Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:180780582-182260593

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314 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lore2 2 144673941 to 181254801 36580860 QTL loss of righting induced by ethanol 2
Vacq1 2 178800545 to 181873487 3072942 QTL voluntary alcohol consumption QTL 1
nmf88 2 178800545 to 181111429 2310884 heritable phenotypic marker neuroscience mutagenesis facility, 88
D2Mit463 2 180794454 to 180794749 295 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-463
Gm14340 2 180818343 to 180824630 6287 - lincRNA gene predicted gene 14340
Tssr28135 2 180824596 to 180824607 11 - TSS region transcription start site region 28135
Tssr22272 2 180825702 to 180825704 2 + TSS region transcription start site region 22272
Tssr22273 2 180836195 to 180836198 3 + TSS region transcription start site region 22273
Gm14344 2 180836481 to 180848914 12433 + lincRNA gene predicted gene 14344
Gm22842 2 180837838 to 180837955 117 + unclassified non-coding RNA gene predicted gene, 22842
Gm14342 2 180837970 to 180890778 52808 - lincRNA gene predicted gene 14342
D2Mit74 2 180844614 to 180844766 152 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 74
Alcp5 2 180844614 to 180844766 152 QTL alcohol preference locus 5, male specific
Alcp6 2 180844614 to 180844766 152 QTL alcohol preference locus 6, female specific
Gm14339 2 180847652 to 180849046 1394 + lincRNA gene predicted gene 14339
Tssr28136 2 180889682 to 180889696 14 - TSS region transcription start site region 28136
Tssr28137 2 180889703 to 180889715 12 - TSS region transcription start site region 28137
Cpgi12907 2 180890601 to 180891807 1206 CpG island CpG island 12907
Tssr22274 2 180890675 to 180890686 11 + TSS region transcription start site region 22274
2810461L16Rik 2 180890683 to 180890965 282 unclassified gene RIKEN cDNA 2810461L16 gene
Tssr22275 2 180890687 to 180890698 11 + TSS region transcription start site region 22275
Tssr22276 2 180890699 to 180890712 13 + TSS region transcription start site region 22276
Tssr22277 2 180890834 to 180890853 19 + TSS region transcription start site region 22277
Cpgi12908 2 180892453 to 180894923 2470 CpG island CpG island 12908
Tssr28138 2 180892931 to 180892939 8 - TSS region transcription start site region 28138
Tssr22278 2 180893121 to 180893138 17 + TSS region transcription start site region 22278
Tssr28139 2 180893401 to 180893404 3 - TSS region transcription start site region 28139
Tssr28140 2 180893408 to 180893422 14 - TSS region transcription start site region 28140
Mir124a-3 2 180894040 to 180894107 67 + miRNA gene microRNA 124a-3
Gm27032 2 180894105 to 180895220 1115 + lincRNA gene predicted gene, 27032
Ythdf1 2 180904377 to 180920936 16559 - protein coding gene YTH N6-methyladenosine RNA binding protein 1
Tssr28141 2 180909823 to 180909827 4 - TSS region transcription start site region 28141
Tssr28142 2 180911543 to 180911571 28 - TSS region transcription start site region 28142
Cpgi12909 2 180920189 to 180921463 1274 CpG island CpG island 12909
Tssr28143 2 180920889 to 180920923 34 - TSS region transcription start site region 28143
Tssr28144 2 180920925 to 180920964 39 - TSS region transcription start site region 28144
Tssr28145 2 180920995 to 180921010 15 - TSS region transcription start site region 28145
Tssr28146 2 180921015 to 180921022 7 - TSS region transcription start site region 28146
Tssr22279 2 180929000 to 180929046 46 + TSS region transcription start site region 22279
Birc7 2 180929023 to 180934010 4987 + protein coding gene baculoviral IAP repeat-containing 7 (livin)
Nkain4 2 180934772 to 180954699 19927 - protein coding gene Na+/K+ transporting ATPase interacting 4
Tssr28147 2 180935997 to 180936011 14 - TSS region transcription start site region 28147
Cpgi12910 2 180954224 to 180954998 774 CpG island CpG island 12910
Gm14341 2 180954464 to 180966812 12348 + antisense lncRNA gene predicted gene 14341
Tssr28148 2 180954647 to 180954670 23 - TSS region transcription start site region 28148
Tssr28149 2 180954676 to 180954708 32 - TSS region transcription start site region 28149
Cpgi12911 2 180966953 to 180967823 870 CpG island CpG island 12911
Tssr22280 2 180967218 to 180967289 71 + TSS region transcription start site region 22280
Arfgap1 2 180967225 to 180982526 15301 + protein coding gene ADP-ribosylation factor GTPase activating protein 1
