Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:173277312-174198079

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rvfs1 2 135590624 to 173607823 38017199 QTL Rift Valley fever susceptibility 1
Pmepa1os 2 173276698 to 173278428 1730 + antisense lncRNA gene prostate transmembrane protein, androgen induced 1, opposite strand
Gm46780 2 173288383 to 173290130 1747 - lncRNA gene predicted gene, 46780
Gm36859 2 173290295 to 173291597 1302 - lncRNA gene predicted gene, 36859
Tssr785 2 173291120 to 173291133 13 - TSS region transcription start site region 785
Tssr27990 2 173291137 to 173291168 31 - TSS region transcription start site region 27990
Tssr27991 2 173291175 to 173291180 5 - TSS region transcription start site region 27991
Tssr22054 2 173291227 to 173291258 31 + TSS region transcription start site region 22054
1700039O17Rik 2 173291254 to 173291595 341 unclassified gene RIKEN cDNA 1700039O17 gene
4932434E15Rik 2 173295532 to 173298983 3451 unclassified non-coding RNA gene RIKEN cDNA 4932434E15 gene
Tssr27992 2 173305129 to 173305145 16 - TSS region transcription start site region 27992
Gm36911 2 173346809 to 173370431 23622 + lncRNA gene predicted gene, 36911
Tssr27993 2 173348901 to 173348907 6 - TSS region transcription start site region 27993
Lith12 2 173354671 to 173354817 146 QTL lithogenic gene 12
D2Mit113 2 173354671 to 173354817 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 113
D2Mit502 2 173369625 to 173369769 144 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 502
Gm29859 2 173373339 to 173377890 4551 - lncRNA gene predicted gene, 29859
Gm14642 2 173394566 to 173395720 1154 + lincRNA gene predicted gene 14642
Tssr22055 2 173407056 to 173407067 11 + TSS region transcription start site region 22055
Cpgi12843 2 173413935 to 173414105 170 CpG island CpG island 12843
Tssr27994 2 173436721 to 173436730 9 - TSS region transcription start site region 27994
Cpgi12844 2 173522546 to 173522743 197 CpG island CpG island 12844
Tssr22056 2 173522575 to 173522581 6 + TSS region transcription start site region 22056
Tssr22057 2 173522588 to 173522618 30 + TSS region transcription start site region 22057
1700021F07Rik 2 173522592 to 173528502 5910 + protein coding gene RIKEN cDNA 1700021F07 gene
Tssr22058 2 173522622 to 173522635 13 + TSS region transcription start site region 22058
Tssr22059 2 173522663 to 173522671 8 + TSS region transcription start site region 22059
Cpgi12845 2 173535364 to 173535607 243 CpG island CpG island 12845
Ankrd60 2 173568661 to 173578341 9680 - protein coding gene ankyrin repeat domain 60
Cpgi12846 2 173577789 to 173578815 1026 CpG island CpG island 12846
Tssr27995 2 173578171 to 173578180 9 - TSS region transcription start site region 27995
Tssr27996 2 173578188 to 173578199 11 - TSS region transcription start site region 27996
Tssr27997 2 173578203 to 173578211 8 - TSS region transcription start site region 27997
Tssr27998 2 173578215 to 173578278 63 - TSS region transcription start site region 27998
Tssr27999 2 173578300 to 173578334 34 - TSS region transcription start site region 27999
Ppp4r1l-ps 2 173579320 to 173659539 80219 - pseudogene protein phosphatase 4, regulatory subunit 1-like, pseudogene
Cpgi12847 2 173585310 to 173586933 1623 CpG island CpG island 12847
Cpgi12848 2 173659171 to 173660426 1255 CpG island CpG island 12848
Tssr28000 2 173659522 to 173659552 30 - TSS region transcription start site region 28000
Tssr22060 2 173659595 to 173659616 21 + TSS region transcription start site region 22060
Tssr22061 2 173659625 to 173659654 29 + TSS region transcription start site region 22061
Tssr28001 2 173659667 to 173659677 10 - TSS region transcription start site region 28001
Rab22a 2 173659765 to 173702186 42421 + protein coding gene RAB22A, member RAS oncogene family
Tssr22062 2 173659807 to 173659816 9 + TSS region transcription start site region 22062
Tssr22063 2 173659834 to 173659871 37 + TSS region transcription start site region 22063
Tssr22064 2 173660067 to 173660082 15 + TSS region transcription start site region 22064
A530082H02Rik 2 173676451 to 173679657 3206 unclassified gene RIKEN cDNA A530082H02 gene
