Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:173969312-174599326

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175 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bglu1 2 118112449 to 174483070 56370621 QTL blood glucose level 1
Scgq3 2 151867353 to 174547331 22679978 QTL spontaneous crescentic glomerulonephritis QTL 3
Atp5k-ps2 2 173984482 to 173984691 209 - pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 2
Cpgi12850 2 174015276 to 174015547 271 CpG island CpG island 12850
Gm30143 2 174019231 to 174021928 2697 + lncRNA gene predicted gene, 30143
Tssr22076 2 174019255 to 174019270 15 + TSS region transcription start site region 22076
Vamp7-ps 2 174046619 to 174047273 654 - pseudogene vesicle-associated membrane protein 7, pseudogene
Tssr28002 2 174047350 to 174047381 31 - TSS region transcription start site region 28002
Cpgi12851 2 174075009 to 174075304 295 CpG island CpG island 12851
Cpgi12852 2 174076147 to 174077243 1096 CpG island CpG island 12852
Tssr22077 2 174076296 to 174076356 60 + TSS region transcription start site region 22077
Stx16 2 174076308 to 174099771 23463 + protein coding gene syntaxin 16
Tssr22078 2 174077045 to 174077059 14 + TSS region transcription start site region 22078
D130084N16Rik 2 174077472 to 174079431 1959 unclassified gene RIKEN cDNA D130084N16 gene
Tssr22079 2 174097703 to 174097718 15 + TSS region transcription start site region 22079
Cpgi12853 2 174109887 to 174111258 1371 CpG island CpG island 12853
Npepl1 2 174110338 to 174122702 12364 + protein coding gene aminopeptidase-like 1
Tssr22080 2 174110340 to 174110394 54 + TSS region transcription start site region 22080
Tssr22081 2 174111050 to 174111073 23 + TSS region transcription start site region 22081
Tssr22082 2 174111093 to 174111102 9 + TSS region transcription start site region 22082
Tssr22083 2 174111109 to 174111135 26 + TSS region transcription start site region 22083
Tssr22084 2 174111142 to 174111156 14 + TSS region transcription start site region 22084
Tssr22085 2 174111199 to 174111208 9 + TSS region transcription start site region 22085
Tssr788 2 174115974 to 174115980 6 + TSS region transcription start site region 788
Cpgi12854 2 174120615 to 174121226 611 CpG island CpG island 12854
Tssr22086 2 174120848 to 174120860 12 + TSS region transcription start site region 22086
Gm10714 2 174125038 to 174183918 58880 - antisense lncRNA gene predicted gene 10714
D2Ucl1 2 174152094 to 174152299 205 DNA segment DNA segment, Chr 2, Univeristy College London 1
D2Mit199 2 174160091 to 174160398 307 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 199
Tssr28003 2 174169703 to 174169708 5 - TSS region transcription start site region 28003
D2Mit505 2 174222170 to 174222294 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 505
Gm27591 2 174247928 to 174247995 67 + miRNA gene predicted gene, 27591
Mirc28 2 174267047 to 174267585 538 complex/cluster/region microRNA cluster 28, including Mir296 through Mir298
Mir296 2 174267047 to 174267125 78 - miRNA gene microRNA 296
Tssr28004 2 174267053 to 174267057 4 - TSS region transcription start site region 28004
Mir298 2 174267504 to 174267585 81 - miRNA gene microRNA 298
Tssr28005 2 174276004 to 174276008 4 - TSS region transcription start site region 28005
D2Ertd173e 2 174277283 to 174277513 230 DNA segment DNA segment, Chr 2, ERATO Doi 173, expressed
Nespas 2 174281237 to 174295436 14199 - antisense lncRNA gene neuroendocrine secretory protein antisense
Cpgi12855 2 174284093 to 174286598 2505 CpG island CpG island 12855
Tssr789 2 174284228 to 174284237 9 + TSS region transcription start site region 789
Tssr790 2 174284268 to 174284293 25 + TSS region transcription start site region 790
Tssr22087 2 174284312 to 174284326 14 + TSS region transcription start site region 22087