Tssr22281 2 180967291 to 180967303 12 + TSS region transcription start site region 22281
Tssr22282 2 180967624 to 180967637 13 + TSS region transcription start site region 22282
Tssr22283 2 180974321 to 180974325 4 + TSS region transcription start site region 22283
9230112E08Rik 2 180983924 to 180987275 3351 + sense overlapping lncRNA gene RIKEN cDNA 9230112E08 gene
Tssr22284 2 180985032 to 180985071 39 + TSS region transcription start site region 22284
Col20a1 2 180986535 to 181018363 31828 + protein coding gene collagen, type XX, alpha 1
Gm30797 2 181011991 to 181013150 1159 - lncRNA gene predicted gene, 30797
Tssr28150 2 181013248 to 181013298 50 - TSS region transcription start site region 28150
Tssr22285 2 181013434 to 181013445 11 + TSS region transcription start site region 22285
Tssr28151 2 181020428 to 181020449 21 - TSS region transcription start site region 28151
Tssr28152 2 181020577 to 181020586 9 - TSS region transcription start site region 28152
Chrna4 2 181022311 to 181043580 21269 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 4
Tssr28153 2 181029302 to 181029319 17 - TSS region transcription start site region 28153
Cpgi12912 2 181038530 to 181039824 1294 CpG island CpG island 12912
Tssr28154 2 181039160 to 181039192 32 - TSS region transcription start site region 28154
Tssr28155 2 181039195 to 181039228 33 - TSS region transcription start site region 28155
Tssr28156 2 181039232 to 181039282 50 - TSS region transcription start site region 28156
Tssr28157 2 181039286 to 181039320 34 - TSS region transcription start site region 28157
Tssr28158 2 181043540 to 181043554 14 - TSS region transcription start site region 28158
Tssr28159 2 181043591 to 181043604 13 - TSS region transcription start site region 28159
Kcnq2 2 181075579 to 181135289 59710 - protein coding gene potassium voltage-gated channel, subfamily Q, member 2
Lfibq19 2 181090877 to 181807525 716648 QTL liver fibrosis QTL 19
Tssr28160 2 181109755 to 181109759 4 - TSS region transcription start site region 28160
D2Frk1 2 181111230 to 181111429 199 DNA segment DNA segment, Chr 2, Frankel 1
Cpgi12913 2 181134248 to 181135741 1493 CpG island CpG island 12913
Tssr28161 2 181135198 to 181135213 15 - TSS region transcription start site region 28161
Tssr28162 2 181135220 to 181135304 84 - TSS region transcription start site region 28162
Cpgi12914 2 181147316 to 181148986 1670 CpG island CpG island 12914
Tssr28163 2 181147354 to 181147396 42 - TSS region transcription start site region 28163
Eef1a2 2 181147692 to 181157015 9323 - protein coding gene eukaryotic translation elongation factor 1 alpha 2
Tssr28164 2 181147866 to 181147885 19 - TSS region transcription start site region 28164
Tssr28165 2 181150969 to 181150996 27 - TSS region transcription start site region 28165
Tssr22286 2 181155252 to 181155293 41 + TSS region transcription start site region 22286
Tssr28166 2 181155365 to 181155377 12 - TSS region transcription start site region 28166
Tssr28167 2 181155419 to 181155443 24 - TSS region transcription start site region 28167
Tssr28168 2 181155451 to 181155487 36 - TSS region transcription start site region 28168
Tssr28169 2 181156006 to 181156050 44 - TSS region transcription start site region 28169
Tssr28170 2 181156237 to 181156251 14 - TSS region transcription start site region 28170
Cpgi12915 2 181156401 to 181157400 999 CpG island CpG island 12915
Tssr28171 2 181156742 to 181156757 15 - TSS region transcription start site region 28171
Tssr28172 2 181156769 to 181156786 17 - TSS region transcription start site region 28172
Tssr28173 2 181156797 to 181156808 11 - TSS region transcription start site region 28173
Tssr28174 2 181156816 to 181156829 13 - TSS region transcription start site region 28174
Tssr28175 2 181156832 to 181156843 11 - TSS region transcription start site region 28175
Tssr28176 2 181156846 to 181156859 13 - TSS region transcription start site region 28176
Tssr28177 2 181156899 to 181156905 6 - TSS region transcription start site region 28177
Tssr28178 2 181156943 to 181156954 11 - TSS region transcription start site region 28178
Tssr28179 2 181156993 to 181157017 24 - TSS region transcription start site region 28179
Tssr28180 2 181157021 to 181157042 21 - TSS region transcription start site region 28180
Tssr28181 2 181157058 to 181157069 11 - TSS region transcription start site region 28181
