Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:173109447-174329456

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246 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rvfs1 2 135590624 to 173607823 38017199 QTL Rift Valley fever susceptibility 1
Gm40011 2 173082780 to 173138200 55420 + protein coding gene predicted gene, 40011
Ctcfl 2 173093609 to 173119525 25916 - protein coding gene CCCTC-binding factor (zinc finger protein)-like
Tssr22014 2 173110796 to 173110817 21 + TSS region transcription start site region 22014
Tssr22015 2 173110820 to 173110834 14 + TSS region transcription start site region 22015
Tssr22016 2 173110848 to 173110855 7 + TSS region transcription start site region 22016
Cpgi12839 2 173118446 to 173118602 156 CpG island CpG island 12839
Cpgi12840 2 173119072 to 173119430 358 CpG island CpG island 12840
Tssr27963 2 173119402 to 173119415 13 - TSS region transcription start site region 27963
Ctcflos 2 173124749 to 173133204 8455 + antisense lncRNA gene CCCTC-binding factor (zinc finger protein)-like, opposite strand
Tssr22017 2 173137105 to 173137126 21 + TSS region transcription start site region 22017
Gm36691 2 173143207 to 173148396 5189 - lncRNA gene predicted gene, 36691
Gm36749 2 173143571 to 173146488 2917 + lncRNA gene predicted gene, 36749
Tssr27964 2 173148043 to 173148060 17 - TSS region transcription start site region 27964
Tssr27965 2 173148122 to 173148152 30 - TSS region transcription start site region 27965
Tssr22018 2 173153060 to 173153080 20 + TSS region transcription start site region 22018
Pck1 2 173153073 to 173159254 6181 + protein coding gene phosphoenolpyruvate carboxykinase 1, cytosolic
Tssr27966 2 173154004 to 173154034 30 - TSS region transcription start site region 27966
Tssr22019 2 173154731 to 173154748 17 + TSS region transcription start site region 22019
Tssr22020 2 173154761 to 173154787 26 + TSS region transcription start site region 22020
Tssr22021 2 173155940 to 173155952 12 + TSS region transcription start site region 22021
Tssr22022 2 173155960 to 173155970 10 + TSS region transcription start site region 22022
Tssr22023 2 173156060 to 173156071 11 + TSS region transcription start site region 22023
Tssr22024 2 173156095 to 173156108 13 + TSS region transcription start site region 22024
Tssr22025 2 173156138 to 173156162 24 + TSS region transcription start site region 22025
Tssr22026 2 173156204 to 173156221 17 + TSS region transcription start site region 22026
Tssr22027 2 173156252 to 173156261 9 + TSS region transcription start site region 22027
Tssr22028 2 173156276 to 173156291 15 + TSS region transcription start site region 22028
Tssr22029 2 173156304 to 173156312 8 + TSS region transcription start site region 22029
Tssr22030 2 173156318 to 173156328 10 + TSS region transcription start site region 22030
Tssr22031 2 173156330 to 173156359 29 + TSS region transcription start site region 22031
Tssr22032 2 173156363 to 173156374 11 + TSS region transcription start site region 22032
Tssr22033 2 173156376 to 173156387 11 + TSS region transcription start site region 22033
Tssr22034 2 173156391 to 173156400 9 + TSS region transcription start site region 22034
Tssr22035 2 173156438 to 173156449 11 + TSS region transcription start site region 22035
Tssr22036 2 173157081 to 173157095 14 + TSS region transcription start site region 22036
Tssr22037 2 173157989 to 173158005 16 + TSS region transcription start site region 22037
Tssr22038 2 173158359 to 173158375 16 + TSS region transcription start site region 22038
Tssr22039 2 173158409 to 173158431 22 + TSS region transcription start site region 22039
Tssr22040 2 173158484 to 173158495 11 + TSS region transcription start site region 22040
Tssr22041 2 173158654 to 173158667 13 + TSS region transcription start site region 22041
Tssr22042 2 173158739 to 173158750 11 + TSS region transcription start site region 22042
Tssr22043 2 173158772 to 173158781 9 + TSS region transcription start site region 22043
Tssr22044 2 173158824 to 173158837 13 + TSS region transcription start site region 22044
Tssr22045 2 173158870 to 173158888 18 + TSS region transcription start site region 22045
Tssr22046 2 173159019 to 173159043 24 + TSS region transcription start site region 22046
Tssr27967 2 173159075 to 173159081 6 - TSS region transcription start site region 27967
