Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:180234466-180554496

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr28084 2 180234983 to 180234998 15 - TSS region transcription start site region 28084
Tssr22215 2 180235136 to 180235150 14 + TSS region transcription start site region 22215
Tssr28085 2 180236610 to 180236620 10 - TSS region transcription start site region 28085
Cpgi12889 2 180256601 to 180257947 1346 CpG island CpG island 12889
Tssr28086 2 180257105 to 180257118 13 - TSS region transcription start site region 28086
Tssr28087 2 180257119 to 180257162 43 - TSS region transcription start site region 28087
Tssr22216 2 180257373 to 180257396 23 + TSS region transcription start site region 22216
Rps21 2 180257377 to 180258445 1068 + protein coding gene ribosomal protein S21
Tssr22217 2 180257405 to 180257428 23 + TSS region transcription start site region 22217
Mir3091 2 180257536 to 180257611 75 + miRNA gene microRNA 3091
Cables2 2 180258539 to 180273490 14951 - protein coding gene CDK5 and Abl enzyme substrate 2
Tssr28088 2 180262580 to 180262595 15 - TSS region transcription start site region 28088
Cpgi12890 2 180272647 to 180274247 1600 CpG island CpG island 12890
Tssr28089 2 180273374 to 180273414 40 - TSS region transcription start site region 28089
Tssr28090 2 180273443 to 180273478 35 - TSS region transcription start site region 28090
Tssr28091 2 180273488 to 180273502 14 - TSS region transcription start site region 28091
Tssr28092 2 180276852 to 180276872 20 - TSS region transcription start site region 28092
Rbbp8nl 2 180277646 to 180289879 12233 - protein coding gene RBBP8 N-terminal like
Gm29943 2 180290695 to 180312765 22070 + lncRNA gene predicted gene, 29943
Tssr22218 2 180290713 to 180290731 18 + TSS region transcription start site region 22218
Tssr22219 2 180290737 to 180290750 13 + TSS region transcription start site region 22219
Gata5 2 180325133 to 180334699 9566 - protein coding gene GATA binding protein 5
Tssr22220 2 180332390 to 180332402 12 + TSS region transcription start site region 22220
Gata5os 2 180332857 to 180340732 7875 + antisense lncRNA gene GATA binding protein 5, opposite strand
Cpgi12891 2 180333634 to 180335202 1568 CpG island CpG island 12891
Tssr28093 2 180334665 to 180334704 39 - TSS region transcription start site region 28093
Tssr28094 2 180334705 to 180334716 11 - TSS region transcription start site region 28094
Tssr28095 2 180334718 to 180334729 11 - TSS region transcription start site region 28095
Tssr28096 2 180334935 to 180334955 20 - TSS region transcription start site region 28096
Cpgi12892 2 180353460 to 180353786 326 CpG island CpG island 12892
B230312C02Rik 2 180370858 to 180385885 15027 - lincRNA gene RIKEN cDNA B230312C02 gene
Tssr28097 2 180381062 to 180381071 9 - TSS region transcription start site region 28097
Tssr803 2 180381146 to 180381147 1 - TSS region transcription start site region 803
Tssr804 2 180381186 to 180381192 6 - TSS region transcription start site region 804
Tssr28098 2 180381201 to 180381210 9 - TSS region transcription start site region 28098
Tssr28099 2 180381216 to 180381223 7 - TSS region transcription start site region 28099
Tssr28100 2 180381230 to 180381244 14 - TSS region transcription start site region 28100
Tssr28101 2 180381324 to 180381332 8 - TSS region transcription start site region 28101
Cpgi12893 2 180385526 to 180385846 320 CpG island CpG island 12893
Tssr22221 2 180385599 to 180385617 18 + TSS region transcription start site region 22221
Mir1a-1hg 2 180385604 to 180401802 16198 + lncRNA gene Mir1a-1 and Mir133a-2 host gene
Cpgi12894 2 180386015 to 180386546 531 CpG island CpG island 12894
Tssr28102 2 180386753 to 180386763 10 - TSS region transcription start site region 28102
Tssr28103 2 180386793 to 180386797 4 - TSS region transcription start site region 28103
Tssr22222 2 180388062 to 180388065 3 + TSS region transcription start site region 22222
