Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:177944949-180884958

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349 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bhr1 2 142751556 to 178800659 36049103 QTL bronchial hyperresponsiveness 1
Nidd2k 2 158236417 to 178800659 20564242 QTL Nidd2 on KK-A
Tailq4 2 162895006 to 178800659 15905653 QTL tail length QTL 4
Epfq2 2 162895006 to 178800659 15905653 QTL epididymal fat pad weight QTL 2
Pwbwq3 2 169952882 to 179278998 9326116 QTL pre-weaning body weight QTL 3
Sls 2 174547204 to 178800659 4253455 heritable phenotypic marker semidominant lethal spotting
Gm14326 2 177935993 to 177957297 21304 - protein coding gene predicted gene 14326
Tssr28054 2 177957285 to 177957312 27 - TSS region transcription start site region 28054
Gm14428 2 177980534 to 177982700 2166 - pseudogene predicted gene 14428
Gm40030 2 178002755 to 178018928 16173 + lncRNA gene predicted gene, 40030
Tssr22165 2 178023274 to 178023291 17 + TSS region transcription start site region 22165
Zfp971 2 178023284 to 178034022 10738 + protein coding gene zinc finger protein 971
Gm26869 2 178023808 to 178028736 4928 - lincRNA gene predicted gene, 26869
Gm46791 2 178050379 to 178059031 8652 - lncRNA gene predicted gene, 46791
Zfp931 2 178067695 to 178078476 10781 - protein coding gene zinc finger protein 931
Gm35319 2 178078560 to 178114013 35453 + lncRNA gene predicted gene, 35319
Cpgi12870 2 178118907 to 178119604 697 CpG island CpG island 12870
Phactr3 2 178118975 to 178338492 219517 + protein coding gene phosphatase and actin regulator 3
Tssr22166 2 178119112 to 178119158 46 + TSS region transcription start site region 22166
Tssr22167 2 178119166 to 178119183 17 + TSS region transcription start site region 22167
Tssr22168 2 178141876 to 178141887 11 + TSS region transcription start site region 22168
Tssr22169 2 178141893 to 178141916 23 + TSS region transcription start site region 22169
Tssr22170 2 178141920 to 178141939 19 + TSS region transcription start site region 22170
Tssr795 2 178142204 to 178142217 13 + TSS region transcription start site region 795
Cpgi12871 2 178142292 to 178142719 427 CpG island CpG island 12871
Cpgi12872 2 178175370 to 178175587 217 CpG island CpG island 12872
Tssr22171 2 178193075 to 178193099 24 + TSS region transcription start site region 22171
Tssr22172 2 178193102 to 178193118 16 + TSS region transcription start site region 22172
Tssr22173 2 178295338 to 178295343 5 + TSS region transcription start site region 22173
Cpgi12873 2 178327425 to 178327608 183 CpG island CpG island 12873
Tssr22174 2 178327511 to 178327534 23 + TSS region transcription start site region 22174
Tssr22175 2 178327542 to 178327567 25 + TSS region transcription start site region 22175
Tssr22176 2 178327602 to 178327613 11 + TSS region transcription start site region 22176
Tssr22177 2 178327663 to 178327683 20 + TSS region transcription start site region 22177
Sycp2 2 178345293 to 178407685 62392 - protein coding gene synaptonemal complex protein 2
Gm18662 2 178361039 to 178362115 1076 - pseudogene predicted gene, 18662
Tssr28055 2 178364873 to 178364898 25 - TSS region transcription start site region 28055
Tssr28056 2 178369372 to 178369382 10 - TSS region transcription start site region 28056
D2Mit73 2 178401000 to 178401247 247 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 73
4930421P05Rik 2 178404157 to 178409291 5134 unclassified gene RIKEN cDNA 4930421P05 gene
Cpgi12874 2 178407132 to 178407797 665 CpG island CpG island 12874
Tssr28057 2 178407449 to 178407470 21 - TSS region transcription start site region 28057
Tssr28058 2 178407481 to 178407498 17 - TSS region transcription start site region 28058
Tssr28059 2 178407583 to 178407598 15 - TSS region transcription start site region 28059
Ppp1r3d 2 178411206 to 178414463 3257 - protein coding gene protein phosphatase 1, regulatory subunit 3D
Cpgi12875 2 178413225 to 178415213 1988 CpG island CpG island 12875
Tssr28060 2 178414405 to 178414446 41 - TSS region transcription start site region 28060
Tssr28061 2 178414460 to 178414507 47 - TSS region transcription start site region 28061
Tssr22178 2 178414512 to 178414591 79 + TSS region transcription start site region 22178
