Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:180399976-180644979

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mir1a-1hg 2 180385604 to 180401802 16198 + lncRNA gene Mir1a-1 and Mir133a-2 host gene
D2Mit230 2 180418266 to 180418403 137 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 230
Tssr28104 2 180429784 to 180429828 44 - TSS region transcription start site region 28104
Tssr28105 2 180439484 to 180439485 1 - TSS region transcription start site region 28105
Tssr28106 2 180439486 to 180439521 35 - TSS region transcription start site region 28106
Tssr28107 2 180439522 to 180439528 6 - TSS region transcription start site region 28107
Tssr28108 2 180439553 to 180439560 7 - TSS region transcription start site region 28108
Tssr28109 2 180439869 to 180439904 35 - TSS region transcription start site region 28109
Tssr22236 2 180440031 to 180440050 19 + TSS region transcription start site region 22236
Tssr22237 2 180442266 to 180442277 11 + TSS region transcription start site region 22237
Tssr22238 2 180443043 to 180443064 21 + TSS region transcription start site region 22238
Tssr28110 2 180443815 to 180443834 19 - TSS region transcription start site region 28110
Tssr28111 2 180443886 to 180443933 47 - TSS region transcription start site region 28111
Tssr22239 2 180444041 to 180444053 12 + TSS region transcription start site region 22239
Tssr22240 2 180454929 to 180454934 5 + TSS region transcription start site region 22240
Cpgi12895 2 180455816 to 180457177 1361 CpG island CpG island 12895
Tssr28112 2 180456094 to 180456105 11 - TSS region transcription start site region 28112
Tssr22241 2 180456234 to 180456246 12 + TSS region transcription start site region 22241
Slco4a1 2 180456250 to 180474853 18603 + protein coding gene solute carrier organic anion transporter family, member 4a1
Tssr22242 2 180456299 to 180456302 3 + TSS region transcription start site region 22242
Tssr22243 2 180456307 to 180456341 34 + TSS region transcription start site region 22243
Tssr22244 2 180460988 to 180460997 9 + TSS region transcription start site region 22244
Tssr22245 2 180461032 to 180461041 9 + TSS region transcription start site region 22245
Tssr22246 2 180464041 to 180464065 24 + TSS region transcription start site region 22246
Cpgi12896 2 180482469 to 180482635 166 CpG island CpG island 12896
D2Frk2 2 180487975 to 180488149 174 DNA segment DNA segment, Chr 2, Frankel 2
Cpgi12897 2 180499542 to 180500694 1152 CpG island CpG island 12897
Tssr22247 2 180499893 to 180499919 26 + TSS region transcription start site region 22247
Ntsr1 2 180499976 to 180544979 45003 + protein coding gene neurotensin receptor 1
Tssr805 2 180510283 to 180510284 1 + TSS region transcription start site region 805
Tssr28113 2 180541418 to 180541423 5 - TSS region transcription start site region 28113
Gm30144 2 180545080 to 180581121 36041 - lncRNA gene predicted gene, 30144
Tssr22248 2 180581199 to 180581219 20 + TSS region transcription start site region 22248
Tssr22249 2 180581220 to 180581243 23 + TSS region transcription start site region 22249
Mrgbp 2 180581304 to 180586304 5000 + protein coding gene MRG/MORF4L binding protein
Cpgi12898 2 180582459 to 180583515 1056 CpG island CpG island 12898
Tssr22250 2 180582726 to 180582742 16 + TSS region transcription start site region 22250
Tssr22251 2 180582750 to 180582777 27 + TSS region transcription start site region 22251
Tssr22252 2 180582780 to 180582798 18 + TSS region transcription start site region 22252
Cpgi12899 2 180589019 to 180590029 1010 CpG island CpG island 12899
Tssr28114 2 180589346 to 180589397 51 - TSS region transcription start site region 28114
Ogfr 2 180589375 to 180595837 6462 + protein coding gene opioid growth factor receptor
Tssr22253 2 180589423 to 180589479 56 + TSS region transcription start site region 22253
Tssr806 2 180589766 to 180589787 21 + TSS region transcription start site region 806
Cpgi12900 2 180598072 to 180598703 631 CpG island CpG island 12900
Col9a3 2 180598102 to 180622185 24083 + protein coding gene collagen, type IX, alpha 3
Tssr22254 2 180598219 to 180598226 7 + TSS region transcription start site region 22254
Tssr22255 2 180598227 to 180598251 24 + TSS region transcription start site region 22255
Tssr22256 2 180601039 to 180601041 2 + TSS region transcription start site region 22256
Tssr22257 2 180604099 to 180604145 46 + TSS region transcription start site region 22257
Tssr22258 2 180604882 to 180604896 14 + TSS region transcription start site region 22258
Tssr807 2 180621796 to 180621803 7 - TSS region transcription start site region 807
Tcfl5 2 180621956 to 180642702 20746 - protein coding gene transcription factor-like 5 (basic helix-loop-helix)
Tssr22259 2 180635090 to 180635121 31 + TSS region transcription start site region 22259
Cpgi12901 2 180641656 to 180643141 1485 CpG island CpG island 12901
Tssr28115 2 180642279 to 180642288 9 - TSS region transcription start site region 28115
Tssr28116 2 180642306 to 180642315 9 - TSS region transcription start site region 28116
Tssr28117 2 180642317 to 180642335 18 - TSS region transcription start site region 28117
Gm30345 2 180642428 to 180665994 23566 + lncRNA gene predicted gene, 30345
Tssr28118 2 180642602 to 180642625 23 - TSS region transcription start site region 28118
Tssr28119 2 180642626 to 180642639 13 - TSS region transcription start site region 28119
Tssr28120 2 180642651 to 180642664 13 - TSS region transcription start site region 28120
Tssr28121 2 180642681 to 180642757 76 - TSS region transcription start site region 28121