Tssr28182 2 181157788 to 181157807 19 - TSS region transcription start site region 28182
Gm24892 2 181183512 to 181183615 103 + snRNA gene predicted gene, 24892
C330003G01Rik 2 181185043 to 181187722 2679 unclassified gene RIKEN cDNA C330003G01 gene
Gm46783 2 181185047 to 181187191 2144 - lncRNA gene predicted gene, 46783
Cpgi12916 2 181186784 to 181188014 1230 CpG island CpG island 12916
Ppdpf 2 181187222 to 181188506 1284 + protein coding gene pancreatic progenitor cell differentiation and proliferation factor
Tssr22287 2 181187275 to 181187347 72 + TSS region transcription start site region 22287
Tssr22288 2 181187375 to 181187419 44 + TSS region transcription start site region 22288
Tssr22289 2 181187509 to 181187595 86 + TSS region transcription start site region 22289
Tssr22290 2 181187597 to 181187618 21 + TSS region transcription start site region 22290
Tssr22291 2 181187636 to 181187652 16 + TSS region transcription start site region 22291
Tssr22292 2 181187779 to 181187808 29 + TSS region transcription start site region 22292
Tssr22293 2 181187877 to 181187916 39 + TSS region transcription start site region 22293
Ptk6 2 181195124 to 181203630 8506 - protein coding gene PTK6 protein tyrosine kinase 6
Tssr28183 2 181197035 to 181197062 27 - TSS region transcription start site region 28183
Tssr22294 2 181201177 to 181201179 2 + TSS region transcription start site region 22294
Tssr28184 2 181202507 to 181202534 27 - TSS region transcription start site region 28184
Tssr28185 2 181202536 to 181202563 27 - TSS region transcription start site region 28185
Srms 2 181205563 to 181213171 7608 - protein coding gene src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
Gm40033 2 181206632 to 181210969 4337 + lncRNA gene predicted gene, 40033
Cpgi12917 2 181212343 to 181213314 971 CpG island CpG island 12917
Tssr22295 2 181212586 to 181212603 17 + TSS region transcription start site region 22295
Tssr28186 2 181213122 to 181213133 11 - TSS region transcription start site region 28186
Gm14398 2 181216727 to 181217799 1072 + pseudogene predicted gene 14398
2310035O12Rik 2 181218503 to 181218834 331 unclassified gene RIKEN cDNA 2310035O12 gene
Cpgi12918 2 181219757 to 181220133 376 CpG island CpG island 12918
Tssr22296 2 181219998 to 181220055 57 + TSS region transcription start site region 22296
Fndc11 2 181220013 to 181222854 2841 + protein coding gene fibronectin type III domain containing 11
Helz2 2 181227615 to 181242027 14412 - protein coding gene helicase with zinc finger 2, transcriptional coactivator
Tssr28187 2 181227955 to 181227972 17 - TSS region transcription start site region 28187
Tssr28188 2 181228021 to 181228032 11 - TSS region transcription start site region 28188
Tssr28189 2 181228343 to 181228354 11 - TSS region transcription start site region 28189
Tssr28190 2 181234082 to 181234128 46 - TSS region transcription start site region 28190
Tssr28191 2 181236119 to 181236130 11 - TSS region transcription start site region 28191
Tssr28192 2 181236229 to 181236243 14 - TSS region transcription start site region 28192
Tssr28193 2 181237566 to 181237579 13 - TSS region transcription start site region 28193
Tssr22297 2 181240599 to 181240635 36 + TSS region transcription start site region 22297
Tssr28194 2 181240692 to 181240710 18 - TSS region transcription start site region 28194
Tssr28195 2 181241052 to 181241101 49 - TSS region transcription start site region 28195
Tssr28196 2 181241955 to 181241962 7 - TSS region transcription start site region 28196
Tssr28197 2 181241980 to 181242018 38 - TSS region transcription start site region 28197
Tssr28198 2 181242020 to 181242048 28 - TSS region transcription start site region 28198
Gmeb2 2 181251449 to 181287974 36525 - protein coding gene glucocorticoid modulatory element binding protein 2
D2Mit457 2 181254682 to 181254801 119 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 457
Mobq6 2 181254801 to 85893925 -95360876 QTL multigenic obesity QTL 6
Cpgi12919 2 181287364 to 181288435 1071 CpG island CpG island 12919
Tssr22298 2 181287763 to 181287820 57 + TSS region transcription start site region 22298
Tssr28199 2 181287958 to 181288007 49 - TSS region transcription start site region 28199
Tssr28200 2 181288016 to 181288041 25 - TSS region transcription start site region 28200
