Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:173699482-174269691

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab22a 2 173659765 to 173702186 42421 + protein coding gene RAB22A, member RAS oncogene family
Mir6340 2 173701030 to 173701148 118 - miRNA gene microRNA 6340
1700010B08Rik 2 173719415 to 173722086 2671 + protein coding gene RIKEN cDNA 1700010B08 gene
Tssr22066 2 173719426 to 173719437 11 + TSS region transcription start site region 22066
Tssr786 2 173719447 to 173719456 9 + TSS region transcription start site region 786
Tssr22067 2 173719467 to 173719502 35 + TSS region transcription start site region 22067
Cpgi12849 2 173737312 to 173738079 767 CpG island CpG island 12849
Tssr22068 2 173737478 to 173737490 12 + TSS region transcription start site region 22068
Tssr22069 2 173737492 to 173737503 11 + TSS region transcription start site region 22069
Tssr22070 2 173737555 to 173737601 46 + TSS region transcription start site region 22070
Vapb 2 173737571 to 173784336 46765 + protein coding gene vesicle-associated membrane protein, associated protein B and C
Tssr22071 2 173737602 to 173737632 30 + TSS region transcription start site region 22071
Tssr22072 2 173737639 to 173737646 7 + TSS region transcription start site region 22072
Gm18917 2 173749918 to 173750490 572 + pseudogene predicted gene, 18917
Tssr787 2 173768243 to 173768264 21 + TSS region transcription start site region 787
Tssr22073 2 173779213 to 173779226 13 + TSS region transcription start site region 22073
Tssr22074 2 173788354 to 173788360 6 + TSS region transcription start site region 22074
Gm14371 2 173793437 to 173847670 54233 - pseudogene predicted gene 14371
Tssr22075 2 173800052 to 173800054 2 + TSS region transcription start site region 22075
Gm30017 2 173874285 to 173885809 11524 + lncRNA gene predicted gene, 30017
Gm14336 2 173920352 to 173920826 474 - pseudogene predicted gene 14336
Atp5k-ps2 2 173984482 to 173984691 209 - pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 2
Cpgi12850 2 174015276 to 174015547 271 CpG island CpG island 12850
Gm30143 2 174019231 to 174021928 2697 + lncRNA gene predicted gene, 30143
Tssr22076 2 174019255 to 174019270 15 + TSS region transcription start site region 22076
Vamp7-ps 2 174046619 to 174047273 654 - pseudogene vesicle-associated membrane protein 7, pseudogene
Tssr28002 2 174047350 to 174047381 31 - TSS region transcription start site region 28002
Cpgi12851 2 174075009 to 174075304 295 CpG island CpG island 12851
Cpgi12852 2 174076147 to 174077243 1096 CpG island CpG island 12852
Tssr22077 2 174076296 to 174076356 60 + TSS region transcription start site region 22077
Stx16 2 174076308 to 174099771 23463 + protein coding gene syntaxin 16
Tssr22078 2 174077045 to 174077059 14 + TSS region transcription start site region 22078
D130084N16Rik 2 174077472 to 174079431 1959 unclassified gene RIKEN cDNA D130084N16 gene
Tssr22079 2 174097703 to 174097718 15 + TSS region transcription start site region 22079
Cpgi12853 2 174109887 to 174111258 1371 CpG island CpG island 12853
Npepl1 2 174110338 to 174122702 12364 + protein coding gene aminopeptidase-like 1
Tssr22080 2 174110340 to 174110394 54 + TSS region transcription start site region 22080
Tssr22081 2 174111050 to 174111073 23 + TSS region transcription start site region 22081
Tssr22082 2 174111093 to 174111102 9 + TSS region transcription start site region 22082
Tssr22083 2 174111109 to 174111135 26 + TSS region transcription start site region 22083
Tssr22084 2 174111142 to 174111156 14 + TSS region transcription start site region 22084
Tssr22085 2 174111199 to 174111208 9 + TSS region transcription start site region 22085
Tssr788 2 174115974 to 174115980 6 + TSS region transcription start site region 788
Cpgi12854 2 174120615 to 174121226 611 CpG island CpG island 12854
Tssr22086 2 174120848 to 174120860 12 + TSS region transcription start site region 22086
Gm10714 2 174125038 to 174183918 58880 - antisense lncRNA gene predicted gene 10714
D2Ucl1 2 174152094 to 174152299 205 DNA segment DNA segment, Chr 2, Univeristy College London 1
D2Mit199 2 174160091 to 174160398 307 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 199
Tssr28003 2 174169703 to 174169708 5 - TSS region transcription start site region 28003
D2Mit505 2 174222170 to 174222294 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 505
Gm27591 2 174247928 to 174247995 67 + miRNA gene predicted gene, 27591
Mir296 2 174267047 to 174267125 78 - miRNA gene microRNA 296
Mirc28 2 174267047 to 174267585 538 complex/cluster/region microRNA cluster 28, including Mir296 through Mir298
Tssr28004 2 174267053 to 174267057 4 - TSS region transcription start site region 28004
Mir298 2 174267504 to 174267585 81 - miRNA gene microRNA 298