Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:181358516-181628855

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arfrp1 2 181357690 to 181365404 7714 - protein coding gene ADP-ribosylation factor related protein 1
Cpgi12924 2 181364633 to 181366311 1678 CpG island CpG island 12924
Zgpat 2 181364931 to 181380793 15862 + protein coding gene zinc finger, CCCH-type with G patch domain
Tssr28206 2 181365306 to 181365371 65 - TSS region transcription start site region 28206
Tssr22303 2 181365384 to 181365414 30 + TSS region transcription start site region 22303
Tssr22304 2 181365417 to 181365438 21 + TSS region transcription start site region 22304
Tssr22305 2 181365449 to 181365476 27 + TSS region transcription start site region 22305
Tssr22306 2 181365489 to 181365500 11 + TSS region transcription start site region 22306
Tssr22307 2 181365518 to 181365532 14 + TSS region transcription start site region 22307
Tssr22308 2 181365559 to 181365570 11 + TSS region transcription start site region 22308
Tssr22309 2 181377556 to 181377571 15 + TSS region transcription start site region 22309
Lime1 2 181381235 to 181383628 2393 + protein coding gene Lck interacting transmembrane adaptor 1
Tssr22310 2 181381307 to 181381365 58 + TSS region transcription start site region 22310
Slc2a4rg-ps 2 181384250 to 181387586 3336 + pseudogene Slc2a4 regulator, pseudogene
Tssr22311 2 181385760 to 181385762 2 + TSS region transcription start site region 22311
Tssr809 2 181385903 to 181385907 4 + TSS region transcription start site region 809
Zbtb46 2 181387762 to 181459426 71664 - protein coding gene zinc finger and BTB domain containing 46
B930049G02Rik 2 181405970 to 181409894 3924 unclassified gene RIKEN cDNA B930049G02 gene
Gm22708 2 181425935 to 181426037 102 - snRNA gene predicted gene, 22708
Cpgi12925 2 181458175 to 181460623 2448 CpG island CpG island 12925
Tssr28207 2 181459364 to 181459439 75 - TSS region transcription start site region 28207
Tssr28208 2 181483586 to 181483652 66 - TSS region transcription start site region 28208
Tssr28209 2 181492963 to 181493004 41 - TSS region transcription start site region 28209
Tssr22312 2 181493185 to 181493220 35 + TSS region transcription start site region 22312
Abhd16b 2 181493206 to 181494980 1774 + protein coding gene abhydrolase domain containing 16B
Cpgi12926 2 181493516 to 181493855 339 CpG island CpG island 12926
Cpgi12927 2 181494299 to 181494640 341 CpG island CpG island 12927
Cpgi12928 2 181496853 to 181497747 894 CpG island CpG island 12928
Tssr28210 2 181496978 to 181497008 30 - TSS region transcription start site region 28210
Tpd52l2 2 181497142 to 181517966 20824 + protein coding gene tumor protein D52-like 2
Tssr22313 2 181497169 to 181497216 47 + TSS region transcription start site region 22313
Tssr22314 2 181497223 to 181497244 21 + TSS region transcription start site region 22314
Tssr28211 2 181498772 to 181498779 7 - TSS region transcription start site region 28211
Tssr22315 2 181506702 to 181506706 4 + TSS region transcription start site region 22315
Tssr22316 2 181511224 to 181511231 7 + TSS region transcription start site region 22316
Gm25184 2 181512550 to 181512712 162 + snRNA gene predicted gene, 25184
Cpgi12929 2 181520178 to 181521251 1073 CpG island CpG island 12929
Dnajc5 2 181520180 to 181552886 32706 + protein coding gene DnaJ heat shock protein family (Hsp40) member C5
Tssr22317 2 181520513 to 181520531 18 + TSS region transcription start site region 22317
Tssr22318 2 181520533 to 181520563 30 + TSS region transcription start site region 22318
Tssr22319 2 181520582 to 181520593 11 + TSS region transcription start site region 22319
Tssr22320 2 181525764 to 181525808 44 + TSS region transcription start site region 22320
Tssr22321 2 181540489 to 181540494 5 + TSS region transcription start site region 22321
Tssr22322 2 181543425 to 181543432 7 + TSS region transcription start site region 22322
Tssr810 2 181546415 to 181546427 12 + TSS region transcription start site region 810
Tssr22323 2 181550377 to 181550388 11 + TSS region transcription start site region 22323
Tssr22324 2 181557349 to 181557360 11 + TSS region transcription start site region 22324
Uckl1 2 181569152 to 181581973 12821 - protein coding gene uridine-cytidine kinase 1-like 1
Tssr22325 2 181578362 to 181578374 12 + TSS region transcription start site region 22325
Uckl1os 2 181578480 to 181585115 6635 + antisense lncRNA gene uridine-cytidine kinase 1-like 1, opposite strand
Tssr28212 2 181578906 to 181578946 40 - TSS region transcription start site region 28212
Tssr22326 2 181579315 to 181579339 24 + TSS region transcription start site region 22326
Tssr22327 2 181579356 to 181579367 11 + TSS region transcription start site region 22327
Tssr22328 2 181579508 to 181579525 17 + TSS region transcription start site region 22328
Tssr22329 2 181579537 to 181579553 16 + TSS region transcription start site region 22329
Tssr22330 2 181579562 to 181579567 5 + TSS region transcription start site region 22330
Cpgi12930 2 181581094 to 181582148 1054 CpG island CpG island 12930
Tssr28213 2 181581130 to 181581169 39 - TSS region transcription start site region 28213
Tssr28214 2 181581900 to 181581911 11 - TSS region transcription start site region 28214
Tssr28215 2 181581974 to 181581990 16 - TSS region transcription start site region 28215
Tssr28216 2 181581996 to 181582007 11 - TSS region transcription start site region 28216
Zfp512b 2 181582103 to 181592803 10700 - protein coding gene zinc finger protein 512B
Mir7006 2 181587900 to 181587968 68 - miRNA gene microRNA 7006
Cpgi12931 2 181592143 to 181593200 1057 CpG island CpG island 12931
Tssr28217 2 181592698 to 181592727 29 - TSS region transcription start site region 28217
Tssr28218 2 181592733 to 181592790 57 - TSS region transcription start site region 28218
Samd10 2 181595218 to 181599212 3994 - protein coding gene sterile alpha motif domain containing 10
Tssr28219 2 181597581 to 181597609 28 - TSS region transcription start site region 28219
Cpgi12932 2 181598527 to 181599441 914 CpG island CpG island 12932
Tssr28220 2 181598960 to 181598980 20 - TSS region transcription start site region 28220
Tssr28221 2 181599031 to 181599042 11 - TSS region transcription start site region 28221
Tssr28222 2 181599128 to 181599235 107 - TSS region transcription start site region 28222
Tssr28223 2 181599243 to 181599261 18 - TSS region transcription start site region 28223
Tssr28224 2 181599266 to 181599280 14 - TSS region transcription start site region 28224
Cpgi12933 2 181600875 to 181601604 729 CpG island CpG island 12933
Prpf6 2 181601319 to 181655661 54342 + protein coding gene pre-mRNA splicing factor 6
Tssr22331 2 181601328 to 181601344 16 + TSS region transcription start site region 22331
Tssr22332 2 181601347 to 181601415 68 + TSS region transcription start site region 22332
Tssr22333 2 181628702 to 181628705 3 + TSS region transcription start site region 22333