Fam217b 2 178414534 to 178422181 7647 + protein coding gene family with sequence similarity 217, member B
Tssr796 2 178414904 to 178414945 41 - TSS region transcription start site region 796
Tssr28062 2 178416604 to 178416607 3 - TSS region transcription start site region 28062
Tssr797 2 178416617 to 178416622 5 - TSS region transcription start site region 797
Tssr28063 2 178416629 to 178416639 10 - TSS region transcription start site region 28063
1700093E11Rik 2 178417477 to 178418241 764 unclassified gene RIKEN cDNA 1700093E11 gene
Gm35532 2 178427715 to 178429642 1927 - lncRNA gene predicted gene, 35532
Cdh26 2 178430531 to 178487366 56835 + protein coding gene cadherin-like 26
Tssr22179 2 178455400 to 178455417 17 + TSS region transcription start site region 22179
Tssr22180 2 178455431 to 178455446 15 + TSS region transcription start site region 22180
Tssr22181 2 178455466 to 178455473 7 + TSS region transcription start site region 22181
Tssr798 2 178455537 to 178455543 6 + TSS region transcription start site region 798
D2Mit504 2 178489659 to 178489856 197 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 504
Tssr22182 2 178494342 to 178494382 40 + TSS region transcription start site region 22182
Gm35582 2 178497211 to 178502082 4871 - lncRNA gene predicted gene, 35582
Tssr22183 2 178502141 to 178502161 20 + TSS region transcription start site region 22183
Tssr28064 2 178506060 to 178506069 9 - TSS region transcription start site region 28064
Tssr28065 2 178506111 to 178506127 16 - TSS region transcription start site region 28065
Tssr799 2 178506161 to 178506168 7 - TSS region transcription start site region 799
Cpgi12876 2 178506199 to 178506430 231 CpG island CpG island 12876
D2Mit506 2 178510286 to 178510431 145 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 506
Tssr28066 2 178546410 to 178546451 41 - TSS region transcription start site region 28066
Tssr28067 2 178594358 to 178594366 8 - TSS region transcription start site region 28067
Tssr28068 2 178627793 to 178627800 7 - TSS region transcription start site region 28068
Tssr28069 2 178627807 to 178627825 18 - TSS region transcription start site region 28069
Gm40031 2 178634741 to 178640020 5279 + lncRNA gene predicted gene, 40031
Tssr28070 2 178635825 to 178635830 5 - TSS region transcription start site region 28070
Gm35695 2 178659345 to 178665836 6491 + lncRNA gene predicted gene, 35695
Tssr22184 2 178659347 to 178659366 19 + TSS region transcription start site region 22184
Gm35815 2 178680638 to 178687214 6576 + lncRNA gene predicted gene, 35815
D2Mit148 2 178800545 to 178800659 114 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 148
nmf88 2 178800545 to 181111429 2310884 heritable phenotypic marker neuroscience mutagenesis facility, 88
Vacq1 2 178800545 to 181873487 3072942 QTL voluntary alcohol consumption QTL 1
D2Dcr138 2 178837264 to 178837361 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 138
Gm35888 2 178850578 to 178850968 390 + lncRNA gene predicted gene, 35888
Tssr22185 2 178850618 to 178850637 19 + TSS region transcription start site region 22185
Tssr22186 2 178964208 to 178964210 2 + TSS region transcription start site region 22186
Gm14314 2 179020119 to 179021133 1014 - pseudogene predicted gene 14314
D2Mit346 2 179031854 to 179031952 98 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 346
Gm35948 2 179039987 to 179048939 8952 + lncRNA gene predicted gene, 35948
D2Mit114 2 179106233 to 179106355 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 114
Rbcwd2 2 179144673 to 179144673 0 QTL red blood cell width distribution 2
Gm14292 2 179177425 to 179177880 455 + pseudogene predicted gene 14292
Gm14293 2 179240490 to 179241066 576 + pseudogene predicted gene 14293
Gm14294 2 179364293 to 179365043 750 + pseudogene predicted gene 14294
Tssr22187 2 179414927 to 179414945 18 + TSS region transcription start site region 22187
4930591A17Rik 2 179414936 to 179416880 1944 + lincRNA gene RIKEN cDNA 4930591A17 gene
Tssr22188 2 179414949 to 179414958 9 + TSS region transcription start site region 22188
Gm36004 2 179431203 to 179435301 4098 - lncRNA gene predicted gene, 36004
Cpgi12877 2 179441745 to 179444112 2367 CpG island CpG island 12877
Tssr22189 2 179442407 to 179442421 14 + TSS region transcription start site region 22189