Cpgi12920 2 181291949 to 181292436 487 CpG island CpG island 12920
Gm7645 2 181292148 to 181292935 787 + pseudogene predicted gene 7645
Tssr22299 2 181292737 to 181292750 13 + TSS region transcription start site region 22299
Tssr28201 2 181294835 to 181294836 1 - TSS region transcription start site region 28201
Stmn3 2 181306459 to 181314500 8041 - protein coding gene stathmin-like 3
Tssr22300 2 181306749 to 181306760 11 + TSS region transcription start site region 22300
Cpgi12921 2 181306819 to 181307398 579 CpG island CpG island 12921
Tssr28202 2 181313274 to 181313278 4 - TSS region transcription start site region 28202
Cpgi12922 2 181313412 to 181314360 948 CpG island CpG island 12922
Tssr28203 2 181314258 to 181314269 11 - TSS region transcription start site region 28203
Tssr28204 2 181314278 to 181314298 20 - TSS region transcription start site region 28204
Tssr28205 2 181314308 to 181314319 11 - TSS region transcription start site region 28205
Cpgi12923 2 181319610 to 181320005 395 CpG island CpG island 12923
Tssr22301 2 181319714 to 181319780 66 + TSS region transcription start site region 22301
Rtel1 2 181319739 to 181356616 36877 + protein coding gene regulator of telomere elongation helicase 1
Tssr22302 2 181319806 to 181319815 9 + TSS region transcription start site region 22302
Arfrp1 2 181357690 to 181365404 7714 - protein coding gene ADP-ribosylation factor related protein 1
Cpgi12924 2 181364633 to 181366311 1678 CpG island CpG island 12924
Zgpat 2 181364931 to 181380793 15862 + protein coding gene zinc finger, CCCH-type with G patch domain
Tssr28206 2 181365306 to 181365371 65 - TSS region transcription start site region 28206
Tssr22303 2 181365384 to 181365414 30 + TSS region transcription start site region 22303
Tssr22304 2 181365417 to 181365438 21 + TSS region transcription start site region 22304
Tssr22305 2 181365449 to 181365476 27 + TSS region transcription start site region 22305
Tssr22306 2 181365489 to 181365500 11 + TSS region transcription start site region 22306
Tssr22307 2 181365518 to 181365532 14 + TSS region transcription start site region 22307
Tssr22308 2 181365559 to 181365570 11 + TSS region transcription start site region 22308
Tssr22309 2 181377556 to 181377571 15 + TSS region transcription start site region 22309
Lime1 2 181381235 to 181383628 2393 + protein coding gene Lck interacting transmembrane adaptor 1
Tssr22310 2 181381307 to 181381365 58 + TSS region transcription start site region 22310
Slc2a4rg-ps 2 181384250 to 181387586 3336 + pseudogene Slc2a4 regulator, pseudogene
Tssr22311 2 181385760 to 181385762 2 + TSS region transcription start site region 22311
Tssr809 2 181385903 to 181385907 4 + TSS region transcription start site region 809
Zbtb46 2 181387762 to 181459426 71664 - protein coding gene zinc finger and BTB domain containing 46
B930049G02Rik 2 181405970 to 181409894 3924 unclassified gene RIKEN cDNA B930049G02 gene
Gm22708 2 181425935 to 181426037 102 - snRNA gene predicted gene, 22708
Cpgi12925 2 181458175 to 181460623 2448 CpG island CpG island 12925
Tssr28207 2 181459364 to 181459439 75 - TSS region transcription start site region 28207
Tssr28208 2 181483586 to 181483652 66 - TSS region transcription start site region 28208
Tssr28209 2 181492963 to 181493004 41 - TSS region transcription start site region 28209
Tssr22312 2 181493185 to 181493220 35 + TSS region transcription start site region 22312
Abhd16b 2 181493206 to 181494980 1774 + protein coding gene abhydrolase domain containing 16B
Cpgi12926 2 181493516 to 181493855 339 CpG island CpG island 12926
Cpgi12927 2 181494299 to 181494640 341 CpG island CpG island 12927
Cpgi12928 2 181496853 to 181497747 894 CpG island CpG island 12928
Tssr28210 2 181496978 to 181497008 30 - TSS region transcription start site region 28210
Tpd52l2 2 181497142 to 181517966 20824 + protein coding gene tumor protein D52-like 2
Tssr22313 2 181497169 to 181497216 47 + TSS region transcription start site region 22313
Tssr22314 2 181497223 to 181497244 21 + TSS region transcription start site region 22314
Tssr28211 2 181498772 to 181498779 7 - TSS region transcription start site region 28211
Tssr22315 2 181506702 to 181506706 4 + TSS region transcription start site region 22315
Tssr22316 2 181511224 to 181511231 7 + TSS region transcription start site region 22316
Gm25184 2 181512550 to 181512712 162 + snRNA gene predicted gene, 25184