Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:180732931-181052939

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc17a9 2 180725263 to 180742280 17017 + protein coding gene solute carrier family 17, member 9
Tssr22271 2 180738197 to 180738223 26 + TSS region transcription start site region 22271
Gm14343 2 180766214 to 180775403 9189 - unclassified non-coding RNA gene predicted gene 14343
Bhlhe23 2 180774381 to 180776900 2519 - protein coding gene basic helix-loop-helix family, member e23
Cpgi12906 2 180775675 to 180777464 1789 CpG island CpG island 12906
D2Mit463 2 180794454 to 180794749 295 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-463
Gm14340 2 180818343 to 180824630 6287 - lincRNA gene predicted gene 14340
Tssr28135 2 180824596 to 180824607 11 - TSS region transcription start site region 28135
Tssr22272 2 180825702 to 180825704 2 + TSS region transcription start site region 22272
Tssr22273 2 180836195 to 180836198 3 + TSS region transcription start site region 22273
Gm14344 2 180836481 to 180848914 12433 + lincRNA gene predicted gene 14344
Gm22842 2 180837838 to 180837955 117 + unclassified non-coding RNA gene predicted gene, 22842
Gm14342 2 180837970 to 180890778 52808 - lincRNA gene predicted gene 14342
D2Mit74 2 180844614 to 180844766 152 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 74
Alcp5 2 180844614 to 180844766 152 QTL alcohol preference locus 5, male specific
Alcp6 2 180844614 to 180844766 152 QTL alcohol preference locus 6, female specific
Gm14339 2 180847652 to 180849046 1394 + lincRNA gene predicted gene 14339
Tssr28136 2 180889682 to 180889696 14 - TSS region transcription start site region 28136
Tssr28137 2 180889703 to 180889715 12 - TSS region transcription start site region 28137
Cpgi12907 2 180890601 to 180891807 1206 CpG island CpG island 12907
Tssr22274 2 180890675 to 180890686 11 + TSS region transcription start site region 22274
2810461L16Rik 2 180890683 to 180890965 282 unclassified gene RIKEN cDNA 2810461L16 gene
Tssr22275 2 180890687 to 180890698 11 + TSS region transcription start site region 22275
Tssr22276 2 180890699 to 180890712 13 + TSS region transcription start site region 22276
Tssr22277 2 180890834 to 180890853 19 + TSS region transcription start site region 22277
Cpgi12908 2 180892453 to 180894923 2470 CpG island CpG island 12908
Tssr28138 2 180892931 to 180892939 8 - TSS region transcription start site region 28138
Tssr22278 2 180893121 to 180893138 17 + TSS region transcription start site region 22278
Tssr28139 2 180893401 to 180893404 3 - TSS region transcription start site region 28139
Tssr28140 2 180893408 to 180893422 14 - TSS region transcription start site region 28140
Mir124a-3 2 180894040 to 180894107 67 + miRNA gene microRNA 124a-3
Gm27032 2 180894105 to 180895220 1115 + lincRNA gene predicted gene, 27032
Ythdf1 2 180904377 to 180920936 16559 - protein coding gene YTH N6-methyladenosine RNA binding protein 1
Tssr28141 2 180909823 to 180909827 4 - TSS region transcription start site region 28141
Tssr28142 2 180911543 to 180911571 28 - TSS region transcription start site region 28142
Cpgi12909 2 180920189 to 180921463 1274 CpG island CpG island 12909
Tssr28143 2 180920889 to 180920923 34 - TSS region transcription start site region 28143
Tssr28144 2 180920925 to 180920964 39 - TSS region transcription start site region 28144
Tssr28145 2 180920995 to 180921010 15 - TSS region transcription start site region 28145
Tssr28146 2 180921015 to 180921022 7 - TSS region transcription start site region 28146
Tssr22279 2 180929000 to 180929046 46 + TSS region transcription start site region 22279
Birc7 2 180929023 to 180934010 4987 + protein coding gene baculoviral IAP repeat-containing 7 (livin)
Nkain4 2 180934772 to 180954699 19927 - protein coding gene Na+/K+ transporting ATPase interacting 4
Tssr28147 2 180935997 to 180936011 14 - TSS region transcription start site region 28147
Cpgi12910 2 180954224 to 180954998 774 CpG island CpG island 12910
Gm14341 2 180954464 to 180966812 12348 + antisense lncRNA gene predicted gene 14341
Tssr28148 2 180954647 to 180954670 23 - TSS region transcription start site region 28148
Tssr28149 2 180954676 to 180954708 32 - TSS region transcription start site region 28149
Cpgi12911 2 180966953 to 180967823 870 CpG island CpG island 12911
Tssr22280 2 180967218 to 180967289 71 + TSS region transcription start site region 22280
Arfgap1 2 180967225 to 180982526 15301 + protein coding gene ADP-ribosylation factor GTPase activating protein 1
Tssr22281 2 180967291 to 180967303 12 + TSS region transcription start site region 22281
Tssr22282 2 180967624 to 180967637 13 + TSS region transcription start site region 22282
Tssr22283 2 180974321 to 180974325 4 + TSS region transcription start site region 22283
9230112E08Rik 2 180983924 to 180987275 3351 + sense overlapping lncRNA gene RIKEN cDNA 9230112E08 gene
Tssr22284 2 180985032 to 180985071 39 + TSS region transcription start site region 22284
Col20a1 2 180986535 to 181018363 31828 + protein coding gene collagen, type XX, alpha 1
Gm30797 2 181011991 to 181013150 1159 - lncRNA gene predicted gene, 30797
Tssr28150 2 181013248 to 181013298 50 - TSS region transcription start site region 28150
Tssr22285 2 181013434 to 181013445 11 + TSS region transcription start site region 22285
Tssr28151 2 181020428 to 181020449 21 - TSS region transcription start site region 28151
Tssr28152 2 181020577 to 181020586 9 - TSS region transcription start site region 28152
Chrna4 2 181022311 to 181043580 21269 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 4
Tssr28153 2 181029302 to 181029319 17 - TSS region transcription start site region 28153
Cpgi12912 2 181038530 to 181039824 1294 CpG island CpG island 12912
Tssr28154 2 181039160 to 181039192 32 - TSS region transcription start site region 28154
Tssr28155 2 181039195 to 181039228 33 - TSS region transcription start site region 28155
Tssr28156 2 181039232 to 181039282 50 - TSS region transcription start site region 28156
Tssr28157 2 181039286 to 181039320 34 - TSS region transcription start site region 28157
Tssr28158 2 181043540 to 181043554 14 - TSS region transcription start site region 28158
Tssr28159 2 181043591 to 181043604 13 - TSS region transcription start site region 28159