Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:181190417-181540438

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lore2 2 144673941 to 181254801 36580860 QTL loss of righting induced by ethanol 2
Ptk6 2 181195124 to 181203630 8506 - protein coding gene PTK6 protein tyrosine kinase 6
Tssr28183 2 181197035 to 181197062 27 - TSS region transcription start site region 28183
Tssr22294 2 181201177 to 181201179 2 + TSS region transcription start site region 22294
Tssr28184 2 181202507 to 181202534 27 - TSS region transcription start site region 28184
Tssr28185 2 181202536 to 181202563 27 - TSS region transcription start site region 28185
Srms 2 181205563 to 181213171 7608 - protein coding gene src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
Gm40033 2 181206632 to 181210969 4337 + lncRNA gene predicted gene, 40033
Cpgi12917 2 181212343 to 181213314 971 CpG island CpG island 12917
Tssr22295 2 181212586 to 181212603 17 + TSS region transcription start site region 22295
Tssr28186 2 181213122 to 181213133 11 - TSS region transcription start site region 28186
Gm14398 2 181216727 to 181217799 1072 + pseudogene predicted gene 14398
2310035O12Rik 2 181218503 to 181218834 331 unclassified gene RIKEN cDNA 2310035O12 gene
Cpgi12918 2 181219757 to 181220133 376 CpG island CpG island 12918
Tssr22296 2 181219998 to 181220055 57 + TSS region transcription start site region 22296
Fndc11 2 181220013 to 181222854 2841 + protein coding gene fibronectin type III domain containing 11
Helz2 2 181227615 to 181242027 14412 - protein coding gene helicase with zinc finger 2, transcriptional coactivator
Tssr28187 2 181227955 to 181227972 17 - TSS region transcription start site region 28187
Tssr28188 2 181228021 to 181228032 11 - TSS region transcription start site region 28188
Tssr28189 2 181228343 to 181228354 11 - TSS region transcription start site region 28189
Tssr28190 2 181234082 to 181234128 46 - TSS region transcription start site region 28190
Tssr28191 2 181236119 to 181236130 11 - TSS region transcription start site region 28191
Tssr28192 2 181236229 to 181236243 14 - TSS region transcription start site region 28192
Tssr28193 2 181237566 to 181237579 13 - TSS region transcription start site region 28193
Tssr22297 2 181240599 to 181240635 36 + TSS region transcription start site region 22297
Tssr28194 2 181240692 to 181240710 18 - TSS region transcription start site region 28194
Tssr28195 2 181241052 to 181241101 49 - TSS region transcription start site region 28195
Tssr28196 2 181241955 to 181241962 7 - TSS region transcription start site region 28196
Tssr28197 2 181241980 to 181242018 38 - TSS region transcription start site region 28197
Tssr28198 2 181242020 to 181242048 28 - TSS region transcription start site region 28198
Gmeb2 2 181251449 to 181287974 36525 - protein coding gene glucocorticoid modulatory element binding protein 2
D2Mit457 2 181254682 to 181254801 119 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 457
Mobq6 2 181254801 to 85893925 -95360876 QTL multigenic obesity QTL 6
Cpgi12919 2 181287364 to 181288435 1071 CpG island CpG island 12919
Tssr22298 2 181287763 to 181287820 57 + TSS region transcription start site region 22298
Tssr28199 2 181287958 to 181288007 49 - TSS region transcription start site region 28199
Tssr28200 2 181288016 to 181288041 25 - TSS region transcription start site region 28200
Cpgi12920 2 181291949 to 181292436 487 CpG island CpG island 12920
Gm7645 2 181292148 to 181292935 787 + pseudogene predicted gene 7645
Tssr22299 2 181292737 to 181292750 13 + TSS region transcription start site region 22299
Tssr28201 2 181294835 to 181294836 1 - TSS region transcription start site region 28201
Stmn3 2 181306459 to 181314500 8041 - protein coding gene stathmin-like 3
Tssr22300 2 181306749 to 181306760 11 + TSS region transcription start site region 22300
Cpgi12921 2 181306819 to 181307398 579 CpG island CpG island 12921
Tssr28202 2 181313274 to 181313278 4 - TSS region transcription start site region 28202
Cpgi12922 2 181313412 to 181314360 948 CpG island CpG island 12922
Tssr28203 2 181314258 to 181314269 11 - TSS region transcription start site region 28203