Gnas 2 174284320 to 174346744 62424 + protein coding gene GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
Tssr22088 2 174284610 to 174284625 15 + TSS region transcription start site region 22088
Tssr28006 2 174285164 to 174285184 20 - TSS region transcription start site region 28006
Tssr22089 2 174285273 to 174285284 11 + TSS region transcription start site region 22089
Tssr22090 2 174285297 to 174285319 22 + TSS region transcription start site region 22090
Tssr22091 2 174285352 to 174285364 12 + TSS region transcription start site region 22091
Tssr28007 2 174286158 to 174286165 7 - TSS region transcription start site region 28007
Gm27899 2 174286608 to 174286671 63 + unclassified non-coding RNA gene predicted gene, 27899
Tssr22092 2 174289476 to 174289498 22 + TSS region transcription start site region 22092
Tssr22093 2 174289501 to 174289516 15 + TSS region transcription start site region 22093
Tssr22094 2 174289524 to 174289535 11 + TSS region transcription start site region 22094
Tssr22095 2 174289544 to 174289582 38 + TSS region transcription start site region 22095
Tssr22096 2 174289619 to 174289638 19 + TSS region transcription start site region 22096
Tssr22097 2 174289643 to 174289677 34 + TSS region transcription start site region 22097
Tssr22098 2 174289678 to 174289687 9 + TSS region transcription start site region 22098
Tssr22099 2 174289784 to 174289856 72 + TSS region transcription start site region 22099
Tssr22100 2 174289876 to 174289899 23 + TSS region transcription start site region 22100
Tssr22101 2 174289915 to 174290021 106 + TSS region transcription start site region 22101
Tssr28008 2 174294158 to 174294161 3 - TSS region transcription start site region 28008
Tssr22102 2 174294752 to 174294770 18 + TSS region transcription start site region 22102
Gm27869 2 174295071 to 174295192 121 + unclassified non-coding RNA gene predicted gene, 27869
Cpgi12856 2 174295197 to 174296545 1348 CpG island CpG island 12856
Gm27849 2 174295337 to 174295461 124 + unclassified non-coding RNA gene predicted gene, 27849
Tssr28009 2 174295401 to 174295442 41 - TSS region transcription start site region 28009
Tssr22103 2 174295612 to 174295631 19 + TSS region transcription start site region 22103
Cpgi12857 2 174296939 to 174297402 463 CpG island CpG island 12857
Tssr22104 2 174297327 to 174297353 26 + TSS region transcription start site region 22104
Cpgi12858 2 174298234 to 174301029 2795 CpG island CpG island 12858
Tssr22105 2 174298729 to 174298741 12 + TSS region transcription start site region 22105
Tssr22106 2 174298921 to 174298938 17 + TSS region transcription start site region 22106
Tssr22107 2 174302262 to 174302267 5 + TSS region transcription start site region 22107
Tssr22108 2 174304109 to 174304112 3 + TSS region transcription start site region 22108
Tssr22109 2 174304321 to 174304327 6 + TSS region transcription start site region 22109
Tssr22110 2 174304334 to 174304348 14 + TSS region transcription start site region 22110
Tssr22111 2 174304357 to 174304360 3 + TSS region transcription start site region 22111
Tssr22112 2 174304361 to 174304372 11 + TSS region transcription start site region 22112
Tssr22113 2 174304554 to 174304561 7 + TSS region transcription start site region 22113
Tssr22114 2 174304562 to 174304571 9 + TSS region transcription start site region 22114
Tssr22115 2 174304575 to 174304576 1 + TSS region transcription start site region 22115
Tssr22116 2 174304601 to 174304606 5 + TSS region transcription start site region 22116
Tssr22117 2 174304727 to 174304730 3 + TSS region transcription start site region 22117
Tssr22118 2 174304755 to 174304758 3 + TSS region transcription start site region 22118
Tssr22119 2 174308313 to 174308335 22 + TSS region transcription start site region 22119
Tssr22120 2 174308445 to 174308522 77 + TSS region transcription start site region 22120
