Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:180273634-180395202

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi12890 2 180272647 to 180274247 1600 CpG island CpG island 12890
Tssr28092 2 180276852 to 180276872 20 - TSS region transcription start site region 28092
Rbbp8nl 2 180277646 to 180289879 12233 - protein coding gene RBBP8 N-terminal like
Gm29943 2 180290695 to 180312765 22070 + lncRNA gene predicted gene, 29943
Tssr22218 2 180290713 to 180290731 18 + TSS region transcription start site region 22218
Tssr22219 2 180290737 to 180290750 13 + TSS region transcription start site region 22219
Gata5 2 180325133 to 180334699 9566 - protein coding gene GATA binding protein 5
Tssr22220 2 180332390 to 180332402 12 + TSS region transcription start site region 22220
Gata5os 2 180332857 to 180340732 7875 + antisense lncRNA gene GATA binding protein 5, opposite strand
Cpgi12891 2 180333634 to 180335202 1568 CpG island CpG island 12891
Tssr28093 2 180334665 to 180334704 39 - TSS region transcription start site region 28093
Tssr28094 2 180334705 to 180334716 11 - TSS region transcription start site region 28094
Tssr28095 2 180334718 to 180334729 11 - TSS region transcription start site region 28095
Tssr28096 2 180334935 to 180334955 20 - TSS region transcription start site region 28096
Cpgi12892 2 180353460 to 180353786 326 CpG island CpG island 12892
B230312C02Rik 2 180370858 to 180385885 15027 - lincRNA gene RIKEN cDNA B230312C02 gene
Tssr28097 2 180381062 to 180381071 9 - TSS region transcription start site region 28097
Tssr803 2 180381146 to 180381147 1 - TSS region transcription start site region 803
Tssr804 2 180381186 to 180381192 6 - TSS region transcription start site region 804
Tssr28098 2 180381201 to 180381210 9 - TSS region transcription start site region 28098
Tssr28099 2 180381216 to 180381223 7 - TSS region transcription start site region 28099
Tssr28100 2 180381230 to 180381244 14 - TSS region transcription start site region 28100
Tssr28101 2 180381324 to 180381332 8 - TSS region transcription start site region 28101
Cpgi12893 2 180385526 to 180385846 320 CpG island CpG island 12893
Tssr22221 2 180385599 to 180385617 18 + TSS region transcription start site region 22221
Mir1a-1hg 2 180385604 to 180401802 16198 + lncRNA gene Mir1a-1 and Mir133a-2 host gene
Cpgi12894 2 180386015 to 180386546 531 CpG island CpG island 12894
Tssr28102 2 180386753 to 180386763 10 - TSS region transcription start site region 28102
Tssr28103 2 180386793 to 180386797 4 - TSS region transcription start site region 28103
Tssr22222 2 180388062 to 180388065 3 + TSS region transcription start site region 22222
Mir1a-1 2 180389048 to 180389124 76 + miRNA gene microRNA 1a-1
Tssr22223 2 180389119 to 180389122 3 + TSS region transcription start site region 22223
Tssr22224 2 180392034 to 180392037 3 + TSS region transcription start site region 22224
Tssr22225 2 180394300 to 180394309 9 + TSS region transcription start site region 22225
Tssr22226 2 180394318 to 180394329 11 + TSS region transcription start site region 22226
Tssr22227 2 180394355 to 180394372 17 + TSS region transcription start site region 22227
Tssr22228 2 180394379 to 180394398 19 + TSS region transcription start site region 22228
Tssr22229 2 180394422 to 180394448 26 + TSS region transcription start site region 22229
Tssr22230 2 180394466 to 180394496 30 + TSS region transcription start site region 22230
Tssr22231 2 180394518 to 180394536 18 + TSS region transcription start site region 22231