Tssr22190 2 179442427 to 179442442 15 + TSS region transcription start site region 22190
Cdh4 2 179442431 to 179899373 456942 + protein coding gene cadherin 4
Cpgi12878 2 179537448 to 179537692 244 CpG island CpG island 12878
Tssr22191 2 179560863 to 179560894 31 + TSS region transcription start site region 22191
Cpgi12879 2 179565811 to 179566091 280 CpG island CpG island 12879
Gm14300 2 179612622 to 179613567 945 - pseudogene predicted gene 14300
4930449I21Rik 2 179650732 to 179651621 889 unclassified gene RIKEN cDNA 4930449I21 gene
D2Mit1002 2 179653841 to 179653971 130 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1002
D2Mit1001 2 179653988 to 179654072 84 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1001
D2Mit200 2 179791700 to 179791834 134 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 200
Sluc17 2 179791700 to 179791834 134 QTL susceptibility to lung cancer 17
Gm36066 2 179794861 to 179805785 10924 - lncRNA gene predicted gene, 36066
Tssr28071 2 179806687 to 179806696 9 - TSS region transcription start site region 28071
Taf4 2 179912152 to 179976646 64494 - protein coding gene TATA-box binding protein associated factor 4
Tssr28072 2 179963873 to 179963884 11 - TSS region transcription start site region 28072
Cpgi12880 2 179974732 to 179977517 2785 CpG island CpG island 12880
Tssr28073 2 179976646 to 179976665 19 - TSS region transcription start site region 28073
Tssr28074 2 179976669 to 179976728 59 - TSS region transcription start site region 28074
Tssr22192 2 179976820 to 179976841 21 + TSS region transcription start site region 22192
4921531C22Rik 2 179976853 to 179979013 2160 + lncRNA gene RIKEN cDNA 4921531C22 gene
Tssr22193 2 179976872 to 179976889 17 + TSS region transcription start site region 22193
Tssr22194 2 179976894 to 179976906 12 + TSS region transcription start site region 22194
Tssr22195 2 179977441 to 179977445 4 + TSS region transcription start site region 22195
Gm14299 2 179993188 to 179993584 396 + pseudogene predicted gene 14299
Cpgi12881 2 180024239 to 180026183 1944 CpG island CpG island 12881
Tssr22196 2 180024903 to 180024914 11 + TSS region transcription start site region 22196
Tssr22197 2 180024951 to 180025007 56 + TSS region transcription start site region 22197
Lsm14b 2 180024987 to 180035465 10478 + protein coding gene LSM family member 14B
Tssr800 2 180025256 to 180025268 12 + TSS region transcription start site region 800
Tssr22198 2 180034610 to 180034617 7 + TSS region transcription start site region 22198
Tssr22199 2 180034816 to 180034850 34 + TSS region transcription start site region 22199
Tssr22200 2 180035081 to 180035085 4 + TSS region transcription start site region 22200
Psma7 2 180036374 to 180042433 6059 - protein coding gene proteasome (prosome, macropain) subunit, alpha type 7
Cpgi12882 2 180041647 to 180043528 1881 CpG island CpG island 12882
Tssr22201 2 180041711 to 180041738 27 + TSS region transcription start site region 22201
Tssr28075 2 180042371 to 180042398 27 - TSS region transcription start site region 28075
Tssr28076 2 180042401 to 180042438 37 - TSS region transcription start site region 28076
Tssr22202 2 180042496 to 180042562 66 + TSS region transcription start site region 22202
Ss18l1 2 180042509 to 180070201 27692 + protein coding gene SS18, nBAF chromatin remodeling complex subunit like 1
Tssr22203 2 180042698 to 180042707 9 + TSS region transcription start site region 22203
Tssr22204 2 180042715 to 180042727 12 + TSS region transcription start site region 22204
Tssr22205 2 180042728 to 180042739 11 + TSS region transcription start site region 22205
Tssr22206 2 180042743 to 180042791 48 + TSS region transcription start site region 22206
Cpgi12883 2 180070324 to 180071231 907 CpG island CpG island 12883
Tssr22207 2 180070576 to 180070611 35 + TSS region transcription start site region 22207
Mtg2 2 180070593 to 180085902 15309 + protein coding gene mitochondrial ribosome associated GTPase 2
Hrh3 2 180099465 to 180104407 4942 - protein coding gene histamine receptor H3
Tssr22208 2 180099838 to 180099847 9 + TSS region transcription start site region 22208
Gm17180 2 180099913 to 180101502 1589 + antisense lncRNA gene predicted gene 17180