Mir1a-1 2 180389048 to 180389124 76 + miRNA gene microRNA 1a-1
Tssr22223 2 180389119 to 180389122 3 + TSS region transcription start site region 22223
Tssr22224 2 180392034 to 180392037 3 + TSS region transcription start site region 22224
Tssr22225 2 180394300 to 180394309 9 + TSS region transcription start site region 22225
Tssr22226 2 180394318 to 180394329 11 + TSS region transcription start site region 22226
Tssr22227 2 180394355 to 180394372 17 + TSS region transcription start site region 22227
Tssr22228 2 180394379 to 180394398 19 + TSS region transcription start site region 22228
Tssr22229 2 180394422 to 180394448 26 + TSS region transcription start site region 22229
Tssr22230 2 180394466 to 180394496 30 + TSS region transcription start site region 22230
Tssr22231 2 180394518 to 180394536 18 + TSS region transcription start site region 22231
Tssr22232 2 180396901 to 180396912 11 + TSS region transcription start site region 22232
Tssr22233 2 180397308 to 180397333 25 + TSS region transcription start site region 22233
Tssr22234 2 180397341 to 180397355 14 + TSS region transcription start site region 22234
Mir133a-2 2 180398379 to 180398482 103 + miRNA gene microRNA 133a-2
Tssr22235 2 180398456 to 180398462 6 + TSS region transcription start site region 22235
D2Mit230 2 180418266 to 180418403 137 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 230
Tssr28104 2 180429784 to 180429828 44 - TSS region transcription start site region 28104
Tssr28105 2 180439484 to 180439485 1 - TSS region transcription start site region 28105
Tssr28106 2 180439486 to 180439521 35 - TSS region transcription start site region 28106
Tssr28107 2 180439522 to 180439528 6 - TSS region transcription start site region 28107
Tssr28108 2 180439553 to 180439560 7 - TSS region transcription start site region 28108
Tssr28109 2 180439869 to 180439904 35 - TSS region transcription start site region 28109
Tssr22236 2 180440031 to 180440050 19 + TSS region transcription start site region 22236
Tssr22237 2 180442266 to 180442277 11 + TSS region transcription start site region 22237
Tssr22238 2 180443043 to 180443064 21 + TSS region transcription start site region 22238
Tssr28110 2 180443815 to 180443834 19 - TSS region transcription start site region 28110
Tssr28111 2 180443886 to 180443933 47 - TSS region transcription start site region 28111
Tssr22239 2 180444041 to 180444053 12 + TSS region transcription start site region 22239
Tssr22240 2 180454929 to 180454934 5 + TSS region transcription start site region 22240
Cpgi12895 2 180455816 to 180457177 1361 CpG island CpG island 12895
Tssr28112 2 180456094 to 180456105 11 - TSS region transcription start site region 28112
Tssr22241 2 180456234 to 180456246 12 + TSS region transcription start site region 22241
Slco4a1 2 180456250 to 180474853 18603 + protein coding gene solute carrier organic anion transporter family, member 4a1
Tssr22242 2 180456299 to 180456302 3 + TSS region transcription start site region 22242
Tssr22243 2 180456307 to 180456341 34 + TSS region transcription start site region 22243
Tssr22244 2 180460988 to 180460997 9 + TSS region transcription start site region 22244
Tssr22245 2 180461032 to 180461041 9 + TSS region transcription start site region 22245
Tssr22246 2 180464041 to 180464065 24 + TSS region transcription start site region 22246
Cpgi12896 2 180482469 to 180482635 166 CpG island CpG island 12896
D2Frk2 2 180487975 to 180488149 174 DNA segment DNA segment, Chr 2, Frankel 2
Cpgi12897 2 180499542 to 180500694 1152 CpG island CpG island 12897
Tssr22247 2 180499893 to 180499919 26 + TSS region transcription start site region 22247
Ntsr1 2 180499976 to 180544979 45003 + protein coding gene neurotensin receptor 1
Tssr805 2 180510283 to 180510284 1 + TSS region transcription start site region 805
Tssr28113 2 180541418 to 180541423 5 - TSS region transcription start site region 28113
Gm30144 2 180545080 to 180581121 36041 - lncRNA gene predicted gene, 30144