Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:179550576-180590611

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdh4 2 179442431 to 179899373 456942 + protein coding gene cadherin 4
Tssr22191 2 179560863 to 179560894 31 + TSS region transcription start site region 22191
Cpgi12879 2 179565811 to 179566091 280 CpG island CpG island 12879
Gm14300 2 179612622 to 179613567 945 - pseudogene predicted gene 14300
4930449I21Rik 2 179650732 to 179651621 889 unclassified gene RIKEN cDNA 4930449I21 gene
D2Mit1002 2 179653841 to 179653971 130 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1002
D2Mit1001 2 179653988 to 179654072 84 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1001
Sluc17 2 179791700 to 179791834 134 QTL susceptibility to lung cancer 17
D2Mit200 2 179791700 to 179791834 134 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 200
Gm36066 2 179794861 to 179805785 10924 - lncRNA gene predicted gene, 36066
Tssr28071 2 179806687 to 179806696 9 - TSS region transcription start site region 28071
Taf4 2 179912152 to 179976646 64494 - protein coding gene TATA-box binding protein associated factor 4
Tssr28072 2 179963873 to 179963884 11 - TSS region transcription start site region 28072
Cpgi12880 2 179974732 to 179977517 2785 CpG island CpG island 12880
Tssr28073 2 179976646 to 179976665 19 - TSS region transcription start site region 28073
Tssr28074 2 179976669 to 179976728 59 - TSS region transcription start site region 28074
Tssr22192 2 179976820 to 179976841 21 + TSS region transcription start site region 22192
4921531C22Rik 2 179976853 to 179979013 2160 + lncRNA gene RIKEN cDNA 4921531C22 gene
Tssr22193 2 179976872 to 179976889 17 + TSS region transcription start site region 22193
Tssr22194 2 179976894 to 179976906 12 + TSS region transcription start site region 22194
Tssr22195 2 179977441 to 179977445 4 + TSS region transcription start site region 22195
Gm14299 2 179993188 to 179993584 396 + pseudogene predicted gene 14299
Cpgi12881 2 180024239 to 180026183 1944 CpG island CpG island 12881
Tssr22196 2 180024903 to 180024914 11 + TSS region transcription start site region 22196
Tssr22197 2 180024951 to 180025007 56 + TSS region transcription start site region 22197
Lsm14b 2 180024987 to 180035465 10478 + protein coding gene LSM family member 14B
Tssr800 2 180025256 to 180025268 12 + TSS region transcription start site region 800
Tssr22198 2 180034610 to 180034617 7 + TSS region transcription start site region 22198
Tssr22199 2 180034816 to 180034850 34 + TSS region transcription start site region 22199
Tssr22200 2 180035081 to 180035085 4 + TSS region transcription start site region 22200
Psma7 2 180036374 to 180042433 6059 - protein coding gene proteasome (prosome, macropain) subunit, alpha type 7
Cpgi12882 2 180041647 to 180043528 1881 CpG island CpG island 12882
Tssr22201 2 180041711 to 180041738 27 + TSS region transcription start site region 22201
Tssr28075 2 180042371 to 180042398 27 - TSS region transcription start site region 28075
Tssr28076 2 180042401 to 180042438 37 - TSS region transcription start site region 28076
Tssr22202 2 180042496 to 180042562 66 + TSS region transcription start site region 22202
Ss18l1 2 180042509 to 180070201 27692 + protein coding gene SS18, nBAF chromatin remodeling complex subunit like 1
Tssr22203 2 180042698 to 180042707 9 + TSS region transcription start site region 22203
Tssr22204 2 180042715 to 180042727 12 + TSS region transcription start site region 22204
Tssr22205 2 180042728 to 180042739 11 + TSS region transcription start site region 22205
Tssr22206 2 180042743 to 180042791 48 + TSS region transcription start site region 22206
Cpgi12883 2 180070324 to 180071231 907 CpG island CpG island 12883
Tssr22207 2 180070576 to 180070611 35 + TSS region transcription start site region 22207
