 22325
Uckl1os 2 181578480 to 181585115 6635 + antisense lncRNA gene uridine-cytidine kinase 1-like 1, opposite strand
Tssr28212 2 181578906 to 181578946 40 - TSS region transcription start site region 28212
Tssr22326 2 181579315 to 181579339 24 + TSS region transcription start site region 22326
Tssr22327 2 181579356 to 181579367 11 + TSS region transcription start site region 22327
Tssr22328 2 181579508 to 181579525 17 + TSS region transcription start site region 22328
Tssr22329 2 181579537 to 181579553 16 + TSS region transcription start site region 22329
Tssr22330 2 181579562 to 181579567 5 + TSS region transcription start site region 22330
Cpgi12930 2 181581094 to 181582148 1054 CpG island CpG island 12930
Tssr28213 2 181581130 to 181581169 39 - TSS region transcription start site region 28213
Tssr28214 2 181581900 to 181581911 11 - TSS region transcription start site region 28214
Tssr28215 2 181581974 to 181581990 16 - TSS region transcription start site region 28215
Tssr28216 2 181581996 to 181582007 11 - TSS region transcription start site region 28216
Zfp512b 2 181582103 to 181592803 10700 - protein coding gene zinc finger protein 512B
Mir7006 2 181587900 to 181587968 68 - miRNA gene microRNA 7006
Cpgi12931 2 181592143 to 181593200 1057 CpG island CpG island 12931
Tssr28217 2 181592698 to 181592727 29 - TSS region transcription start site region 28217
Tssr28218 2 181592733 to 181592790 57 - TSS region transcription start site region 28218
Samd10 2 181595218 to 181599212 3994 - protein coding gene sterile alpha motif domain containing 10
Tssr28219 2 181597581 to 181597609 28 - TSS region transcription start site region 28219
Cpgi12932 2 181598527 to 181599441 914 CpG island CpG island 12932
Tssr28220 2 181598960 to 181598980 20 - TSS region transcription start site region 28220
Tssr28221 2 181599031 to 181599042 11 - TSS region transcription start site region 28221
Tssr28222 2 181599128 to 181599235 107 - TSS region transcription start site region 28222
Tssr28223 2 181599243 to 181599261 18 - TSS region transcription start site region 28223
Tssr28224 2 181599266 to 181599280 14 - TSS region transcription start site region 28224
Cpgi12933 2 181600875 to 181601604 729 CpG island CpG island 12933
Prpf6 2 181601319 to 181655661 54342 + protein coding gene pre-mRNA splicing factor 6
Tssr22331 2 181601328 to 181601344 16 + TSS region transcription start site region 22331
Tssr22332 2 181601347 to 181601415 68 + TSS region transcription start site region 22332
Tssr22333 2 181628702 to 181628705 3 + TSS region transcription start site region 22333
Tssr22334 2 181650461 to 181650466 5 + TSS region transcription start site region 22334
Tssr22335 2 181656879 to 181656900 21 + TSS region transcription start site region 22335
Gm29797 2 181657034 to 181659467 2433 + protein coding gene predicted gene, 29797
Cpgi12934 2 181659105 to 181659755 650 CpG island CpG island 12934
Gm25879 2 181662306 to 181662412 106 + snRNA gene predicted gene, 25879
Sox18 2 181669837 to 181671640 1803 - protein coding gene SRY (sex determining region Y)-box 18
Cpgi12935 2 181670143 to 181671908 1765 CpG island CpG island 12935
Tssr28225 2 181671604 to 181671605 1 - TSS region transcription start site region 28225
Tssr28226 2 181671622 to 181671645 23 - TSS region transcription start site region 28226
Cpgi12936 2 181675493 to 181675799 306 CpG island CpG island 12936
Cpgi12937 2 181679880 to 181680896 1016 CpG island CpG island 12937
Tssr22336 2 181680284 to 181680332 48 + TSS region transcription start site region 22336
Tcea2 2 181680310 to 181688071 7761 + protein coding gene transcription elongation factor A (SII), 2
Tssr811 2 181680334 to 181680341 7 + TSS region transcription start site region 811
Rgs19 2 181688419 to 181693977 5558 - protein coding gene regulator of G-protein signaling 19
Tssr28227 2 181689000 to 181689006 6 - TSS region transcription start site region 28227
Tssr22337 2 181689113 to 181689140 27 + TSS region transcription start site region 22337
Tssr28228 2 181689153 to 181689192 39 - TSS region transcription start site region 28228
Tssr28229 2 181689289 to 181689302 13 - TSS region transcription start site region 28229
Tssr28230 2 181691771 to 181691801 30 - TSS region transcription start site region 28230
Tssr28231 2 181691804 to 181691831 27 - TSS region transcription start site region 28231
