Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:173644482-174324691

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp4r1l-ps 2 173579320 to 173659539 80219 - pseudogene protein phosphatase 4, regulatory subunit 1-like, pseudogene
Cpgi12848 2 173659171 to 173660426 1255 CpG island CpG island 12848
Tssr28000 2 173659522 to 173659552 30 - TSS region transcription start site region 28000
Tssr22060 2 173659595 to 173659616 21 + TSS region transcription start site region 22060
Tssr22061 2 173659625 to 173659654 29 + TSS region transcription start site region 22061
Tssr28001 2 173659667 to 173659677 10 - TSS region transcription start site region 28001
Rab22a 2 173659765 to 173702186 42421 + protein coding gene RAB22A, member RAS oncogene family
Tssr22062 2 173659807 to 173659816 9 + TSS region transcription start site region 22062
Tssr22063 2 173659834 to 173659871 37 + TSS region transcription start site region 22063
Tssr22064 2 173660067 to 173660082 15 + TSS region transcription start site region 22064
A530082H02Rik 2 173676451 to 173679657 3206 unclassified gene RIKEN cDNA A530082H02 gene
Tssr22065 2 173685632 to 173685634 2 + TSS region transcription start site region 22065
Mir6340 2 173701030 to 173701148 118 - miRNA gene microRNA 6340
1700010B08Rik 2 173719415 to 173722086 2671 + protein coding gene RIKEN cDNA 1700010B08 gene
Tssr22066 2 173719426 to 173719437 11 + TSS region transcription start site region 22066
Tssr786 2 173719447 to 173719456 9 + TSS region transcription start site region 786
Tssr22067 2 173719467 to 173719502 35 + TSS region transcription start site region 22067
Cpgi12849 2 173737312 to 173738079 767 CpG island CpG island 12849
Tssr22068 2 173737478 to 173737490 12 + TSS region transcription start site region 22068
Tssr22069 2 173737492 to 173737503 11 + TSS region transcription start site region 22069
Tssr22070 2 173737555 to 173737601 46 + TSS region transcription start site region 22070
Vapb 2 173737571 to 173784336 46765 + protein coding gene vesicle-associated membrane protein, associated protein B and C
Tssr22071 2 173737602 to 173737632 30 + TSS region transcription start site region 22071
Tssr22072 2 173737639 to 173737646 7 + TSS region transcription start site region 22072
Gm18917 2 173749918 to 173750490 572 + pseudogene predicted gene, 18917
Tssr787 2 173768243 to 173768264 21 + TSS region transcription start site region 787
Tssr22073 2 173779213 to 173779226 13 + TSS region transcription start site region 22073
Tssr22074 2 173788354 to 173788360 6 + TSS region transcription start site region 22074
Gm14371 2 173793437 to 173847670 54233 - pseudogene predicted gene 14371
Tssr22075 2 173800052 to 173800054 2 + TSS region transcription start site region 22075
Gm30017 2 173874285 to 173885809 11524 + lncRNA gene predicted gene, 30017
Gm14336 2 173920352 to 173920826 474 - pseudogene predicted gene 14336
Atp5k-ps2 2 173984482 to 173984691 209 - pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 2
Cpgi12850 2 174015276 to 174015547 271 CpG island CpG island 12850
Gm30143 2 174019231 to 174021928 2697 + lncRNA gene predicted gene, 30143
Tssr22076 2 174019255 to 174019270 15 + TSS region transcription start site region 22076
Vamp7-ps 2 174046619 to 174047273 654 - pseudogene vesicle-associated membrane protein 7, pseudogene
Tssr28002 2 174047350 to 174047381 31 - TSS region transcription start site region 28002
Cpgi12851 2 174075009 to 174075304 295 CpG island CpG island 12851
Cpgi12852 2 174076147 to 174077243 1096 CpG island CpG island 12852
Tssr22077 2 174076296 to 174076356 60 + TSS region transcription start site region 22077
Stx16 2 174076308 to 174099771 23463 + protein coding gene syntaxin 16
Tssr22078 2 174077045 to 174077059 14 + TSS region transcription start site region 22078
D130084N16Rik 2 174077472 to 174079431 1959 unclassified gene RIKEN cDNA D130084N16 gene
Tssr22079 2 174097703 to 174097718 15 + TSS region transcription start site region 22079
Cpgi12853 2 174109887 to 174111258 1371 CpG island CpG island 12853
Npepl1 2 174110338 to 174122702 12364 + protein coding gene aminopeptidase-like 1
Tssr22080 2 174110340 to 174110394 54 + TSS region transcription start site region 22080
Tssr22081 2 174111050 to 174111073 23 + TSS region transcription start site region 22081
Tssr22082 2 174111093 to 174111102 9 + TSS region transcription start site region 22082
Tssr22083 2 174111109 to 174111135 26 + TSS region transcription start site region 22083
Tssr22084 2 174111142 to 174111156 14 + TSS region transcription start site region 22084
Tssr22085 2 174111199 to 174111208 9 + TSS region transcription start site region 22085
Tssr788 2 174115974 to 174115980 6 + TSS region transcription start site region 788
Cpgi12854 2 174120615 to 174121226 611 CpG island CpG island 12854
Tssr22086 2 174120848 to 174120860 12 + TSS region transcription start site region 22086
Gm10714 2 174125038 to 174183918 58880 - antisense lncRNA gene predicted gene 10714
D2Ucl1 2 174152094 to 174152299 205 DNA segment DNA segment, Chr 2, Univeristy College London 1
D2Mit199 2 174160091 to 174160398 307 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 199
