Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:173118879-173318931

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40011 2 173082780 to 173138200 55420 + protein coding gene predicted gene, 40011
Ctcfl 2 173093609 to 173119525 25916 - protein coding gene CCCTC-binding factor (zinc finger protein)-like
Cpgi12840 2 173119072 to 173119430 358 CpG island CpG island 12840
Tssr27963 2 173119402 to 173119415 13 - TSS region transcription start site region 27963
Ctcflos 2 173124749 to 173133204 8455 + antisense lncRNA gene CCCTC-binding factor (zinc finger protein)-like, opposite strand
Tssr22017 2 173137105 to 173137126 21 + TSS region transcription start site region 22017
Gm36691 2 173143207 to 173148396 5189 - lncRNA gene predicted gene, 36691
Gm36749 2 173143571 to 173146488 2917 + lncRNA gene predicted gene, 36749
Tssr27964 2 173148043 to 173148060 17 - TSS region transcription start site region 27964
Tssr27965 2 173148122 to 173148152 30 - TSS region transcription start site region 27965
Tssr22018 2 173153060 to 173153080 20 + TSS region transcription start site region 22018
Pck1 2 173153073 to 173159254 6181 + protein coding gene phosphoenolpyruvate carboxykinase 1, cytosolic
Tssr27966 2 173154004 to 173154034 30 - TSS region transcription start site region 27966
Tssr22019 2 173154731 to 173154748 17 + TSS region transcription start site region 22019
Tssr22020 2 173154761 to 173154787 26 + TSS region transcription start site region 22020
Tssr22021 2 173155940 to 173155952 12 + TSS region transcription start site region 22021
Tssr22022 2 173155960 to 173155970 10 + TSS region transcription start site region 22022
Tssr22023 2 173156060 to 173156071 11 + TSS region transcription start site region 22023
Tssr22024 2 173156095 to 173156108 13 + TSS region transcription start site region 22024
Tssr22025 2 173156138 to 173156162 24 + TSS region transcription start site region 22025
Tssr22026 2 173156204 to 173156221 17 + TSS region transcription start site region 22026
Tssr22027 2 173156252 to 173156261 9 + TSS region transcription start site region 22027
Tssr22028 2 173156276 to 173156291 15 + TSS region transcription start site region 22028
Tssr22029 2 173156304 to 173156312 8 + TSS region transcription start site region 22029
Tssr22030 2 173156318 to 173156328 10 + TSS region transcription start site region 22030
Tssr22031 2 173156330 to 173156359 29 + TSS region transcription start site region 22031
Tssr22032 2 173156363 to 173156374 11 + TSS region transcription start site region 22032
Tssr22033 2 173156376 to 173156387 11 + TSS region transcription start site region 22033
Tssr22034 2 173156391 to 173156400 9 + TSS region transcription start site region 22034
Tssr22035 2 173156438 to 173156449 11 + TSS region transcription start site region 22035
Tssr22036 2 173157081 to 173157095 14 + TSS region transcription start site region 22036
Tssr22037 2 173157989 to 173158005 16 + TSS region transcription start site region 22037
Tssr22038 2 173158359 to 173158375 16 + TSS region transcription start site region 22038
Tssr22039 2 173158409 to 173158431 22 + TSS region transcription start site region 22039
Tssr22040 2 173158484 to 173158495 11 + TSS region transcription start site region 22040
Tssr22041 2 173158654 to 173158667 13 + TSS region transcription start site region 22041
Tssr22042 2 173158739 to 173158750 11 + TSS region transcription start site region 22042
Tssr22043 2 173158772 to 173158781 9 + TSS region transcription start site region 22043
Tssr22044 2 173158824 to 173158837 13 + TSS region transcription start site region 22044
Tssr22045 2 173158870 to 173158888 18 + TSS region transcription start site region 22045
Tssr22046 2 173159019 to 173159043 24 + TSS region transcription start site region 22046
Tssr27967 2 173159075 to 173159081 6 - TSS region transcription start site region 27967
Tssr22047 2 173159200 to 173159205 5 + TSS region transcription start site region 22047