Cpgi12884 2 180100559 to 180100890 331 CpG island CpG island 12884
Cpgi12885 2 180103069 to 180105244 2175 CpG island CpG island 12885
Tssr801 2 180104400 to 180104426 26 - TSS region transcription start site region 801
Tssr28077 2 180104443 to 180104454 11 - TSS region transcription start site region 28077
Tssr28078 2 180104463 to 180104478 15 - TSS region transcription start site region 28078
Gm46782 2 180104738 to 180110751 6013 - lncRNA gene predicted gene, 46782
Cpgi12886 2 180118828 to 180120172 1344 CpG island CpG island 12886
Tssr22209 2 180119301 to 180119407 106 + TSS region transcription start site region 22209
Osbpl2 2 180119366 to 180162682 43316 + protein coding gene oxysterol binding protein-like 2
Tssr22210 2 180120643 to 180120648 5 + TSS region transcription start site region 22210
Gm29886 2 180149659 to 180171871 22212 - lncRNA gene predicted gene, 29886
Tssr22211 2 180170355 to 180170403 48 + TSS region transcription start site region 22211
Cpgi12887 2 180170856 to 180172498 1642 CpG island CpG island 12887
Adrm1 2 180171490 to 180176284 4794 + protein coding gene adhesion regulating molecule 1
Tssr22212 2 180171562 to 180171573 11 + TSS region transcription start site region 22212
Tssr802 2 180171574 to 180171581 7 + TSS region transcription start site region 802
Tssr22213 2 180171589 to 180171658 69 + TSS region transcription start site region 22213
Tssr22214 2 180171949 to 180171962 13 + TSS region transcription start site region 22214
Lama5 2 180176373 to 180225859 49486 - protein coding gene laminin, alpha 5
Mir7005 2 180179755 to 180179823 68 - miRNA gene microRNA 7005
Tssr28079 2 180203707 to 180203725 18 - TSS region transcription start site region 28079
Tssr28080 2 180207783 to 180207794 11 - TSS region transcription start site region 28080
D2Wsu85e 2 180220870 to 180221119 249 DNA segment DNA segment, Chr 2, Wayne State University 85, expressed
Cpgi12888 2 180224861 to 180226227 1366 CpG island CpG island 12888
Tssr28081 2 180225812 to 180225872 60 - TSS region transcription start site region 28081
Tssr28082 2 180225908 to 180225919 11 - TSS region transcription start site region 28082
Tssr28083 2 180227701 to 180227737 36 - TSS region transcription start site region 28083
Tssr28084 2 180234983 to 180234998 15 - TSS region transcription start site region 28084
Tssr22215 2 180235136 to 180235150 14 + TSS region transcription start site region 22215
Tssr28085 2 180236610 to 180236620 10 - TSS region transcription start site region 28085
Cpgi12889 2 180256601 to 180257947 1346 CpG island CpG island 12889
Tssr28086 2 180257105 to 180257118 13 - TSS region transcription start site region 28086
Tssr28087 2 180257119 to 180257162 43 - TSS region transcription start site region 28087
Tssr22216 2 180257373 to 180257396 23 + TSS region transcription start site region 22216
Rps21 2 180257377 to 180258445 1068 + protein coding gene ribosomal protein S21
Tssr22217 2 180257405 to 180257428 23 + TSS region transcription start site region 22217
Mir3091 2 180257536 to 180257611 75 + miRNA gene microRNA 3091
Cables2 2 180258539 to 180273490 14951 - protein coding gene CDK5 and Abl enzyme substrate 2
Tssr28088 2 180262580 to 180262595 15 - TSS region transcription start site region 28088
Cpgi12890 2 180272647 to 180274247 1600 CpG island CpG island 12890
Tssr28089 2 180273374 to 180273414 40 - TSS region transcription start site region 28089
Tssr28090 2 180273443 to 180273478 35 - TSS region transcription start site region 28090
Tssr28091 2 180273488 to 180273502 14 - TSS region transcription start site region 28091
Tssr28092 2 180276852 to 180276872 20 - TSS region transcription start site region 28092
Rbbp8nl 2 180277646 to 180289879 12233 - protein coding gene RBBP8 N-terminal like
Gm29943 2 180290695 to 180312765 22070 + lncRNA gene predicted gene, 29943
Tssr22218 2 180290713 to 180290731 18 + TSS region transcription start site region 22218
Tssr22219 2 180290737 to 180290750 13 + TSS region transcription start site region 22219
Gata5 2 180325133 to 180334699 9566 - protein coding gene GATA binding protein 5
Tssr22220 2 180332390 to 180332402 12 + TSS region transcription start site region 22220
Gata5os 2 180332857 to 180340732 7875 + antisense lncRNA gene GATA binding protein 5, opposite strand