Mtg2 2 180070593 to 180085902 15309 + protein coding gene mitochondrial ribosome associated GTPase 2
Hrh3 2 180099465 to 180104407 4942 - protein coding gene histamine receptor H3
Tssr22208 2 180099838 to 180099847 9 + TSS region transcription start site region 22208
Gm17180 2 180099913 to 180101502 1589 + antisense lncRNA gene predicted gene 17180
Cpgi12884 2 180100559 to 180100890 331 CpG island CpG island 12884
Cpgi12885 2 180103069 to 180105244 2175 CpG island CpG island 12885
Tssr801 2 180104400 to 180104426 26 - TSS region transcription start site region 801
Tssr28077 2 180104443 to 180104454 11 - TSS region transcription start site region 28077
Tssr28078 2 180104463 to 180104478 15 - TSS region transcription start site region 28078
Gm46782 2 180104738 to 180110751 6013 - lncRNA gene predicted gene, 46782
Cpgi12886 2 180118828 to 180120172 1344 CpG island CpG island 12886
Tssr22209 2 180119301 to 180119407 106 + TSS region transcription start site region 22209
Osbpl2 2 180119366 to 180162682 43316 + protein coding gene oxysterol binding protein-like 2
Tssr22210 2 180120643 to 180120648 5 + TSS region transcription start site region 22210
Gm29886 2 180149659 to 180171871 22212 - lncRNA gene predicted gene, 29886
Tssr22211 2 180170355 to 180170403 48 + TSS region transcription start site region 22211
Cpgi12887 2 180170856 to 180172498 1642 CpG island CpG island 12887
Adrm1 2 180171490 to 180176284 4794 + protein coding gene adhesion regulating molecule 1
Tssr22212 2 180171562 to 180171573 11 + TSS region transcription start site region 22212
Tssr802 2 180171574 to 180171581 7 + TSS region transcription start site region 802
Tssr22213 2 180171589 to 180171658 69 + TSS region transcription start site region 22213
Tssr22214 2 180171949 to 180171962 13 + TSS region transcription start site region 22214
Lama5 2 180176373 to 180225859 49486 - protein coding gene laminin, alpha 5
Mir7005 2 180179755 to 180179823 68 - miRNA gene microRNA 7005
Tssr28079 2 180203707 to 180203725 18 - TSS region transcription start site region 28079
Tssr28080 2 180207783 to 180207794 11 - TSS region transcription start site region 28080
D2Wsu85e 2 180220870 to 180221119 249 DNA segment DNA segment, Chr 2, Wayne State University 85, expressed
Cpgi12888 2 180224861 to 180226227 1366 CpG island CpG island 12888
Tssr28081 2 180225812 to 180225872 60 - TSS region transcription start site region 28081
Tssr28082 2 180225908 to 180225919 11 - TSS region transcription start site region 28082
Tssr28083 2 180227701 to 180227737 36 - TSS region transcription start site region 28083
Tssr28084 2 180234983 to 180234998 15 - TSS region transcription start site region 28084
Tssr22215 2 180235136 to 180235150 14 + TSS region transcription start site region 22215
Tssr28085 2 180236610 to 180236620 10 - TSS region transcription start site region 28085
Cpgi12889 2 180256601 to 180257947 1346 CpG island CpG island 12889
Tssr28086 2 180257105 to 180257118 13 - TSS region transcription start site region 28086
Tssr28087 2 180257119 to 180257162 43 - TSS region transcription start site region 28087
Tssr22216 2 180257373 to 180257396 23 + TSS region transcription start site region 22216
Rps21 2 180257377 to 180258445 1068 + protein coding gene ribosomal protein S21
Tssr22217 2 180257405 to 180257428 23 + TSS region transcription start site region 22217
Mir3091 2 180257536 to 180257611 75 + miRNA gene microRNA 3091
Cables2 2 180258539 to 180273490 14951 - protein coding gene CDK5 and Abl enzyme substrate 2
Tssr28088 2 180262580 to 180262595 15 - TSS region transcription start site region 28088
Cpgi12890 2 180272647 to 180274247 1600 CpG island CpG island 12890
Tssr28089 2 180273374 to 180273414 40 - TSS region transcription start site region 28089