Tssr28003 2 174169703 to 174169708 5 - TSS region transcription start site region 28003
D2Mit505 2 174222170 to 174222294 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 505
Gm27591 2 174247928 to 174247995 67 + miRNA gene predicted gene, 27591
Mir296 2 174267047 to 174267125 78 - miRNA gene microRNA 296
Mirc28 2 174267047 to 174267585 538 complex/cluster/region microRNA cluster 28, including Mir296 through Mir298
Tssr28004 2 174267053 to 174267057 4 - TSS region transcription start site region 28004
Mir298 2 174267504 to 174267585 81 - miRNA gene microRNA 298
Tssr28005 2 174276004 to 174276008 4 - TSS region transcription start site region 28005
D2Ertd173e 2 174277283 to 174277513 230 DNA segment DNA segment, Chr 2, ERATO Doi 173, expressed
Nespas 2 174281237 to 174295436 14199 - antisense lncRNA gene neuroendocrine secretory protein antisense
Cpgi12855 2 174284093 to 174286598 2505 CpG island CpG island 12855
Tssr789 2 174284228 to 174284237 9 + TSS region transcription start site region 789
Tssr790 2 174284268 to 174284293 25 + TSS region transcription start site region 790
Tssr22087 2 174284312 to 174284326 14 + TSS region transcription start site region 22087
Gnas 2 174284320 to 174346744 62424 + protein coding gene GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
Tssr22088 2 174284610 to 174284625 15 + TSS region transcription start site region 22088
Tssr28006 2 174285164 to 174285184 20 - TSS region transcription start site region 28006
Tssr22089 2 174285273 to 174285284 11 + TSS region transcription start site region 22089
Tssr22090 2 174285297 to 174285319 22 + TSS region transcription start site region 22090
Tssr22091 2 174285352 to 174285364 12 + TSS region transcription start site region 22091
Tssr28007 2 174286158 to 174286165 7 - TSS region transcription start site region 28007
Gm27899 2 174286608 to 174286671 63 + unclassified non-coding RNA gene predicted gene, 27899
Tssr22092 2 174289476 to 174289498 22 + TSS region transcription start site region 22092
Tssr22093 2 174289501 to 174289516 15 + TSS region transcription start site region 22093
Tssr22094 2 174289524 to 174289535 11 + TSS region transcription start site region 22094
Tssr22095 2 174289544 to 174289582 38 + TSS region transcription start site region 22095
Tssr22096 2 174289619 to 174289638 19 + TSS region transcription start site region 22096
Tssr22097 2 174289643 to 174289677 34 + TSS region transcription start site region 22097
Tssr22098 2 174289678 to 174289687 9 + TSS region transcription start site region 22098
Tssr22099 2 174289784 to 174289856 72 + TSS region transcription start site region 22099
Tssr22100 2 174289876 to 174289899 23 + TSS region transcription start site region 22100
Tssr22101 2 174289915 to 174290021 106 + TSS region transcription start site region 22101
Tssr28008 2 174294158 to 174294161 3 - TSS region transcription start site region 28008
Tssr22102 2 174294752 to 174294770 18 + TSS region transcription start site region 22102
Gm27869 2 174295071 to 174295192 121 + unclassified non-coding RNA gene predicted gene, 27869
Cpgi12856 2 174295197 to 174296545 1348 CpG island CpG island 12856
Gm27849 2 174295337 to 174295461 124 + unclassified non-coding RNA gene predicted gene, 27849
Tssr28009 2 174295401 to 174295442 41 - TSS region transcription start site region 28009
Tssr22103 2 174295612 to 174295631 19 + TSS region transcription start site region 22103
Cpgi12857 2 174296939 to 174297402 463 CpG island CpG island 12857
Tssr22104 2 174297327 to 174297353 26 + TSS region transcription start site region 22104
Cpgi12858 2 174298234 to 174301029 2795 CpG island CpG island 12858
Tssr22105 2 174298729 to 174298741 12 + TSS region transcription start site region 22105
Tssr22106 2 174298921 to 174298938 17 + TSS region transcription start site region 22106
Tssr22107 2 174302262 to 174302267 5 + TSS region transcription start site region 22107
Tssr22108 2 174304109 to 174304112 3 + TSS region transcription start site region 22108
Tssr22109 2 174304321 to 174304327 6 + TSS region transcription start site region 22109
Tssr22110 2 174304334 to 174304348 14 + TSS region transcription start site region 22110
Tssr22111 2 174304357 to 174304360 3 + TSS region transcription start site region 22111
Tssr22112 2 174304361 to 174304372 11 + TSS region transcription start site region 22112
Tssr22113 2 174304554 to 174304561 7 + TSS region transcription start site region 22113
Tssr22114 2 174304562 to 174304571 9 + TSS region transcription start site region 22114
Tssr22115 2 174304575 to 174304576 1 + TSS region transcription start site region 22115
Tssr22116 2 174304601 to 174304606 5 + TSS region transcription start site region 22116
Tssr22117 2 174304727 to 174304730 3 + TSS region transcription start site region 22117
Tssr22118 2 174304755 to 174304758 3 + TSS region transcription start site region 22118
Tssr22119 2 174308313 to 174308335 22 + TSS region transcription start site region 22119
Tssr22120 2 174308445 to 174308522 77 + TSS region transcription start site region 22120
Tssr22121 2 174310016 to 174310020 4 + TSS region transcription start site region 22121
Gm30189 2 174320908 to 174327388 6480 - lncRNA gene predicted gene, 30189