Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:180410117-181018733

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit230 2 180418266 to 180418403 137 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 230
Tssr28104 2 180429784 to 180429828 44 - TSS region transcription start site region 28104
Tssr28105 2 180439484 to 180439485 1 - TSS region transcription start site region 28105
Tssr28106 2 180439486 to 180439521 35 - TSS region transcription start site region 28106
Tssr28107 2 180439522 to 180439528 6 - TSS region transcription start site region 28107
Tssr28108 2 180439553 to 180439560 7 - TSS region transcription start site region 28108
Tssr28109 2 180439869 to 180439904 35 - TSS region transcription start site region 28109
Tssr22236 2 180440031 to 180440050 19 + TSS region transcription start site region 22236
Tssr22237 2 180442266 to 180442277 11 + TSS region transcription start site region 22237
Tssr22238 2 180443043 to 180443064 21 + TSS region transcription start site region 22238
Tssr28110 2 180443815 to 180443834 19 - TSS region transcription start site region 28110
Tssr28111 2 180443886 to 180443933 47 - TSS region transcription start site region 28111
Tssr22239 2 180444041 to 180444053 12 + TSS region transcription start site region 22239
Tssr22240 2 180454929 to 180454934 5 + TSS region transcription start site region 22240
Cpgi12895 2 180455816 to 180457177 1361 CpG island CpG island 12895
Tssr28112 2 180456094 to 180456105 11 - TSS region transcription start site region 28112
Tssr22241 2 180456234 to 180456246 12 + TSS region transcription start site region 22241
Slco4a1 2 180456250 to 180474853 18603 + protein coding gene solute carrier organic anion transporter family, member 4a1
Tssr22242 2 180456299 to 180456302 3 + TSS region transcription start site region 22242
Tssr22243 2 180456307 to 180456341 34 + TSS region transcription start site region 22243
Tssr22244 2 180460988 to 180460997 9 + TSS region transcription start site region 22244
Tssr22245 2 180461032 to 180461041 9 + TSS region transcription start site region 22245
Tssr22246 2 180464041 to 180464065 24 + TSS region transcription start site region 22246
Cpgi12896 2 180482469 to 180482635 166 CpG island CpG island 12896
D2Frk2 2 180487975 to 180488149 174 DNA segment DNA segment, Chr 2, Frankel 2
Cpgi12897 2 180499542 to 180500694 1152 CpG island CpG island 12897
Tssr22247 2 180499893 to 180499919 26 + TSS region transcription start site region 22247
Ntsr1 2 180499976 to 180544979 45003 + protein coding gene neurotensin receptor 1
Tssr805 2 180510283 to 180510284 1 + TSS region transcription start site region 805
Tssr28113 2 180541418 to 180541423 5 - TSS region transcription start site region 28113
Gm30144 2 180545080 to 180581121 36041 - lncRNA gene predicted gene, 30144
Tssr22248 2 180581199 to 180581219 20 + TSS region transcription start site region 22248
Tssr22249 2 180581220 to 180581243 23 + TSS region transcription start site region 22249
Mrgbp 2 180581304 to 180586304 5000 + protein coding gene MRG/MORF4L binding protein
Cpgi12898 2 180582459 to 180583515 1056 CpG island CpG island 12898
Tssr22250 2 180582726 to 180582742 16 + TSS region transcription start site region 22250
Tssr22251 2 180582750 to 180582777 27 + TSS region transcription start site region 22251
Tssr22252 2 180582780 to 180582798 18 + TSS region transcription start site region 22252
Cpgi12899 2 180589019 to 180590029 1010 CpG island CpG island 12899
Tssr28114 2 180589346 to 180589397 51 - TSS region transcription start site region 28114
Ogfr 2 180589375 to 180595837 6462 + protein coding gene opioid growth factor receptor
Tssr22253 2 180589423 to 180589479 56 + TSS region transcription start site region 22253
Tssr806 2 180589766 to 180589787 21 + TSS region transcription start site region 806
Cpgi12900 2 180598072 to 180598703 631 CpG island CpG island 12900
Col9a3 2 180598102 to 180622185 24083 + protein coding gene collagen, type IX, alpha 3
Tssr22254 2 180598219 to 180598226 7 + TSS region transcription start site region 22254
Tssr22255 2 180598227 to 180598251 24 + TSS region transcription start site region 22255
Tssr22256 2 180601039 to 180601041 2 + TSS region transcription start site region 22256
Tssr22257 2 180604099 to 180604145 46 + TSS region transcription start site region 22257
Tssr22258 2 180604882 to 180604896 14 + TSS region transcription start site region 22258
Tssr807 2 180621796 to 180621803 7 - TSS region transcription start site region 807