Tssr28090 2 180273443 to 180273478 35 - TSS region transcription start site region 28090
Tssr28091 2 180273488 to 180273502 14 - TSS region transcription start site region 28091
Tssr28092 2 180276852 to 180276872 20 - TSS region transcription start site region 28092
Rbbp8nl 2 180277646 to 180289879 12233 - protein coding gene RBBP8 N-terminal like
Gm29943 2 180290695 to 180312765 22070 + lncRNA gene predicted gene, 29943
Tssr22218 2 180290713 to 180290731 18 + TSS region transcription start site region 22218
Tssr22219 2 180290737 to 180290750 13 + TSS region transcription start site region 22219
Gata5 2 180325133 to 180334699 9566 - protein coding gene GATA binding protein 5
Tssr22220 2 180332390 to 180332402 12 + TSS region transcription start site region 22220
Gata5os 2 180332857 to 180340732 7875 + antisense lncRNA gene GATA binding protein 5, opposite strand
Cpgi12891 2 180333634 to 180335202 1568 CpG island CpG island 12891
Tssr28093 2 180334665 to 180334704 39 - TSS region transcription start site region 28093
Tssr28094 2 180334705 to 180334716 11 - TSS region transcription start site region 28094
Tssr28095 2 180334718 to 180334729 11 - TSS region transcription start site region 28095
Tssr28096 2 180334935 to 180334955 20 - TSS region transcription start site region 28096
Cpgi12892 2 180353460 to 180353786 326 CpG island CpG island 12892
B230312C02Rik 2 180370858 to 180385885 15027 - lincRNA gene RIKEN cDNA B230312C02 gene
Tssr28097 2 180381062 to 180381071 9 - TSS region transcription start site region 28097
Tssr803 2 180381146 to 180381147 1 - TSS region transcription start site region 803
Tssr804 2 180381186 to 180381192 6 - TSS region transcription start site region 804
Tssr28098 2 180381201 to 180381210 9 - TSS region transcription start site region 28098
Tssr28099 2 180381216 to 180381223 7 - TSS region transcription start site region 28099
Tssr28100 2 180381230 to 180381244 14 - TSS region transcription start site region 28100
Tssr28101 2 180381324 to 180381332 8 - TSS region transcription start site region 28101
Cpgi12893 2 180385526 to 180385846 320 CpG island CpG island 12893
Tssr22221 2 180385599 to 180385617 18 + TSS region transcription start site region 22221
Mir1a-1hg 2 180385604 to 180401802 16198 + lncRNA gene Mir1a-1 and Mir133a-2 host gene
Cpgi12894 2 180386015 to 180386546 531 CpG island CpG island 12894
Tssr28102 2 180386753 to 180386763 10 - TSS region transcription start site region 28102
Tssr28103 2 180386793 to 180386797 4 - TSS region transcription start site region 28103
Tssr22222 2 180388062 to 180388065 3 + TSS region transcription start site region 22222
Mir1a-1 2 180389048 to 180389124 76 + miRNA gene microRNA 1a-1
Tssr22223 2 180389119 to 180389122 3 + TSS region transcription start site region 22223
Tssr22224 2 180392034 to 180392037 3 + TSS region transcription start site region 22224
Tssr22225 2 180394300 to 180394309 9 + TSS region transcription start site region 22225
Tssr22226 2 180394318 to 180394329 11 + TSS region transcription start site region 22226
Tssr22227 2 180394355 to 180394372 17 + TSS region transcription start site region 22227
Tssr22228 2 180394379 to 180394398 19 + TSS region transcription start site region 22228
Tssr22229 2 180394422 to 180394448 26 + TSS region transcription start site region 22229
Tssr22230 2 180394466 to 180394496 30 + TSS region transcription start site region 22230
Tssr22231 2 180394518 to 180394536 18 + TSS region transcription start site region 22231
Tssr22232 2 180396901 to 180396912 11 + TSS region transcription start site region 22232
Tssr22233 2 180397308 to 180397333 25 + TSS region transcription start site region 22233
Tssr22234 2 180397341 to 180397355 14 + TSS region transcription start site region 22234
Mir133a-2 2 180398379 to 180398482 103 + miRNA gene microRNA 133a-2