Tssr22121 2 174310016 to 174310020 4 + TSS region transcription start site region 22121
Gm30189 2 174320908 to 174327388 6480 - lncRNA gene predicted gene, 30189
Cpgi12859 2 174327125 to 174328080 955 CpG island CpG island 12859
Tssr28010 2 174327348 to 174327362 14 - TSS region transcription start site region 28010
Tssr28011 2 174327372 to 174327419 47 - TSS region transcription start site region 28011
Tssr22122 2 174327558 to 174327575 17 + TSS region transcription start site region 22122
Tssr22123 2 174327726 to 174327729 3 + TSS region transcription start site region 22123
Tssr22124 2 174327747 to 174327763 16 + TSS region transcription start site region 22124
Tssr22125 2 174328200 to 174328211 11 + TSS region transcription start site region 22125
Cpgi12860 2 174328350 to 174331182 2832 CpG island CpG island 12860
Tssr22126 2 174329362 to 174329411 49 + TSS region transcription start site region 22126
Tssr22127 2 174329983 to 174329994 11 + TSS region transcription start site region 22127
Tssr22128 2 174330012 to 174330047 35 + TSS region transcription start site region 22128
Tssr22129 2 174330048 to 174330059 11 + TSS region transcription start site region 22129
Tssr22130 2 174330067 to 174330098 31 + TSS region transcription start site region 22130
Tssr22131 2 174330111 to 174330126 15 + TSS region transcription start site region 22131
Tssr22132 2 174330186 to 174330197 11 + TSS region transcription start site region 22132
Gm20721 2 174330319 to 174346712 16393 - protein coding gene predicted gene, 20721
Tssr22133 2 174336741 to 174336764 23 + TSS region transcription start site region 22133
Tssr791 2 174339330 to 174339354 24 + TSS region transcription start site region 791
Tssr28012 2 174341678 to 174341705 27 - TSS region transcription start site region 28012
Tssr22134 2 174341811 to 174341868 57 + TSS region transcription start site region 22134
Tssr22135 2 174343227 to 174343265 38 + TSS region transcription start site region 22135
Tssr22136 2 174344379 to 174344403 24 + TSS region transcription start site region 22136
Tssr28013 2 174345113 to 174345129 16 - TSS region transcription start site region 28013
Tssr22137 2 174345392 to 174345451 59 + TSS region transcription start site region 22137
Tssr28014 2 174345476 to 174345540 64 - TSS region transcription start site region 28014
Tssr22138 2 174345488 to 174345516 28 + TSS region transcription start site region 22138
Tssr22139 2 174346000 to 174346033 33 + TSS region transcription start site region 22139
Tssr22140 2 174346254 to 174346314 60 + TSS region transcription start site region 22140
Tssr22141 2 174346317 to 174346333 16 + TSS region transcription start site region 22141
Tssr792 2 174346334 to 174346350 16 + TSS region transcription start site region 792
Tssr22142 2 174346357 to 174346370 13 + TSS region transcription start site region 22142
Tssr22143 2 174346452 to 174346515 63 + TSS region transcription start site region 22143
Tssr22144 2 174346567 to 174346580 13 + TSS region transcription start site region 22144
Tssr22145 2 174346596 to 174346601 5 + TSS region transcription start site region 22145
Tssr22146 2 174346602 to 174346638 36 + TSS region transcription start site region 22146
Cpgi12861 2 174415596 to 174416193 597 CpG island CpG island 12861
Nelfcd 2 174415804 to 174427502 11698 + protein coding gene negative elongation factor complex member C/D, Th1l
Tssr22147 2 174415815 to 174415871 56 + TSS region transcription start site region 22147
Tssr22148 2 174426290 to 174426295 5 + TSS region transcription start site region 22148
Tssr22149 2 174427492 to 174427497 5 + TSS region transcription start site region 22149
Ctsz 2 174427494 to 174439039 11545 - protein coding gene cathepsin Z
Tssr28015 2 174427816 to 174427834 18 - TSS region transcription start site region 28015