Tssr22047 2 173159200 to 173159205 5 + TSS region transcription start site region 22047
Cpgi12841 2 173171442 to 173172049 607 CpG island CpG island 12841
Tssr782 2 173173659 to 173173672 13 + TSS region transcription start site region 782
Zbp1 2 173206612 to 173218922 12310 - protein coding gene Z-DNA binding protein 1
Tssr27968 2 173211794 to 173211809 15 - TSS region transcription start site region 27968
Tssr27969 2 173213800 to 173213815 15 - TSS region transcription start site region 27969
Tssr27970 2 173213914 to 173213921 7 - TSS region transcription start site region 27970
Tssr22048 2 173215705 to 173215749 44 + TSS region transcription start site region 22048
Tssr27971 2 173215764 to 173215805 41 - TSS region transcription start site region 27971
Tssr27972 2 173215807 to 173215842 35 - TSS region transcription start site region 27972
Tssr27973 2 173216867 to 173216883 16 - TSS region transcription start site region 27973
Tssr22049 2 173216883 to 173216898 15 + TSS region transcription start site region 22049
Tssr27974 2 173216961 to 173216987 26 - TSS region transcription start site region 27974
Tssr27975 2 173216990 to 173217013 23 - TSS region transcription start site region 27975
Tssr27976 2 173217669 to 173217715 46 - TSS region transcription start site region 27976
Tssr783 2 173218793 to 173218802 9 - TSS region transcription start site region 783
Tssr27977 2 173218818 to 173218833 15 - TSS region transcription start site region 27977
Tssr27978 2 173218856 to 173218876 20 - TSS region transcription start site region 27978
Tssr27979 2 173218879 to 173218931 52 - TSS region transcription start site region 27979
Tssr27980 2 173218961 to 173218975 14 - TSS region transcription start site region 27980
Pmepa1 2 173224458 to 173276533 52075 - protein coding gene prostate transmembrane protein, androgen induced 1
Tssr27981 2 173247232 to 173247243 11 - TSS region transcription start site region 27981
Tssr22050 2 173265050 to 173265057 7 + TSS region transcription start site region 22050
Tssr27982 2 173265934 to 173265939 5 - TSS region transcription start site region 27982
Tssr27983 2 173269439 to 173269447 8 - TSS region transcription start site region 27983
Tssr22051 2 173273016 to 173273019 3 + TSS region transcription start site region 22051
Cpgi12842 2 173275190 to 173277030 1840 CpG island CpG island 12842
Tssr784 2 173275335 to 173275362 27 + TSS region transcription start site region 784
Tssr22052 2 173275493 to 173275504 11 + TSS region transcription start site region 22052
Tssr27984 2 173276144 to 173276184 40 - TSS region transcription start site region 27984
Tssr27985 2 173276197 to 173276208 11 - TSS region transcription start site region 27985
Tssr27986 2 173276447 to 173276452 5 - TSS region transcription start site region 27986
Tssr27987 2 173276469 to 173276499 30 - TSS region transcription start site region 27987
Tssr27988 2 173276526 to 173276544 18 - TSS region transcription start site region 27988
Tssr22053 2 173276683 to 173276711 28 + TSS region transcription start site region 22053
Pmepa1os 2 173276698 to 173278428 1730 + antisense lncRNA gene prostate transmembrane protein, androgen induced 1, opposite strand
Tssr27989 2 173276980 to 173276991 11 - TSS region transcription start site region 27989
Gm46780 2 173288383 to 173290130 1747 - lncRNA gene predicted gene, 46780
Gm36859 2 173290295 to 173291597 1302 - lncRNA gene predicted gene, 36859
Tssr785 2 173291120 to 173291133 13 - TSS region transcription start site region 785
Tssr27990 2 173291137 to 173291168 31 - TSS region transcription start site region 27990
Tssr27991 2 173291175 to 173291180 5 - TSS region transcription start site region 27991
Tssr22054 2 173291227 to 173291258 31 + TSS region transcription start site region 22054
1700039O17Rik 2 173291254 to 173291595 341 unclassified gene RIKEN cDNA 1700039O17 gene
4932434E15Rik 2 173295532 to 173298983 3451 unclassified non-coding RNA gene RIKEN cDNA 4932434E15 gene
Tssr27992 2 173305129 to 173305145 16 - TSS region transcription start site region 27992
Gm36911 2 173346809 to 173370431 23622 + lncRNA gene predicted gene, 36911
Tssr27993 2 173348901 to 173348907 6 - TSS region transcription start site region 27993
D2Mit113 2 173354671 to 173354817 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 113
Lith12 2 173354671 to 173354817 146 QTL lithogenic gene 12
