Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:172969415-174472086

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368 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rvfs1 2 135590624 to 173607823 38017199 QTL Rift Valley fever susceptibility 1
Tssr780 2 172972503 to 172972504 1 + TSS region transcription start site region 780
Tssr21978 2 172977553 to 172977558 5 + TSS region transcription start site region 21978
Tssr21979 2 172977625 to 172977632 7 + TSS region transcription start site region 21979
Tssr21980 2 172977653 to 172977676 23 + TSS region transcription start site region 21980
Tssr21981 2 172977682 to 172977695 13 + TSS region transcription start site region 21981
Spo11 2 172977700 to 172993576 15876 + protein coding gene SPO11 meiotic protein covalently bound to DSB
Tssr21982 2 172977700 to 172977711 11 + TSS region transcription start site region 21982
Tssr21983 2 172977731 to 172977751 20 + TSS region transcription start site region 21983
Tssr21984 2 172977758 to 172977789 31 + TSS region transcription start site region 21984
Tssr21985 2 172977852 to 172977863 11 + TSS region transcription start site region 21985
Tssr21986 2 172977875 to 172977901 26 + TSS region transcription start site region 21986
Tssr21987 2 172977908 to 172977922 14 + TSS region transcription start site region 21987
Tssr27958 2 172978341 to 172978381 40 - TSS region transcription start site region 27958
Cpgi12835 2 172979767 to 172980176 409 CpG island CpG island 12835
Tssr21988 2 172979827 to 172979879 52 + TSS region transcription start site region 21988
D2Mit528.2 2 172982035 to 172982146 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 528.2
Cfld1 2 172982127 to 172982222 95 QTL cystic fibrosis lung disease 1
D2Mit528 2 172982127 to 172982222 95 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 528
Tssr21989 2 172992717 to 172992719 2 + TSS region transcription start site region 21989
Cpgi12836 2 172999715 to 173000981 1266 CpG island CpG island 12836
Tssr21990 2 173000114 to 173000125 11 + TSS region transcription start site region 21990
Rae1 2 173000117 to 173015739 15622 + protein coding gene ribonucleic acid export 1
Tssr21991 2 173000131 to 173000178 47 + TSS region transcription start site region 21991
Tssr21992 2 173006092 to 173006099 7 + TSS region transcription start site region 21992
Cpgi12837 2 173019658 to 173020253 595 CpG island CpG island 12837
Cpgi12838 2 173021644 to 173022879 1235 CpG island CpG island 12838
Tssr21993 2 173021895 to 173021906 11 + TSS region transcription start site region 21993
Rbm38 2 173021902 to 173034734 12832 + protein coding gene RNA binding motif protein 38
Tssr21994 2 173021922 to 173021939 17 + TSS region transcription start site region 21994
Tssr21995 2 173022360 to 173022388 28 + TSS region transcription start site region 21995
Gm20490 2 173022503 to 173022956 453 - unclassified non-coding RNA gene predicted gene 20490
Tssr21996 2 173023044 to 173023060 16 + TSS region transcription start site region 21996
Tssr27959 2 173023359 to 173023381 22 - TSS region transcription start site region 27959
Gm14453 2 173025685 to 173034580 8895 - antisense lncRNA gene predicted gene 14453
Tssr21997 2 173033497 to 173033519 22 + TSS region transcription start site region 21997
Tssr27960 2 173033529 to 173033571 42 - TSS region transcription start site region 27960
Tssr27961 2 173033609 to 173033656 47 - TSS region transcription start site region 27961
Tssr21998 2 173034072 to 173034094 22 + TSS region transcription start site region 21998
Gm36337 2 173049684 to 173051799 2115 - lncRNA gene predicted gene, 36337
Gm36462 2 173060059 to 173061877 1818 - lncRNA gene predicted gene, 36462
Tssr21999 2 173061695 to 173061730 35 + TSS region transcription start site region 21999
Gm36417 2 173061712 to 173065582 3870 + lncRNA gene predicted gene, 36417
Tssr22000 2 173061745 to 173061756 11 + TSS region transcription start site region 22000
Tssr27962 2 173062102 to 173062128 26 - TSS region transcription start site region 27962
Tssr22001 2 173062278 to 173062289 11 + TSS region transcription start site region 22001
Tssr22002 2 173063539 to 173063546 7 + TSS region transcription start site region 22002
Tssr22003 2 173065302 to 173065307 5 + TSS region transcription start site region 22003
Tssr22004 2 173065978 to 173065980 2 + TSS region transcription start site region 22004
Tssr22005 2 173073171 to 173073175 4 + TSS region transcription start site region 22005
