Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 2:181264308-181364319

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43 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prpf6 2 181243112 to 181297454 54342 + protein coding gene pre-mRNA splicing factor 6
Tssr22333 2 181270495 to 181270498 3 + TSS region transcription start site region 22333
Tssr22334 2 181292254 to 181292259 5 + TSS region transcription start site region 22334
Tssr22335 2 181298672 to 181298693 21 + TSS region transcription start site region 22335
Gm29797 2 181298827 to 181301260 2433 + protein coding gene predicted gene, 29797
Cpgi12934 2 181300898 to 181301548 650 CpG island CpG island 12934
Gm25879 2 181304099 to 181304205 106 + snRNA gene predicted gene, 25879
Sox18 2 181311630 to 181313433 1803 - protein coding gene SRY (sex determining region Y)-box 18
Cpgi12935 2 181311936 to 181313701 1765 CpG island CpG island 12935
Tssr28225 2 181313397 to 181313398 1 - TSS region transcription start site region 28225
Tssr28226 2 181313415 to 181313438 23 - TSS region transcription start site region 28226
Cpgi12936 2 181317286 to 181317592 306 CpG island CpG island 12936
Cpgi12937 2 181321673 to 181322689 1016 CpG island CpG island 12937
Tssr22336 2 181322077 to 181322125 48 + TSS region transcription start site region 22336
Tcea2 2 181322103 to 181329864 7761 + protein coding gene transcription elongation factor A (SII), 2
Tssr811 2 181322127 to 181322134 7 + TSS region transcription start site region 811
Rgs19 2 181330212 to 181335770 5558 - protein coding gene regulator of G-protein signaling 19
Tssr28227 2 181330793 to 181330799 6 - TSS region transcription start site region 28227
Tssr22337 2 181330906 to 181330933 27 + TSS region transcription start site region 22337
Tssr28228 2 181330946 to 181330985 39 - TSS region transcription start site region 28228
Tssr28229 2 181331082 to 181331095 13 - TSS region transcription start site region 28229
Tssr28230 2 181333564 to 181333594 30 - TSS region transcription start site region 28230
Tssr28231 2 181333597 to 181333624 27 - TSS region transcription start site region 28231
Cpgi12938 2 181335147 to 181336274 1127 CpG island CpG island 12938
Tssr28232 2 181335337 to 181335347 10 - TSS region transcription start site region 28232
Tssr28233 2 181335355 to 181335383 28 - TSS region transcription start site region 28233
Tssr28234 2 181335389 to 181335422 33 - TSS region transcription start site region 28234
Tssr28235 2 181335447 to 181335463 16 - TSS region transcription start site region 28235
Tssr22338 2 181335463 to 181335494 31 + TSS region transcription start site region 22338
Tssr28236 2 181335503 to 181335515 12 - TSS region transcription start site region 28236
Tssr28237 2 181335518 to 181335525 7 - TSS region transcription start site region 28237
Tssr22339 2 181335576 to 181335577 1 + TSS region transcription start site region 22339
Tssr28238 2 181335692 to 181335780 88 - TSS region transcription start site region 28238
Lkaaear1 2 181338586 to 181340235 1649 - protein coding gene LKAAEAR motif containing 1 (IKAAEAR murine motif)
Cpgi12939 2 181338746 to 181339412 666 CpG island CpG island 12939
Tssr28239 2 181339597 to 181339618 21 - TSS region transcription start site region 28239
Tssr28240 2 181339622 to 181339627 5 - TSS region transcription start site region 28240
Tssr28241 2 181339630 to 181339637 7 - TSS region transcription start site region 28241
Tssr28242 2 181340200 to 181340208 8 - TSS region transcription start site region 28242
Tssr28243 2 181340226 to 181340240 14 - TSS region transcription start site region 28243
Tssr22340 2 181356798 to 181356875 77 + TSS region transcription start site region 22340
Oprl1 2 181356809 to 181362778 5969 + protein coding gene opioid receptor-like 1
Tssr22341 2 181356879 to 181356895 16 + TSS region transcription start site region 22341