Tssr28016 2 174427878 to 174427890 12 - TSS region transcription start site region 28016
Tssr28017 2 174427955 to 174427984 29 - TSS region transcription start site region 28017
Tssr28018 2 174428626 to 174428643 17 - TSS region transcription start site region 28018
Tssr28019 2 174428660 to 174428682 22 - TSS region transcription start site region 28019
Tssr28020 2 174428692 to 174428705 13 - TSS region transcription start site region 28020
Tssr28021 2 174428730 to 174428743 13 - TSS region transcription start site region 28021
Tssr28022 2 174429075 to 174429132 57 - TSS region transcription start site region 28022
Tssr28023 2 174432429 to 174432441 12 - TSS region transcription start site region 28023
Tssr28024 2 174433548 to 174433572 24 - TSS region transcription start site region 28024
Tssr28025 2 174433627 to 174433652 25 - TSS region transcription start site region 28025
Tssr28026 2 174437774 to 174437776 2 - TSS region transcription start site region 28026
Tssr22150 2 174438201 to 174438262 61 + TSS region transcription start site region 22150
Tssr28027 2 174438307 to 174438339 32 - TSS region transcription start site region 28027
Cpgi12862 2 174438663 to 174439303 640 CpG island CpG island 12862
Tssr28028 2 174438897 to 174438938 41 - TSS region transcription start site region 28028
Tssr28029 2 174438940 to 174438959 19 - TSS region transcription start site region 28029
Tssr28030 2 174438961 to 174438995 34 - TSS region transcription start site region 28030
Tssr28031 2 174438996 to 174439029 33 - TSS region transcription start site region 28031
Tssr22151 2 174439074 to 174439126 52 + TSS region transcription start site region 22151
Tssr22152 2 174439706 to 174439727 21 + TSS region transcription start site region 22152
Rpl30-ps5 2 174440929 to 174441289 360 - pseudogene ribosomal protein L30, pseudogene 5
Tssr28032 2 174441350 to 174441360 10 - TSS region transcription start site region 28032
Tssr22153 2 174442231 to 174442238 7 + TSS region transcription start site region 22153
Tssr22154 2 174450678 to 174450708 30 + TSS region transcription start site region 22154
Tubb1 2 174450695 to 174457882 7187 + protein coding gene tubulin, beta 1 class VI
Cpgi12863 2 174456876 to 174457544 668 CpG island CpG island 12863
Atp5e 2 174461075 to 174464101 3026 - protein coding gene ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
Cpgi12864 2 174463656 to 174464380 724 CpG island CpG island 12864
Tssr28033 2 174464039 to 174464050 11 - TSS region transcription start site region 28033
Tssr28034 2 174464063 to 174464099 36 - TSS region transcription start site region 28034
Prelid3b 2 174465076 to 174472991 7915 - protein coding gene PRELI domain containing 3B
Cpgi12865 2 174472318 to 174473472 1154 CpG island CpG island 12865
Tssr28035 2 174472878 to 174472936 58 - TSS region transcription start site region 28035
Tssr28036 2 174472949 to 174473019 70 - TSS region transcription start site region 28036
Gm38546 2 174473176 to 174474109 933 + lncRNA gene predicted gene, 38546
D2Mit265 2 174482966 to 174483070 104 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 265
Gm14385 2 174484701 to 174485576 875 - pseudogene predicted gene 14385
Cpgi12866 2 174502934 to 174503139 205 CpG island CpG island 12866
D2Mit213 2 174547204 to 174547331 127 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 213
Sls 2 174547204 to 178800659 4253455 heritable phenotypic marker semidominant lethal spotting
Gm40015 2 174581925 to 174593773 11848 - lncRNA gene predicted gene, 40015
Vmn1r-ps1 2 174591230 to 174591802 572 + pseudogene vomeronasal 1 receptor, pseudogene 1
Tssr22155 2 174598653 to 174598674 21 + TSS region transcription start site region 22155
Tssr22156 2 174598695 to 174598726 31 + TSS region transcription start site region 22156