Tcfl5 2 180621956 to 180642702 20746 - protein coding gene transcription factor-like 5 (basic helix-loop-helix)
Tssr22259 2 180635090 to 180635121 31 + TSS region transcription start site region 22259
Cpgi12901 2 180641656 to 180643141 1485 CpG island CpG island 12901
Tssr28115 2 180642279 to 180642288 9 - TSS region transcription start site region 28115
Tssr28116 2 180642306 to 180642315 9 - TSS region transcription start site region 28116
Tssr28117 2 180642317 to 180642335 18 - TSS region transcription start site region 28117
Gm30345 2 180642428 to 180665994 23566 + lncRNA gene predicted gene, 30345
Tssr28118 2 180642602 to 180642625 23 - TSS region transcription start site region 28118
Tssr28119 2 180642626 to 180642639 13 - TSS region transcription start site region 28119
Tssr28120 2 180642651 to 180642664 13 - TSS region transcription start site region 28120
Tssr28121 2 180642681 to 180642757 76 - TSS region transcription start site region 28121
Dido1 2 180657964 to 180709999 52035 - protein coding gene death inducer-obliterator 1
Cpgi12902 2 180659353 to 180659743 390 CpG island CpG island 12902
Tssr28122 2 180682632 to 180682636 4 - TSS region transcription start site region 28122
Tssr28123 2 180692854 to 180692873 19 - TSS region transcription start site region 28123
Gm22502 2 180698063 to 180698169 106 + snRNA gene predicted gene, 22502
Tssr28124 2 180701152 to 180701167 15 - TSS region transcription start site region 28124
C130092D22Rik 2 180701239 to 180707162 5923 unclassified non-coding RNA gene RIKEN cDNA C130092D22 gene
Cpgi12903 2 180701405 to 180702463 1058 CpG island CpG island 12903
Tssr28125 2 180701997 to 180702046 49 - TSS region transcription start site region 28125
Tssr28126 2 180702047 to 180702115 68 - TSS region transcription start site region 28126
Tssr28127 2 180709040 to 180709074 34 - TSS region transcription start site region 28127
Tssr28128 2 180709080 to 180709101 21 - TSS region transcription start site region 28128
Tssr28129 2 180709119 to 180709149 30 - TSS region transcription start site region 28129
Tssr22260 2 180709308 to 180709320 12 + TSS region transcription start site region 22260
Cpgi12904 2 180709456 to 180710946 1490 CpG island CpG island 12904
Tssr28130 2 180709809 to 180709822 13 - TSS region transcription start site region 28130
Tssr28131 2 180709985 to 180710017 32 - TSS region transcription start site region 28131
Tssr28132 2 180710030 to 180710081 51 - TSS region transcription start site region 28132
Gid8 2 180710117 to 180718733 8616 + protein coding gene GID complex subunit 8
Tssr22261 2 180710122 to 180710201 79 + TSS region transcription start site region 22261
Tssr22262 2 180710202 to 180710216 14 + TSS region transcription start site region 22262
Tssr22263 2 180710220 to 180710274 54 + TSS region transcription start site region 22263
Tssr808 2 180710286 to 180710287 1 + TSS region transcription start site region 808
Tssr22264 2 180710291 to 180710300 9 + TSS region transcription start site region 22264
Tssr22265 2 180710311 to 180710327 16 + TSS region transcription start site region 22265
Tssr22266 2 180710342 to 180710358 16 + TSS region transcription start site region 22266
Tssr28133 2 180711611 to 180711647 36 - TSS region transcription start site region 28133
Gm30455 2 180721657 to 180725164 3507 - lncRNA gene predicted gene, 30455
Cpgi12905 2 180725171 to 180725381 210 CpG island CpG island 12905
Slc17a9 2 180725263 to 180742280 17017 + protein coding gene solute carrier family 17, member 9
Tssr22267 2 180725330 to 180725383 53 + TSS region transcription start site region 22267
Tssr28134 2 180726761 to 180726766 5 - TSS region transcription start site region 28134
Tssr22268 2 180732228 to 180732271 43 + TSS region transcription start site region 22268
Tssr22269 2 180732275 to 180732286 11 + TSS region transcription start site region 22269
Tssr22270 2 180732290 to 180732297 7 + TSS region transcription start site region 22270
Tssr22271 2 180738197 to 180738223 26 + TSS region transcription start site region 22271
Gm14343 2 180766214 to 180775403 9189 - unclassified non-coding RNA gene predicted gene 14343
Bhlhe23 2 180774381 to 180776900 2519 - protein coding gene basic helix-loop-helix family, member e23
Cpgi12906 2 180775675 to 180777464 1789 CpG island CpG island 12906
D2Mit463 2 180794454 to 180794749 295 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-463
Gm14340 2 180818343 to 180824630 6287 - lincRNA gene predicted gene 14340
Tssr28135 2 180824596 to 180824607 11 - TSS region transcription start site region 28135