Tssr22006 2 173073189 to 173073202 13 + TSS region transcription start site region 22006
Tssr22007 2 173073206 to 173073218 12 + TSS region transcription start site region 22007
Tssr22008 2 173073221 to 173073230 9 + TSS region transcription start site region 22008
Tssr22009 2 173073239 to 173073254 15 + TSS region transcription start site region 22009
Tssr781 2 173073276 to 173073283 7 + TSS region transcription start site region 781
Tssr22010 2 173073287 to 173073298 11 + TSS region transcription start site region 22010
Tssr22011 2 173082773 to 173082780 7 + TSS region transcription start site region 22011
Gm40011 2 173082780 to 173138200 55420 + protein coding gene predicted gene, 40011
Tssr22012 2 173082800 to 173082810 10 + TSS region transcription start site region 22012
Tssr22013 2 173089901 to 173089904 3 + TSS region transcription start site region 22013
Ctcfl 2 173093609 to 173119525 25916 - protein coding gene CCCTC-binding factor (zinc finger protein)-like
Tssr22014 2 173110796 to 173110817 21 + TSS region transcription start site region 22014
Tssr22015 2 173110820 to 173110834 14 + TSS region transcription start site region 22015
Tssr22016 2 173110848 to 173110855 7 + TSS region transcription start site region 22016
Cpgi12839 2 173118446 to 173118602 156 CpG island CpG island 12839
Cpgi12840 2 173119072 to 173119430 358 CpG island CpG island 12840
Tssr27963 2 173119402 to 173119415 13 - TSS region transcription start site region 27963
Ctcflos 2 173124749 to 173133204 8455 + antisense lncRNA gene CCCTC-binding factor (zinc finger protein)-like, opposite strand
Tssr22017 2 173137105 to 173137126 21 + TSS region transcription start site region 22017
Gm36691 2 173143207 to 173148396 5189 - lncRNA gene predicted gene, 36691
Gm36749 2 173143571 to 173146488 2917 + lncRNA gene predicted gene, 36749
Tssr27964 2 173148043 to 173148060 17 - TSS region transcription start site region 27964
Tssr27965 2 173148122 to 173148152 30 - TSS region transcription start site region 27965
Tssr22018 2 173153060 to 173153080 20 + TSS region transcription start site region 22018
Pck1 2 173153073 to 173159254 6181 + protein coding gene phosphoenolpyruvate carboxykinase 1, cytosolic
Tssr27966 2 173154004 to 173154034 30 - TSS region transcription start site region 27966
Tssr22019 2 173154731 to 173154748 17 + TSS region transcription start site region 22019
Tssr22020 2 173154761 to 173154787 26 + TSS region transcription start site region 22020
Tssr22021 2 173155940 to 173155952 12 + TSS region transcription start site region 22021
Tssr22022 2 173155960 to 173155970 10 + TSS region transcription start site region 22022
Tssr22023 2 173156060 to 173156071 11 + TSS region transcription start site region 22023
Tssr22024 2 173156095 to 173156108 13 + TSS region transcription start site region 22024
Tssr22025 2 173156138 to 173156162 24 + TSS region transcription start site region 22025
Tssr22026 2 173156204 to 173156221 17 + TSS region transcription start site region 22026
Tssr22027 2 173156252 to 173156261 9 + TSS region transcription start site region 22027
Tssr22028 2 173156276 to 173156291 15 + TSS region transcription start site region 22028
Tssr22029 2 173156304 to 173156312 8 + TSS region transcription start site region 22029
Tssr22030 2 173156318 to 173156328 10 + TSS region transcription start site region 22030
Tssr22031 2 173156330 to 173156359 29 + TSS region transcription start site region 22031
Tssr22032 2 173156363 to 173156374 11 + TSS region transcription start site region 22032
Tssr22033 2 173156376 to 173156387 11 + TSS region transcription start site region 22033
Tssr22034 2 173156391 to 173156400 9 + TSS region transcription start site region 22034
Tssr22035 2 173156438 to 173156449 11 + TSS region transcription start site region 22035
Tssr22036 2 173157081 to 173157095 14 + TSS region transcription start site region 22036
Tssr22037 2 173157989 to 173158005 16 + TSS region transcription start site region 22037
Tssr22038 2 173158359 to 173158375 16 + TSS region transcription start site region 22038
Tssr22039 2 173158409 to 173158431 22 + TSS region transcription start site region 22039
Tssr22040 2 173158484 to 173158495 11 + TSS region transcription start site region 22040
Tssr22041 2 173158654 to 173158667 13 + TSS region transcription start site region 22041
Tssr22042 2 173158739 to 173158750 11 + TSS region transcription start site region 22042
