Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 2:172982773-173182780

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90 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spo11 2 172977700 to 172993576 15876 + protein coding gene SPO11 meiotic protein covalently bound to DSB
Tssr21989 2 172992717 to 172992719 2 + TSS region transcription start site region 21989
Cpgi12836 2 172999715 to 173000981 1266 CpG island CpG island 12836
Tssr21990 2 173000114 to 173000125 11 + TSS region transcription start site region 21990
Rae1 2 173000117 to 173015739 15622 + protein coding gene ribonucleic acid export 1
Tssr21991 2 173000131 to 173000178 47 + TSS region transcription start site region 21991
Tssr21992 2 173006092 to 173006099 7 + TSS region transcription start site region 21992
Cpgi12837 2 173019658 to 173020253 595 CpG island CpG island 12837
Cpgi12838 2 173021644 to 173022879 1235 CpG island CpG island 12838
Tssr21993 2 173021895 to 173021906 11 + TSS region transcription start site region 21993
Rbm38 2 173021902 to 173034734 12832 + protein coding gene RNA binding motif protein 38
Tssr21994 2 173021922 to 173021939 17 + TSS region transcription start site region 21994
Tssr21995 2 173022360 to 173022388 28 + TSS region transcription start site region 21995
Gm20490 2 173022503 to 173022956 453 - lncRNA gene predicted gene 20490
Tssr21996 2 173023044 to 173023060 16 + TSS region transcription start site region 21996
Tssr27959 2 173023359 to 173023381 22 - TSS region transcription start site region 27959
Gm14453 2 173025685 to 173034580 8895 - lncRNA gene predicted gene 14453
Tssr21997 2 173033497 to 173033519 22 + TSS region transcription start site region 21997
Tssr27960 2 173033529 to 173033571 42 - TSS region transcription start site region 27960
Tssr27961 2 173033609 to 173033656 47 - TSS region transcription start site region 27961
Tssr21998 2 173034072 to 173034094 22 + TSS region transcription start site region 21998
Gm36337 2 173049684 to 173051799 2115 - lncRNA gene predicted gene, 36337
Gm36462 2 173060059 to 173061877 1818 - lncRNA gene predicted gene, 36462
Tssr21999 2 173061695 to 173061730 35 + TSS region transcription start site region 21999
Gm36417 2 173061712 to 173065582 3870 + lncRNA gene predicted gene, 36417
Tssr22000 2 173061745 to 173061756 11 + TSS region transcription start site region 22000
Tssr27962 2 173062102 to 173062128 26 - TSS region transcription start site region 27962
Tssr22001 2 173062278 to 173062289 11 + TSS region transcription start site region 22001
Tssr22002 2 173063539 to 173063546 7 + TSS region transcription start site region 22002
Tssr22003 2 173065302 to 173065307 5 + TSS region transcription start site region 22003
Tssr22004 2 173065978 to 173065980 2 + TSS region transcription start site region 22004
Tssr22005 2 173073171 to 173073175 4 + TSS region transcription start site region 22005
Tssr22006 2 173073189 to 173073202 13 + TSS region transcription start site region 22006
Tssr22007 2 173073206 to 173073218 12 + TSS region transcription start site region 22007
Tssr22008 2 173073221 to 173073230 9 + TSS region transcription start site region 22008
Tssr22009 2 173073239 to 173073254 15 + TSS region transcription start site region 22009
Tssr781 2 173073276 to 173073283 7 + TSS region transcription start site region 781
Tssr22010 2 173073287 to 173073298 11 + TSS region transcription start site region 22010
Tssr22011 2 173082773 to 173082780 7 + TSS region transcription start site region 22011
Gm40011 2 173082780 to 173138200 55420 + protein coding gene predicted gene, 40011
Tssr22012 2 173082800 to 173082810 10 + TSS region transcription start site region 22012
Tssr22013 2 173089901 to 173089904 3 + TSS region transcription start site region 22013
Ctcfl 2 173093609 to 173119525 25916 - protein coding gene CCCTC-binding factor (zinc finger protein)-like
Tssr22014 2 173110796 to 173110817 21 + TSS region transcription start site region 22014