Tssr28204 2 181314278 to 181314298 20 - TSS region transcription start site region 28204
Tssr28205 2 181314308 to 181314319 11 - TSS region transcription start site region 28205
Cpgi12923 2 181319610 to 181320005 395 CpG island CpG island 12923
Tssr22301 2 181319714 to 181319780 66 + TSS region transcription start site region 22301
Rtel1 2 181319739 to 181356616 36877 + protein coding gene regulator of telomere elongation helicase 1
Tssr22302 2 181319806 to 181319815 9 + TSS region transcription start site region 22302
Arfrp1 2 181357690 to 181365404 7714 - protein coding gene ADP-ribosylation factor related protein 1
Cpgi12924 2 181364633 to 181366311 1678 CpG island CpG island 12924
Zgpat 2 181364931 to 181380793 15862 + protein coding gene zinc finger, CCCH-type with G patch domain
Tssr28206 2 181365306 to 181365371 65 - TSS region transcription start site region 28206
Tssr22303 2 181365384 to 181365414 30 + TSS region transcription start site region 22303
Tssr22304 2 181365417 to 181365438 21 + TSS region transcription start site region 22304
Tssr22305 2 181365449 to 181365476 27 + TSS region transcription start site region 22305
Tssr22306 2 181365489 to 181365500 11 + TSS region transcription start site region 22306
Tssr22307 2 181365518 to 181365532 14 + TSS region transcription start site region 22307
Tssr22308 2 181365559 to 181365570 11 + TSS region transcription start site region 22308
Tssr22309 2 181377556 to 181377571 15 + TSS region transcription start site region 22309
Lime1 2 181381235 to 181383628 2393 + protein coding gene Lck interacting transmembrane adaptor 1
Tssr22310 2 181381307 to 181381365 58 + TSS region transcription start site region 22310
Slc2a4rg-ps 2 181384250 to 181387586 3336 + pseudogene Slc2a4 regulator, pseudogene
Tssr22311 2 181385760 to 181385762 2 + TSS region transcription start site region 22311
Tssr809 2 181385903 to 181385907 4 + TSS region transcription start site region 809
Zbtb46 2 181387762 to 181459426 71664 - protein coding gene zinc finger and BTB domain containing 46
B930049G02Rik 2 181405970 to 181409894 3924 unclassified gene RIKEN cDNA B930049G02 gene
Gm22708 2 181425935 to 181426037 102 - snRNA gene predicted gene, 22708
Cpgi12925 2 181458175 to 181460623 2448 CpG island CpG island 12925
Tssr28207 2 181459364 to 181459439 75 - TSS region transcription start site region 28207
Tssr28208 2 181483586 to 181483652 66 - TSS region transcription start site region 28208
Tssr28209 2 181492963 to 181493004 41 - TSS region transcription start site region 28209
Tssr22312 2 181493185 to 181493220 35 + TSS region transcription start site region 22312
Abhd16b 2 181493206 to 181494980 1774 + protein coding gene abhydrolase domain containing 16B
Cpgi12926 2 181493516 to 181493855 339 CpG island CpG island 12926
Cpgi12927 2 181494299 to 181494640 341 CpG island CpG island 12927
Cpgi12928 2 181496853 to 181497747 894 CpG island CpG island 12928
Tssr28210 2 181496978 to 181497008 30 - TSS region transcription start site region 28210
Tpd52l2 2 181497142 to 181517966 20824 + protein coding gene tumor protein D52-like 2
Tssr22313 2 181497169 to 181497216 47 + TSS region transcription start site region 22313
Tssr22314 2 181497223 to 181497244 21 + TSS region transcription start site region 22314
Tssr28211 2 181498772 to 181498779 7 - TSS region transcription start site region 28211
Tssr22315 2 181506702 to 181506706 4 + TSS region transcription start site region 22315
Tssr22316 2 181511224 to 181511231 7 + TSS region transcription start site region 22316
Gm25184 2 181512550 to 181512712 162 + snRNA gene predicted gene, 25184
Cpgi12929 2 181520178 to 181521251 1073 CpG island CpG island 12929
Dnajc5 2 181520180 to 181552886 32706 + protein coding gene DnaJ heat shock protein family (Hsp40) member C5
Tssr22317 2 181520513 to 181520531 18 + TSS region transcription start site region 22317
Tssr22318 2 181520533 to 181520563 30 + TSS region transcription start site region 22318
Tssr22319 2 181520582 to 181520593 11 + TSS region transcription start site region 22319
Tssr22320 2 181525764 to 181525808 44 + TSS region transcription start site region 22320