Tssr22272 2 180825702 to 180825704 2 + TSS region transcription start site region 22272
Tssr22273 2 180836195 to 180836198 3 + TSS region transcription start site region 22273
Gm14344 2 180836481 to 180848914 12433 + lincRNA gene predicted gene 14344
Gm22842 2 180837838 to 180837955 117 + unclassified non-coding RNA gene predicted gene, 22842
Gm14342 2 180837970 to 180890778 52808 - lincRNA gene predicted gene 14342
Alcp5 2 180844614 to 180844766 152 QTL alcohol preference locus 5, male specific
Alcp6 2 180844614 to 180844766 152 QTL alcohol preference locus 6, female specific
D2Mit74 2 180844614 to 180844766 152 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 74
Gm14339 2 180847652 to 180849046 1394 + lincRNA gene predicted gene 14339
Tssr28136 2 180889682 to 180889696 14 - TSS region transcription start site region 28136
Tssr28137 2 180889703 to 180889715 12 - TSS region transcription start site region 28137
Cpgi12907 2 180890601 to 180891807 1206 CpG island CpG island 12907
Tssr22274 2 180890675 to 180890686 11 + TSS region transcription start site region 22274
2810461L16Rik 2 180890683 to 180890965 282 unclassified gene RIKEN cDNA 2810461L16 gene
Tssr22275 2 180890687 to 180890698 11 + TSS region transcription start site region 22275
Tssr22276 2 180890699 to 180890712 13 + TSS region transcription start site region 22276
Tssr22277 2 180890834 to 180890853 19 + TSS region transcription start site region 22277
Cpgi12908 2 180892453 to 180894923 2470 CpG island CpG island 12908
Tssr28138 2 180892931 to 180892939 8 - TSS region transcription start site region 28138
Tssr22278 2 180893121 to 180893138 17 + TSS region transcription start site region 22278
Tssr28139 2 180893401 to 180893404 3 - TSS region transcription start site region 28139
Tssr28140 2 180893408 to 180893422 14 - TSS region transcription start site region 28140
Mir124a-3 2 180894040 to 180894107 67 + miRNA gene microRNA 124a-3
Gm27032 2 180894105 to 180895220 1115 + lincRNA gene predicted gene, 27032
Ythdf1 2 180904377 to 180920936 16559 - protein coding gene YTH N6-methyladenosine RNA binding protein 1
Tssr28141 2 180909823 to 180909827 4 - TSS region transcription start site region 28141
Tssr28142 2 180911543 to 180911571 28 - TSS region transcription start site region 28142
Cpgi12909 2 180920189 to 180921463 1274 CpG island CpG island 12909
Tssr28143 2 180920889 to 180920923 34 - TSS region transcription start site region 28143
Tssr28144 2 180920925 to 180920964 39 - TSS region transcription start site region 28144
Tssr28145 2 180920995 to 180921010 15 - TSS region transcription start site region 28145
Tssr28146 2 180921015 to 180921022 7 - TSS region transcription start site region 28146
Tssr22279 2 180929000 to 180929046 46 + TSS region transcription start site region 22279
Birc7 2 180929023 to 180934010 4987 + protein coding gene baculoviral IAP repeat-containing 7 (livin)
Nkain4 2 180934772 to 180954699 19927 - protein coding gene Na+/K+ transporting ATPase interacting 4
Tssr28147 2 180935997 to 180936011 14 - TSS region transcription start site region 28147
Cpgi12910 2 180954224 to 180954998 774 CpG island CpG island 12910
Gm14341 2 180954464 to 180966812 12348 + antisense lncRNA gene predicted gene 14341
Tssr28148 2 180954647 to 180954670 23 - TSS region transcription start site region 28148
Tssr28149 2 180954676 to 180954708 32 - TSS region transcription start site region 28149
Cpgi12911 2 180966953 to 180967823 870 CpG island CpG island 12911
Tssr22280 2 180967218 to 180967289 71 + TSS region transcription start site region 22280
Arfgap1 2 180967225 to 180982526 15301 + protein coding gene ADP-ribosylation factor GTPase activating protein 1
Tssr22281 2 180967291 to 180967303 12 + TSS region transcription start site region 22281
Tssr22282 2 180967624 to 180967637 13 + TSS region transcription start site region 22282
Tssr22283 2 180974321 to 180974325 4 + TSS region transcription start site region 22283
9230112E08Rik 2 180983924 to 180987275 3351 + sense overlapping lncRNA gene RIKEN cDNA 9230112E08 gene
Tssr22284 2 180985032 to 180985071 39 + TSS region transcription start site region 22284
Col20a1 2 180986535 to 181018363 31828 + protein coding gene collagen, type XX, alpha 1
Gm30797 2 181011991 to 181013150 1159 - lncRNA gene predicted gene, 30797
Tssr28150 2 181013248 to 181013298 50 - TSS region transcription start site region 28150
Tssr22285 2 181013434 to 181013445 11 + TSS region transcription start site region 22285