Tssr22015 2 173110820 to 173110834 14 + TSS region transcription start site region 22015
Tssr22016 2 173110848 to 173110855 7 + TSS region transcription start site region 22016
Cpgi12839 2 173118446 to 173118602 156 CpG island CpG island 12839
Cpgi12840 2 173119072 to 173119430 358 CpG island CpG island 12840
Tssr27963 2 173119402 to 173119415 13 - TSS region transcription start site region 27963
Ctcflos 2 173124749 to 173133204 8455 + antisense lncRNA gene CCCTC-binding factor (zinc finger protein)-like, opposite strand
Tssr22017 2 173137105 to 173137126 21 + TSS region transcription start site region 22017
Gm36691 2 173143207 to 173148396 5189 - lncRNA gene predicted gene, 36691
Gm36749 2 173143571 to 173146488 2917 + lncRNA gene predicted gene, 36749
Tssr27964 2 173148043 to 173148060 17 - TSS region transcription start site region 27964
Tssr27965 2 173148122 to 173148152 30 - TSS region transcription start site region 27965
Tssr22018 2 173153060 to 173153080 20 + TSS region transcription start site region 22018
Pck1 2 173153073 to 173159254 6181 + protein coding gene phosphoenolpyruvate carboxykinase 1, cytosolic
Tssr27966 2 173154004 to 173154034 30 - TSS region transcription start site region 27966
Tssr22019 2 173154731 to 173154748 17 + TSS region transcription start site region 22019
Tssr22020 2 173154761 to 173154787 26 + TSS region transcription start site region 22020
Tssr22021 2 173155940 to 173155952 12 + TSS region transcription start site region 22021
Tssr22022 2 173155960 to 173155970 10 + TSS region transcription start site region 22022
Tssr22023 2 173156060 to 173156071 11 + TSS region transcription start site region 22023
Tssr22024 2 173156095 to 173156108 13 + TSS region transcription start site region 22024
Tssr22025 2 173156138 to 173156162 24 + TSS region transcription start site region 22025
Tssr22026 2 173156204 to 173156221 17 + TSS region transcription start site region 22026
Tssr22027 2 173156252 to 173156261 9 + TSS region transcription start site region 22027
Tssr22028 2 173156276 to 173156291 15 + TSS region transcription start site region 22028
Tssr22029 2 173156304 to 173156312 8 + TSS region transcription start site region 22029
Tssr22030 2 173156318 to 173156328 10 + TSS region transcription start site region 22030
Tssr22031 2 173156330 to 173156359 29 + TSS region transcription start site region 22031
Tssr22032 2 173156363 to 173156374 11 + TSS region transcription start site region 22032
Tssr22033 2 173156376 to 173156387 11 + TSS region transcription start site region 22033
Tssr22034 2 173156391 to 173156400 9 + TSS region transcription start site region 22034
Tssr22035 2 173156438 to 173156449 11 + TSS region transcription start site region 22035
Tssr22036 2 173157081 to 173157095 14 + TSS region transcription start site region 22036
Tssr22037 2 173157989 to 173158005 16 + TSS region transcription start site region 22037
Tssr22038 2 173158359 to 173158375 16 + TSS region transcription start site region 22038
Tssr22039 2 173158409 to 173158431 22 + TSS region transcription start site region 22039
Tssr22040 2 173158484 to 173158495 11 + TSS region transcription start site region 22040
Tssr22041 2 173158654 to 173158667 13 + TSS region transcription start site region 22041
Tssr22042 2 173158739 to 173158750 11 + TSS region transcription start site region 22042
Tssr22043 2 173158772 to 173158781 9 + TSS region transcription start site region 22043
Tssr22044 2 173158824 to 173158837 13 + TSS region transcription start site region 22044
Tssr22045 2 173158870 to 173158888 18 + TSS region transcription start site region 22045
Tssr22046 2 173159019 to 173159043 24 + TSS region transcription start site region 22046
Tssr27967 2 173159075 to 173159081 6 - TSS region transcription start site region 27967
Tssr22047 2 173159200 to 173159205 5 + TSS region transcription start site region 22047
Cpgi12841 2 173171442 to 173172049 607 CpG island CpG island 12841
Tssr782 2 173173659 to 173173672 13 + TSS region transcription start site region 782