Cpgi12938 2 181693354 to 181694481 1127 CpG island CpG island 12938
Tssr28232 2 181693544 to 181693554 10 - TSS region transcription start site region 28232
Tssr28233 2 181693562 to 181693590 28 - TSS region transcription start site region 28233
Tssr28234 2 181693596 to 181693629 33 - TSS region transcription start site region 28234
Tssr28235 2 181693654 to 181693670 16 - TSS region transcription start site region 28235
Tssr22338 2 181693670 to 181693701 31 + TSS region transcription start site region 22338
Tssr28236 2 181693710 to 181693722 12 - TSS region transcription start site region 28236
Tssr28237 2 181693725 to 181693732 7 - TSS region transcription start site region 28237
Tssr22339 2 181693783 to 181693784 1 + TSS region transcription start site region 22339
Tssr28238 2 181693899 to 181693987 88 - TSS region transcription start site region 28238
Lkaaear1 2 181696793 to 181698442 1649 - protein coding gene LKAAEAR motif containing 1 (IKAAEAR murine motif)
Cpgi12939 2 181696953 to 181697619 666 CpG island CpG island 12939
Tssr28239 2 181697804 to 181697825 21 - TSS region transcription start site region 28239
Tssr28240 2 181697829 to 181697834 5 - TSS region transcription start site region 28240
Tssr28241 2 181697837 to 181697844 7 - TSS region transcription start site region 28241
Tssr28242 2 181698407 to 181698415 8 - TSS region transcription start site region 28242
Tssr28243 2 181698433 to 181698447 14 - TSS region transcription start site region 28243
Tssr22340 2 181715005 to 181715082 77 + TSS region transcription start site region 22340
Oprl1 2 181715016 to 181720985 5969 + protein coding gene opioid receptor-like 1
Tssr22341 2 181715086 to 181715102 16 + TSS region transcription start site region 22341
Gm14489 2 181724083 to 181724621 538 - pseudogene predicted gene 14489
Tssr22342 2 181763315 to 181763335 20 + TSS region transcription start site region 22342
Myt1 2 181763332 to 181827786 64454 + protein coding gene myelin transcription factor 1
Tssr28244 2 181764704 to 181764715 11 - TSS region transcription start site region 28244
Tssr22343 2 181767005 to 181767037 32 + TSS region transcription start site region 22343
Tssr22344 2 181767040 to 181767073 33 + TSS region transcription start site region 22344
Tssr22345 2 181767117 to 181767129 12 + TSS region transcription start site region 22345
Tssr22346 2 181767283 to 181767321 38 + TSS region transcription start site region 22346
Tssr22347 2 181767343 to 181767385 42 + TSS region transcription start site region 22347
Gm18895 2 181816678 to 181817614 936 - pseudogene predicted gene, 18895
1700074A11Rik 2 181837416 to 181837798 382 unclassified gene RIKEN cDNA 1700074A11 gene
Cpgi12940 2 181837658 to 181838119 461 CpG island CpG island 12940
Pcmtd2 2 181837854 to 181857461 19607 + protein coding gene protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
Tssr22348 2 181837874 to 181837910 36 + TSS region transcription start site region 22348
Tssr22349 2 181837920 to 181837934 14 + TSS region transcription start site region 22349
Tssr22350 2 181846639 to 181846643 4 + TSS region transcription start site region 22350
Tssr22351 2 181850943 to 181850955 12 + TSS region transcription start site region 22351
Cpgi12941 2 181863961 to 181864884 923 CpG island CpG island 12941
Tssr28245 2 181864198 to 181864233 35 - TSS region transcription start site region 28245
Polr3k 2 181864360 to 181870830 6470 + protein coding gene polymerase (RNA) III (DNA directed) polypeptide K
Tssr22352 2 181864418 to 181864438 20 + TSS region transcription start site region 22352
Tssr22353 2 181864442 to 181864464 22 + TSS region transcription start site region 22353
D2Mit266 2 181873361 to 181873487 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 266
Prdt2 2 181873361 to 181873487 126 QTL prion disease incubation time 2
Tssr812 2 181887983 to 181887987 4 + TSS region transcription start site region 812
Gm5466 2 181896823 to 181898712 1889 + pseudogene predicted gene 5466
Gm40034 2 181914498 to 181918503 4005 + lncRNA gene predicted gene, 40034
Cpgi12942 2 181917459 to 181917894 435 CpG island CpG island 12942
Gm40035 2 181947914 to 181953192 5278 - protein coding gene predicted gene, 40035
Gm14496 2 181991226 to 182001087 9861 + protein coding gene predicted gene 14496