Tssr22065 2 173685632 to 173685634 2 + TSS region transcription start site region 22065
Mir6340 2 173701030 to 173701148 118 - miRNA gene microRNA 6340
1700010B08Rik 2 173719415 to 173722086 2671 + protein coding gene RIKEN cDNA 1700010B08 gene
Tssr22066 2 173719426 to 173719437 11 + TSS region transcription start site region 22066
Tssr786 2 173719447 to 173719456 9 + TSS region transcription start site region 786
Tssr22067 2 173719467 to 173719502 35 + TSS region transcription start site region 22067
Cpgi12849 2 173737312 to 173738079 767 CpG island CpG island 12849
Tssr22068 2 173737478 to 173737490 12 + TSS region transcription start site region 22068
Tssr22069 2 173737492 to 173737503 11 + TSS region transcription start site region 22069
Tssr22070 2 173737555 to 173737601 46 + TSS region transcription start site region 22070
Vapb 2 173737571 to 173784336 46765 + protein coding gene vesicle-associated membrane protein, associated protein B and C
Tssr22071 2 173737602 to 173737632 30 + TSS region transcription start site region 22071
Tssr22072 2 173737639 to 173737646 7 + TSS region transcription start site region 22072
Gm18917 2 173749918 to 173750490 572 + pseudogene predicted gene, 18917
Tssr787 2 173768243 to 173768264 21 + TSS region transcription start site region 787
Tssr22073 2 173779213 to 173779226 13 + TSS region transcription start site region 22073
Tssr22074 2 173788354 to 173788360 6 + TSS region transcription start site region 22074
Gm14371 2 173793437 to 173847670 54233 - pseudogene predicted gene 14371
Tssr22075 2 173800052 to 173800054 2 + TSS region transcription start site region 22075
Gm30017 2 173874285 to 173885809 11524 + lncRNA gene predicted gene, 30017
Gm14336 2 173920352 to 173920826 474 - pseudogene predicted gene 14336
Atp5k-ps2 2 173984482 to 173984691 209 - pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 2
Cpgi12850 2 174015276 to 174015547 271 CpG island CpG island 12850
Gm30143 2 174019231 to 174021928 2697 + lncRNA gene predicted gene, 30143
Tssr22076 2 174019255 to 174019270 15 + TSS region transcription start site region 22076
Vamp7-ps 2 174046619 to 174047273 654 - pseudogene vesicle-associated membrane protein 7, pseudogene
Tssr28002 2 174047350 to 174047381 31 - TSS region transcription start site region 28002
Cpgi12851 2 174075009 to 174075304 295 CpG island CpG island 12851
Cpgi12852 2 174076147 to 174077243 1096 CpG island CpG island 12852
Tssr22077 2 174076296 to 174076356 60 + TSS region transcription start site region 22077
Stx16 2 174076308 to 174099771 23463 + protein coding gene syntaxin 16
Tssr22078 2 174077045 to 174077059 14 + TSS region transcription start site region 22078
D130084N16Rik 2 174077472 to 174079431 1959 unclassified gene RIKEN cDNA D130084N16 gene
Tssr22079 2 174097703 to 174097718 15 + TSS region transcription start site region 22079
Cpgi12853 2 174109887 to 174111258 1371 CpG island CpG island 12853
Npepl1 2 174110338 to 174122702 12364 + protein coding gene aminopeptidase-like 1
Tssr22080 2 174110340 to 174110394 54 + TSS region transcription start site region 22080
Tssr22081 2 174111050 to 174111073 23 + TSS region transcription start site region 22081
Tssr22082 2 174111093 to 174111102 9 + TSS region transcription start site region 22082
Tssr22083 2 174111109 to 174111135 26 + TSS region transcription start site region 22083
Tssr22084 2 174111142 to 174111156 14 + TSS region transcription start site region 22084
Tssr22085 2 174111199 to 174111208 9 + TSS region transcription start site region 22085
Tssr788 2 174115974 to 174115980 6 + TSS region transcription start site region 788
Cpgi12854 2 174120615 to 174121226 611 CpG island CpG island 12854
Tssr22086 2 174120848 to 174120860 12 + TSS region transcription start site region 22086
Gm10714 2 174125038 to 174183918 58880 - antisense lncRNA gene predicted gene 10714
D2Ucl1 2 174152094 to 174152299 205 DNA segment DNA segment, Chr 2, Univeristy College London 1
D2Mit199 2 174160091 to 174160398 307 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 199
Tssr28003 2 174169703 to 174169708 5 - TSS region transcription start site region 28003