Cpgi12841 2 173171442 to 173172049 607 CpG island CpG island 12841
Tssr782 2 173173659 to 173173672 13 + TSS region transcription start site region 782
Zbp1 2 173206612 to 173218922 12310 - protein coding gene Z-DNA binding protein 1
Tssr27968 2 173211794 to 173211809 15 - TSS region transcription start site region 27968
Tssr27969 2 173213800 to 173213815 15 - TSS region transcription start site region 27969
Tssr27970 2 173213914 to 173213921 7 - TSS region transcription start site region 27970
Tssr22048 2 173215705 to 173215749 44 + TSS region transcription start site region 22048
Tssr27971 2 173215764 to 173215805 41 - TSS region transcription start site region 27971
Tssr27972 2 173215807 to 173215842 35 - TSS region transcription start site region 27972
Tssr27973 2 173216867 to 173216883 16 - TSS region transcription start site region 27973
Tssr22049 2 173216883 to 173216898 15 + TSS region transcription start site region 22049
Tssr27974 2 173216961 to 173216987 26 - TSS region transcription start site region 27974
Tssr27975 2 173216990 to 173217013 23 - TSS region transcription start site region 27975
Tssr27976 2 173217669 to 173217715 46 - TSS region transcription start site region 27976
Tssr783 2 173218793 to 173218802 9 - TSS region transcription start site region 783
Tssr27977 2 173218818 to 173218833 15 - TSS region transcription start site region 27977
Tssr27978 2 173218856 to 173218876 20 - TSS region transcription start site region 27978
Tssr27979 2 173218879 to 173218931 52 - TSS region transcription start site region 27979
Tssr27980 2 173218961 to 173218975 14 - TSS region transcription start site region 27980
Pmepa1 2 173224458 to 173276533 52075 - protein coding gene prostate transmembrane protein, androgen induced 1
Tssr27981 2 173247232 to 173247243 11 - TSS region transcription start site region 27981
Tssr22050 2 173265050 to 173265057 7 + TSS region transcription start site region 22050
Tssr27982 2 173265934 to 173265939 5 - TSS region transcription start site region 27982
Tssr27983 2 173269439 to 173269447 8 - TSS region transcription start site region 27983
Tssr22051 2 173273016 to 173273019 3 + TSS region transcription start site region 22051
Cpgi12842 2 173275190 to 173277030 1840 CpG island CpG island 12842
Tssr784 2 173275335 to 173275362 27 + TSS region transcription start site region 784
Tssr22052 2 173275493 to 173275504 11 + TSS region transcription start site region 22052
Tssr27984 2 173276144 to 173276184 40 - TSS region transcription start site region 27984
Tssr27985 2 173276197 to 173276208 11 - TSS region transcription start site region 27985
Tssr27986 2 173276447 to 173276452 5 - TSS region transcription start site region 27986
Tssr27987 2 173276469 to 173276499 30 - TSS region transcription start site region 27987
Tssr27988 2 173276526 to 173276544 18 - TSS region transcription start site region 27988
Tssr22053 2 173276683 to 173276711 28 + TSS region transcription start site region 22053
Pmepa1os 2 173276698 to 173278428 1730 + antisense lncRNA gene prostate transmembrane protein, androgen induced 1, opposite strand
Tssr27989 2 173276980 to 173276991 11 - TSS region transcription start site region 27989
Gm46780 2 173288383 to 173290130 1747 - lncRNA gene predicted gene, 46780
Gm36859 2 173290295 to 173291597 1302 - lncRNA gene predicted gene, 36859
Tssr785 2 173291120 to 173291133 13 - TSS region transcription start site region 785
Tssr27990 2 173291137 to 173291168 31 - TSS region transcription start site region 27990
Tssr27991 2 173291175 to 173291180 5 - TSS region transcription start site region 27991
Tssr22054 2 173291227 to 173291258 31 + TSS region transcription start site region 22054
1700039O17Rik 2 173291254 to 173291595 341 unclassified gene RIKEN cDNA 1700039O17 gene
4932434E15Rik 2 173295532 to 173298983 3451 unclassified non-coding RNA gene RIKEN cDNA 4932434E15 gene
Tssr27992 2 173305129 to 173305145 16 - TSS region transcription start site region 27992