Tssr22235 2 180398456 to 180398462 6 + TSS region transcription start site region 22235
D2Mit230 2 180418266 to 180418403 137 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 230
Tssr28104 2 180429784 to 180429828 44 - TSS region transcription start site region 28104
Tssr28105 2 180439484 to 180439485 1 - TSS region transcription start site region 28105
Tssr28106 2 180439486 to 180439521 35 - TSS region transcription start site region 28106
Tssr28107 2 180439522 to 180439528 6 - TSS region transcription start site region 28107
Tssr28108 2 180439553 to 180439560 7 - TSS region transcription start site region 28108
Tssr28109 2 180439869 to 180439904 35 - TSS region transcription start site region 28109
Tssr22236 2 180440031 to 180440050 19 + TSS region transcription start site region 22236
Tssr22237 2 180442266 to 180442277 11 + TSS region transcription start site region 22237
Tssr22238 2 180443043 to 180443064 21 + TSS region transcription start site region 22238
Tssr28110 2 180443815 to 180443834 19 - TSS region transcription start site region 28110
Tssr28111 2 180443886 to 180443933 47 - TSS region transcription start site region 28111
Tssr22239 2 180444041 to 180444053 12 + TSS region transcription start site region 22239
Tssr22240 2 180454929 to 180454934 5 + TSS region transcription start site region 22240
Cpgi12895 2 180455816 to 180457177 1361 CpG island CpG island 12895
Tssr28112 2 180456094 to 180456105 11 - TSS region transcription start site region 28112
Tssr22241 2 180456234 to 180456246 12 + TSS region transcription start site region 22241
Slco4a1 2 180456250 to 180474853 18603 + protein coding gene solute carrier organic anion transporter family, member 4a1
Tssr22242 2 180456299 to 180456302 3 + TSS region transcription start site region 22242
Tssr22243 2 180456307 to 180456341 34 + TSS region transcription start site region 22243
Tssr22244 2 180460988 to 180460997 9 + TSS region transcription start site region 22244
Tssr22245 2 180461032 to 180461041 9 + TSS region transcription start site region 22245
Tssr22246 2 180464041 to 180464065 24 + TSS region transcription start site region 22246
Cpgi12896 2 180482469 to 180482635 166 CpG island CpG island 12896
D2Frk2 2 180487975 to 180488149 174 DNA segment DNA segment, Chr 2, Frankel 2
Cpgi12897 2 180499542 to 180500694 1152 CpG island CpG island 12897
Tssr22247 2 180499893 to 180499919 26 + TSS region transcription start site region 22247
Ntsr1 2 180499976 to 180544979 45003 + protein coding gene neurotensin receptor 1
Tssr805 2 180510283 to 180510284 1 + TSS region transcription start site region 805
Tssr28113 2 180541418 to 180541423 5 - TSS region transcription start site region 28113
Gm30144 2 180545080 to 180581121 36041 - lncRNA gene predicted gene, 30144
Tssr22248 2 180581199 to 180581219 20 + TSS region transcription start site region 22248
Tssr22249 2 180581220 to 180581243 23 + TSS region transcription start site region 22249
Mrgbp 2 180581304 to 180586304 5000 + protein coding gene MRG/MORF4L binding protein
Cpgi12898 2 180582459 to 180583515 1056 CpG island CpG island 12898
Tssr22250 2 180582726 to 180582742 16 + TSS region transcription start site region 22250
Tssr22251 2 180582750 to 180582777 27 + TSS region transcription start site region 22251
Tssr22252 2 180582780 to 180582798 18 + TSS region transcription start site region 22252
Cpgi12899 2 180589019 to 180590029 1010 CpG island CpG island 12899
Tssr28114 2 180589346 to 180589397 51 - TSS region transcription start site region 28114
Ogfr 2 180589375 to 180595837 6462 + protein coding gene opioid growth factor receptor
Tssr22253 2 180589423 to 180589479 56 + TSS region transcription start site region 22253
Tssr806 2 180589766 to 180589787 21 + TSS region transcription start site region 806