Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:180975579-181235289

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
nmf88 2 178800545 to 181111429 2310884 heritable phenotypic marker neuroscience mutagenesis facility, 88
Arfgap1 2 180967225 to 180982526 15301 + protein coding gene ADP-ribosylation factor GTPase activating protein 1
9230112E08Rik 2 180983924 to 180987275 3351 + sense overlapping lncRNA gene RIKEN cDNA 9230112E08 gene
Tssr22284 2 180985032 to 180985071 39 + TSS region transcription start site region 22284
Col20a1 2 180986535 to 181018363 31828 + protein coding gene collagen, type XX, alpha 1
Gm30797 2 181011991 to 181013150 1159 - lncRNA gene predicted gene, 30797
Tssr28150 2 181013248 to 181013298 50 - TSS region transcription start site region 28150
Tssr22285 2 181013434 to 181013445 11 + TSS region transcription start site region 22285
Tssr28151 2 181020428 to 181020449 21 - TSS region transcription start site region 28151
Tssr28152 2 181020577 to 181020586 9 - TSS region transcription start site region 28152
Chrna4 2 181022311 to 181043580 21269 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 4
Tssr28153 2 181029302 to 181029319 17 - TSS region transcription start site region 28153
Cpgi12912 2 181038530 to 181039824 1294 CpG island CpG island 12912
Tssr28154 2 181039160 to 181039192 32 - TSS region transcription start site region 28154
Tssr28155 2 181039195 to 181039228 33 - TSS region transcription start site region 28155
Tssr28156 2 181039232 to 181039282 50 - TSS region transcription start site region 28156
Tssr28157 2 181039286 to 181039320 34 - TSS region transcription start site region 28157
Tssr28158 2 181043540 to 181043554 14 - TSS region transcription start site region 28158
Tssr28159 2 181043591 to 181043604 13 - TSS region transcription start site region 28159
Kcnq2 2 181075579 to 181135289 59710 - protein coding gene potassium voltage-gated channel, subfamily Q, member 2
Lfibq19 2 181090877 to 181807525 716648 QTL liver fibrosis QTL 19
Tssr28160 2 181109755 to 181109759 4 - TSS region transcription start site region 28160
D2Frk1 2 181111230 to 181111429 199 DNA segment DNA segment, Chr 2, Frankel 1
Cpgi12913 2 181134248 to 181135741 1493 CpG island CpG island 12913
Tssr28161 2 181135198 to 181135213 15 - TSS region transcription start site region 28161
Tssr28162 2 181135220 to 181135304 84 - TSS region transcription start site region 28162
Cpgi12914 2 181147316 to 181148986 1670 CpG island CpG island 12914
Tssr28163 2 181147354 to 181147396 42 - TSS region transcription start site region 28163
Eef1a2 2 181147692 to 181157015 9323 - protein coding gene eukaryotic translation elongation factor 1 alpha 2
Tssr28164 2 181147866 to 181147885 19 - TSS region transcription start site region 28164
Tssr28165 2 181150969 to 181150996 27 - TSS region transcription start site region 28165
Tssr22286 2 181155252 to 181155293 41 + TSS region transcription start site region 22286
Tssr28166 2 181155365 to 181155377 12 - TSS region transcription start site region 28166
Tssr28167 2 181155419 to 181155443 24 - TSS region transcription start site region 28167
Tssr28168 2 181155451 to 181155487 36 - TSS region transcription start site region 28168
Tssr28169 2 181156006 to 181156050 44 - TSS region transcription start site region 28169
Tssr28170 2 181156237 to 181156251 14 - TSS region transcription start site region 28170
Cpgi12915 2 181156401 to 181157400 999 CpG island CpG island 12915
Tssr28171 2 181156742 to 181156757 15 - TSS region transcription start site region 28171
Tssr28172 2 181156769 to 181156786 17 - TSS region transcription start site region 28172