D2Mit502 2 173369625 to 173369769 144 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 502
Gm29859 2 173373339 to 173377890 4551 - lncRNA gene predicted gene, 29859
Gm14642 2 173394566 to 173395720 1154 + lincRNA gene predicted gene 14642
Tssr22055 2 173407056 to 173407067 11 + TSS region transcription start site region 22055
Cpgi12843 2 173413935 to 173414105 170 CpG island CpG island 12843
Tssr27994 2 173436721 to 173436730 9 - TSS region transcription start site region 27994
Cpgi12844 2 173522546 to 173522743 197 CpG island CpG island 12844
Tssr22056 2 173522575 to 173522581 6 + TSS region transcription start site region 22056
Tssr22057 2 173522588 to 173522618 30 + TSS region transcription start site region 22057
1700021F07Rik 2 173522592 to 173528502 5910 + protein coding gene RIKEN cDNA 1700021F07 gene
Tssr22058 2 173522622 to 173522635 13 + TSS region transcription start site region 22058
Tssr22059 2 173522663 to 173522671 8 + TSS region transcription start site region 22059
Cpgi12845 2 173535364 to 173535607 243 CpG island CpG island 12845
Ankrd60 2 173568661 to 173578341 9680 - protein coding gene ankyrin repeat domain 60
Cpgi12846 2 173577789 to 173578815 1026 CpG island CpG island 12846
Tssr27995 2 173578171 to 173578180 9 - TSS region transcription start site region 27995
Tssr27996 2 173578188 to 173578199 11 - TSS region transcription start site region 27996
Tssr27997 2 173578203 to 173578211 8 - TSS region transcription start site region 27997
Tssr27998 2 173578215 to 173578278 63 - TSS region transcription start site region 27998
Tssr27999 2 173578300 to 173578334 34 - TSS region transcription start site region 27999
Ppp4r1l-ps 2 173579320 to 173659539 80219 - pseudogene protein phosphatase 4, regulatory subunit 1-like, pseudogene
Cpgi12847 2 173585310 to 173586933 1623 CpG island CpG island 12847
Cpgi12848 2 173659171 to 173660426 1255 CpG island CpG island 12848
Tssr28000 2 173659522 to 173659552 30 - TSS region transcription start site region 28000
Tssr22060 2 173659595 to 173659616 21 + TSS region transcription start site region 22060
Tssr22061 2 173659625 to 173659654 29 + TSS region transcription start site region 22061
Tssr28001 2 173659667 to 173659677 10 - TSS region transcription start site region 28001
Rab22a 2 173659765 to 173702186 42421 + protein coding gene RAB22A, member RAS oncogene family
Tssr22062 2 173659807 to 173659816 9 + TSS region transcription start site region 22062
Tssr22063 2 173659834 to 173659871 37 + TSS region transcription start site region 22063
Tssr22064 2 173660067 to 173660082 15 + TSS region transcription start site region 22064
A530082H02Rik 2 173676451 to 173679657 3206 unclassified gene RIKEN cDNA A530082H02 gene
Tssr22065 2 173685632 to 173685634 2 + TSS region transcription start site region 22065
Mir6340 2 173701030 to 173701148 118 - miRNA gene microRNA 6340
1700010B08Rik 2 173719415 to 173722086 2671 + protein coding gene RIKEN cDNA 1700010B08 gene
Tssr22066 2 173719426 to 173719437 11 + TSS region transcription start site region 22066
Tssr786 2 173719447 to 173719456 9 + TSS region transcription start site region 786
Tssr22067 2 173719467 to 173719502 35 + TSS region transcription start site region 22067
Cpgi12849 2 173737312 to 173738079 767 CpG island CpG island 12849
Tssr22068 2 173737478 to 173737490 12 + TSS region transcription start site region 22068
Tssr22069 2 173737492 to 173737503 11 + TSS region transcription start site region 22069
Tssr22070 2 173737555 to 173737601 46 + TSS region transcription start site region 22070
Vapb 2 173737571 to 173784336 46765 + protein coding gene vesicle-associated membrane protein, associated protein B and C
Tssr22071 2 173737602 to 173737632 30 + TSS region transcription start site region 22071
Tssr22072 2 173737639 to 173737646 7 + TSS region transcription start site region 22072
Gm18917 2 173749918 to 173750490 572 + pseudogene predicted gene, 18917
Tssr787 2 173768243 to 173768264 21 + TSS region transcription start site region 787
Tssr22073 2 173779213 to 173779226 13 + TSS region transcription start site region 22073
Tssr22074 2 173788354 to 173788360 6 + TSS region transcription start site region 22074
Gm14371 2 173793437 to 173847670 54233 - pseudogene predicted gene 14371
Tssr22075 2 173800052 to 173800054 2 + TSS region transcription start site region 22075
Gm30017 2 173874285 to 173885809 11524 + lncRNA gene predicted gene, 30017
