Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:180059861-180391227

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ss18l1 2 180042509 to 180070201 27692 + protein coding gene SS18, nBAF chromatin remodeling complex subunit like 1
Cpgi12883 2 180070324 to 180071231 907 CpG island CpG island 12883
Tssr22207 2 180070576 to 180070611 35 + TSS region transcription start site region 22207
Mtg2 2 180070593 to 180085902 15309 + protein coding gene mitochondrial ribosome associated GTPase 2
Hrh3 2 180099465 to 180104407 4942 - protein coding gene histamine receptor H3
Tssr22208 2 180099838 to 180099847 9 + TSS region transcription start site region 22208
Gm17180 2 180099913 to 180101502 1589 + antisense lncRNA gene predicted gene 17180
Cpgi12884 2 180100559 to 180100890 331 CpG island CpG island 12884
Cpgi12885 2 180103069 to 180105244 2175 CpG island CpG island 12885
Tssr801 2 180104400 to 180104426 26 - TSS region transcription start site region 801
Tssr28077 2 180104443 to 180104454 11 - TSS region transcription start site region 28077
Tssr28078 2 180104463 to 180104478 15 - TSS region transcription start site region 28078
Gm46782 2 180104738 to 180110751 6013 - lncRNA gene predicted gene, 46782
Cpgi12886 2 180118828 to 180120172 1344 CpG island CpG island 12886
Tssr22209 2 180119301 to 180119407 106 + TSS region transcription start site region 22209
Osbpl2 2 180119366 to 180162682 43316 + protein coding gene oxysterol binding protein-like 2
Tssr22210 2 180120643 to 180120648 5 + TSS region transcription start site region 22210
Gm29886 2 180149659 to 180171871 22212 - lncRNA gene predicted gene, 29886
Tssr22211 2 180170355 to 180170403 48 + TSS region transcription start site region 22211
Cpgi12887 2 180170856 to 180172498 1642 CpG island CpG island 12887
Adrm1 2 180171490 to 180176284 4794 + protein coding gene adhesion regulating molecule 1
Tssr22212 2 180171562 to 180171573 11 + TSS region transcription start site region 22212
Tssr802 2 180171574 to 180171581 7 + TSS region transcription start site region 802
Tssr22213 2 180171589 to 180171658 69 + TSS region transcription start site region 22213
Tssr22214 2 180171949 to 180171962 13 + TSS region transcription start site region 22214
Lama5 2 180176373 to 180225859 49486 - protein coding gene laminin, alpha 5
Mir7005 2 180179755 to 180179823 68 - miRNA gene microRNA 7005
Tssr28079 2 180203707 to 180203725 18 - TSS region transcription start site region 28079
Tssr28080 2 180207783 to 180207794 11 - TSS region transcription start site region 28080
D2Wsu85e 2 180220870 to 180221119 249 DNA segment DNA segment, Chr 2, Wayne State University 85, expressed
Cpgi12888 2 180224861 to 180226227 1366 CpG island CpG island 12888
Tssr28081 2 180225812 to 180225872 60 - TSS region transcription start site region 28081
Tssr28082 2 180225908 to 180225919 11 - TSS region transcription start site region 28082
Tssr28083 2 180227701 to 180227737 36 - TSS region transcription start site region 28083
Tssr28084 2 180234983 to 180234998 15 - TSS region transcription start site region 28084
Tssr22215 2 180235136 to 180235150 14 + TSS region transcription start site region 22215
Tssr28085 2 180236610 to 180236620 10 - TSS region transcription start site region 28085
Cpgi12889 2 180256601 to 180257947 1346 CpG island CpG island 12889
Tssr28086 2 180257105 to 180257118 13 - TSS region transcription start site region 28086
Tssr28087 2 180257119 to 180257162 43 - TSS region transcription start site region 28087
Tssr22216 2 180257373 to 180257396 23 + TSS region transcription start site region 22216
Rps21 2 180257377 to 180258445 1068 + protein coding gene ribosomal protein S21
Tssr22217 2 180257405 to 180257428 23 + TSS region transcription start site region 22217
Mir3091 2 180257536 to 180257611 75 + miRNA gene microRNA 3091
Cables2 2 180258539 to 180273490 14951 - protein coding gene CDK5 and Abl enzyme substrate 2
Tssr28088 2 180262580 to 180262595 15 - TSS region transcription start site region 28088
Cpgi12890 2 180272647 to 180274247 1600 CpG island CpG island 12890
Tssr28089 2 180273374 to 180273414 40 - TSS region transcription start site region 28089
Tssr28090 2 180273443 to 180273478 35 - TSS region transcription start site region 28090
Tssr28091 2 180273488 to 180273502 14 - TSS region transcription start site region 28091
Tssr28092 2 180276852 to 180276872 20 - TSS region transcription start site region 28092
Rbbp8nl 2 180277646 to 180289879 12233 - protein coding gene RBBP8 N-terminal like
Gm29943 2 180290695 to 180312765 22070 + lncRNA gene predicted gene, 29943
Tssr22218 2 180290713 to 180290731 18 + TSS region transcription start site region 22218
Tssr22219 2 180290737 to 180290750 13 + TSS region transcription start site region 22219
Gata5 2 180325133 to 180334699 9566 - protein coding gene GATA binding protein 5
Tssr22220 2 180332390 to 180332402 12 + TSS region transcription start site region 22220
Gata5os 2 180332857 to 180340732 7875 + antisense lncRNA gene GATA binding protein 5, opposite strand
Cpgi12891 2 180333634 to 180335202 1568 CpG island CpG island 12891
Tssr28093 2 180334665 to 180334704 39 - TSS region transcription start site region 28093
Tssr28094 2 180334705 to 180334716 11 - TSS region transcription start site region 28094
Tssr28095 2 180334718 to 180334729 11 - TSS region transcription start site region 28095
Tssr28096 2 180334935 to 180334955 20 - TSS region transcription start site region 28096
Cpgi12892 2 180353460 to 180353786 326 CpG island CpG island 12892
B230312C02Rik 2 180370858 to 180385885 15027 - lincRNA gene RIKEN cDNA B230312C02 gene
Tssr28097 2 180381062 to 180381071 9 - TSS region transcription start site region 28097
Tssr803 2 180381146 to 180381147 1 - TSS region transcription start site region 803
Tssr804 2 180381186 to 180381192 6 - TSS region transcription start site region 804
Tssr28098 2 180381201 to 180381210 9 - TSS region transcription start site region 28098
Tssr28099 2 180381216 to 180381223 7 - TSS region transcription start site region 28099
Tssr28100 2 180381230 to 180381244 14 - TSS region transcription start site region 28100
Tssr28101 2 180381324 to 180381332 8 - TSS region transcription start site region 28101
Cpgi12893 2 180385526 to 180385846 320 CpG island CpG island 12893
Tssr22221 2 180385599 to 180385617 18 + TSS region transcription start site region 22221
Mir1a-1hg 2 180385604 to 180401802 16198 + lncRNA gene Mir1a-1 and Mir133a-2 host gene
Cpgi12894 2 180386015 to 180386546 531 CpG island CpG island 12894
Tssr28102 2 180386753 to 180386763 10 - TSS region transcription start site region 28102
Tssr28103 2 180386793 to 180386797 4 - TSS region transcription start site region 28103
Tssr22222 2 180388062 to 180388065 3 + TSS region transcription start site region 22222
Mir1a-1 2 180389048 to 180389124 76 + miRNA gene microRNA 1a-1
Tssr22223 2 180389119 to 180389122 3 + TSS region transcription start site region 22223