Tssr28173 2 181156797 to 181156808 11 - TSS region transcription start site region 28173
Tssr28174 2 181156816 to 181156829 13 - TSS region transcription start site region 28174
Tssr28175 2 181156832 to 181156843 11 - TSS region transcription start site region 28175
Tssr28176 2 181156846 to 181156859 13 - TSS region transcription start site region 28176
Tssr28177 2 181156899 to 181156905 6 - TSS region transcription start site region 28177
Tssr28178 2 181156943 to 181156954 11 - TSS region transcription start site region 28178
Tssr28179 2 181156993 to 181157017 24 - TSS region transcription start site region 28179
Tssr28180 2 181157021 to 181157042 21 - TSS region transcription start site region 28180
Tssr28181 2 181157058 to 181157069 11 - TSS region transcription start site region 28181
Tssr28182 2 181157788 to 181157807 19 - TSS region transcription start site region 28182
Gm24892 2 181183512 to 181183615 103 + snRNA gene predicted gene, 24892
C330003G01Rik 2 181185043 to 181187722 2679 unclassified gene RIKEN cDNA C330003G01 gene
Gm46783 2 181185047 to 181187191 2144 - lncRNA gene predicted gene, 46783
Cpgi12916 2 181186784 to 181188014 1230 CpG island CpG island 12916
Ppdpf 2 181187222 to 181188506 1284 + protein coding gene pancreatic progenitor cell differentiation and proliferation factor
Tssr22287 2 181187275 to 181187347 72 + TSS region transcription start site region 22287
Tssr22288 2 181187375 to 181187419 44 + TSS region transcription start site region 22288
Tssr22289 2 181187509 to 181187595 86 + TSS region transcription start site region 22289
Tssr22290 2 181187597 to 181187618 21 + TSS region transcription start site region 22290
Tssr22291 2 181187636 to 181187652 16 + TSS region transcription start site region 22291
Tssr22292 2 181187779 to 181187808 29 + TSS region transcription start site region 22292
Tssr22293 2 181187877 to 181187916 39 + TSS region transcription start site region 22293
Ptk6 2 181195124 to 181203630 8506 - protein coding gene PTK6 protein tyrosine kinase 6
Tssr28183 2 181197035 to 181197062 27 - TSS region transcription start site region 28183
Tssr22294 2 181201177 to 181201179 2 + TSS region transcription start site region 22294
Tssr28184 2 181202507 to 181202534 27 - TSS region transcription start site region 28184
Tssr28185 2 181202536 to 181202563 27 - TSS region transcription start site region 28185
Srms 2 181205563 to 181213171 7608 - protein coding gene src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
Gm40033 2 181206632 to 181210969 4337 + lncRNA gene predicted gene, 40033
Cpgi12917 2 181212343 to 181213314 971 CpG island CpG island 12917
Tssr22295 2 181212586 to 181212603 17 + TSS region transcription start site region 22295
Tssr28186 2 181213122 to 181213133 11 - TSS region transcription start site region 28186
Gm14398 2 181216727 to 181217799 1072 + pseudogene predicted gene 14398
2310035O12Rik 2 181218503 to 181218834 331 unclassified gene RIKEN cDNA 2310035O12 gene
Cpgi12918 2 181219757 to 181220133 376 CpG island CpG island 12918
Tssr22296 2 181219998 to 181220055 57 + TSS region transcription start site region 22296
Fndc11 2 181220013 to 181222854 2841 + protein coding gene fibronectin type III domain containing 11
Helz2 2 181227615 to 181242027 14412 - protein coding gene helicase with zinc finger 2, transcriptional coactivator
Tssr28187 2 181227955 to 181227972 17 - TSS region transcription start site region 28187
Tssr28188 2 181228021 to 181228032 11 - TSS region transcription start site region 28188
Tssr28189 2 181228343 to 181228354 11 - TSS region transcription start site region 28189
Tssr28190 2 181234082 to 181234128 46 - TSS region transcription start site region 28190