Gm14336 2 173920352 to 173920826 474 - pseudogene predicted gene 14336
Atp5k-ps2 2 173984482 to 173984691 209 - pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 2
Cpgi12850 2 174015276 to 174015547 271 CpG island CpG island 12850
Gm30143 2 174019231 to 174021928 2697 + lncRNA gene predicted gene, 30143
Tssr22076 2 174019255 to 174019270 15 + TSS region transcription start site region 22076
Vamp7-ps 2 174046619 to 174047273 654 - pseudogene vesicle-associated membrane protein 7, pseudogene
Tssr28002 2 174047350 to 174047381 31 - TSS region transcription start site region 28002
Cpgi12851 2 174075009 to 174075304 295 CpG island CpG island 12851
Cpgi12852 2 174076147 to 174077243 1096 CpG island CpG island 12852
Tssr22077 2 174076296 to 174076356 60 + TSS region transcription start site region 22077
Stx16 2 174076308 to 174099771 23463 + protein coding gene syntaxin 16
Tssr22078 2 174077045 to 174077059 14 + TSS region transcription start site region 22078
D130084N16Rik 2 174077472 to 174079431 1959 unclassified gene RIKEN cDNA D130084N16 gene
Tssr22079 2 174097703 to 174097718 15 + TSS region transcription start site region 22079
Cpgi12853 2 174109887 to 174111258 1371 CpG island CpG island 12853
Npepl1 2 174110338 to 174122702 12364 + protein coding gene aminopeptidase-like 1
Tssr22080 2 174110340 to 174110394 54 + TSS region transcription start site region 22080
Tssr22081 2 174111050 to 174111073 23 + TSS region transcription start site region 22081
Tssr22082 2 174111093 to 174111102 9 + TSS region transcription start site region 22082
Tssr22083 2 174111109 to 174111135 26 + TSS region transcription start site region 22083
Tssr22084 2 174111142 to 174111156 14 + TSS region transcription start site region 22084
Tssr22085 2 174111199 to 174111208 9 + TSS region transcription start site region 22085
Tssr788 2 174115974 to 174115980 6 + TSS region transcription start site region 788
Cpgi12854 2 174120615 to 174121226 611 CpG island CpG island 12854
Tssr22086 2 174120848 to 174120860 12 + TSS region transcription start site region 22086
Gm10714 2 174125038 to 174183918 58880 - antisense lncRNA gene predicted gene 10714
D2Ucl1 2 174152094 to 174152299 205 DNA segment DNA segment, Chr 2, Univeristy College London 1
D2Mit199 2 174160091 to 174160398 307 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 199
Tssr28003 2 174169703 to 174169708 5 - TSS region transcription start site region 28003
D2Mit505 2 174222170 to 174222294 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 505
Gm27591 2 174247928 to 174247995 67 + miRNA gene predicted gene, 27591
Mir296 2 174267047 to 174267125 78 - miRNA gene microRNA 296
Mirc28 2 174267047 to 174267585 538 complex/cluster/region microRNA cluster 28, including Mir296 through Mir298
Tssr28004 2 174267053 to 174267057 4 - TSS region transcription start site region 28004
Mir298 2 174267504 to 174267585 81 - miRNA gene microRNA 298
Tssr28005 2 174276004 to 174276008 4 - TSS region transcription start site region 28005
D2Ertd173e 2 174277283 to 174277513 230 DNA segment DNA segment, Chr 2, ERATO Doi 173, expressed
Nespas 2 174281237 to 174295436 14199 - antisense lncRNA gene neuroendocrine secretory protein antisense
Cpgi12855 2 174284093 to 174286598 2505 CpG island CpG island 12855
Tssr789 2 174284228 to 174284237 9 + TSS region transcription start site region 789
Tssr790 2 174284268 to 174284293 25 + TSS region transcription start site region 790
Tssr22087 2 174284312 to 174284326 14 + TSS region transcription start site region 22087
Gnas 2 174284320 to 174346744 62424 + protein coding gene GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
Tssr22088 2 174284610 to 174284625 15 + TSS region transcription start site region 22088
Tssr28006 2 174285164 to 174285184 20 - TSS region transcription start site region 28006
Tssr22089 2 174285273 to 174285284 11 + TSS region transcription start site region 22089
Tssr22090 2 174285297 to 174285319 22 + TSS region transcription start site region 22090
Tssr22091 2 174285352 to 174285364 12 + TSS region transcription start site region 22091
Tssr28007 2 174286158 to 174286165 7 - TSS region transcription start site region 28007
Gm27899 2 174286608 to 174286671 63 + unclassified non-coding RNA gene predicted gene, 27899
Tssr22092 2 174289476 to 174289498 22 + TSS region transcription start site region 22092