Tssr22043 2 173158772 to 173158781 9 + TSS region transcription start site region 22043
Tssr22044 2 173158824 to 173158837 13 + TSS region transcription start site region 22044
Tssr22045 2 173158870 to 173158888 18 + TSS region transcription start site region 22045
Tssr22046 2 173159019 to 173159043 24 + TSS region transcription start site region 22046
Tssr27967 2 173159075 to 173159081 6 - TSS region transcription start site region 27967
Tssr22047 2 173159200 to 173159205 5 + TSS region transcription start site region 22047
Cpgi12841 2 173171442 to 173172049 607 CpG island CpG island 12841
Tssr782 2 173173659 to 173173672 13 + TSS region transcription start site region 782
Zbp1 2 173206612 to 173218922 12310 - protein coding gene Z-DNA binding protein 1
Tssr27968 2 173211794 to 173211809 15 - TSS region transcription start site region 27968
Tssr27969 2 173213800 to 173213815 15 - TSS region transcription start site region 27969
Tssr27970 2 173213914 to 173213921 7 - TSS region transcription start site region 27970
Tssr22048 2 173215705 to 173215749 44 + TSS region transcription start site region 22048
Tssr27971 2 173215764 to 173215805 41 - TSS region transcription start site region 27971
Tssr27972 2 173215807 to 173215842 35 - TSS region transcription start site region 27972
Tssr27973 2 173216867 to 173216883 16 - TSS region transcription start site region 27973
Tssr22049 2 173216883 to 173216898 15 + TSS region transcription start site region 22049
Tssr27974 2 173216961 to 173216987 26 - TSS region transcription start site region 27974
Tssr27975 2 173216990 to 173217013 23 - TSS region transcription start site region 27975
Tssr27976 2 173217669 to 173217715 46 - TSS region transcription start site region 27976
Tssr783 2 173218793 to 173218802 9 - TSS region transcription start site region 783
Tssr27977 2 173218818 to 173218833 15 - TSS region transcription start site region 27977
Tssr27978 2 173218856 to 173218876 20 - TSS region transcription start site region 27978
Tssr27979 2 173218879 to 173218931 52 - TSS region transcription start site region 27979
Tssr27980 2 173218961 to 173218975 14 - TSS region transcription start site region 27980
Pmepa1 2 173224458 to 173276533 52075 - protein coding gene prostate transmembrane protein, androgen induced 1
Tssr27981 2 173247232 to 173247243 11 - TSS region transcription start site region 27981
Tssr22050 2 173265050 to 173265057 7 + TSS region transcription start site region 22050
Tssr27982 2 173265934 to 173265939 5 - TSS region transcription start site region 27982
Tssr27983 2 173269439 to 173269447 8 - TSS region transcription start site region 27983
Tssr22051 2 173273016 to 173273019 3 + TSS region transcription start site region 22051
Cpgi12842 2 173275190 to 173277030 1840 CpG island CpG island 12842
Tssr784 2 173275335 to 173275362 27 + TSS region transcription start site region 784
Tssr22052 2 173275493 to 173275504 11 + TSS region transcription start site region 22052
Tssr27984 2 173276144 to 173276184 40 - TSS region transcription start site region 27984
Tssr27985 2 173276197 to 173276208 11 - TSS region transcription start site region 27985
Tssr27986 2 173276447 to 173276452 5 - TSS region transcription start site region 27986
Tssr27987 2 173276469 to 173276499 30 - TSS region transcription start site region 27987
Tssr27988 2 173276526 to 173276544 18 - TSS region transcription start site region 27988
Tssr22053 2 173276683 to 173276711 28 + TSS region transcription start site region 22053
Pmepa1os 2 173276698 to 173278428 1730 + antisense lncRNA gene prostate transmembrane protein, androgen induced 1, opposite strand
Tssr27989 2 173276980 to 173276991 11 - TSS region transcription start site region 27989
Gm46780 2 173288383 to 173290130 1747 - lncRNA gene predicted gene, 46780
Gm36859 2 173290295 to 173291597 1302 - lncRNA gene predicted gene, 36859
Tssr785 2 173291120 to 173291133 13 - TSS region transcription start site region 785
Tssr27990 2 173291137 to 173291168 31 - TSS region transcription start site region 27990
Tssr27991 2 173291175 to 173291180 5 - TSS region transcription start site region 27991
Tssr22054 2 173291227 to 173291258 31 + TSS region transcription start site region 22054
1700039O17Rik 2 173291254 to 173291595 341 unclassified gene RIKEN cDNA 1700039O17 gene
4932434E15Rik 2 173295532 to 173298983 3451 unclassified non-coding RNA gene RIKEN cDNA 4932434E15 gene
Tssr27992 2 173305129 to 173305145 16 - TSS region transcription start site region 27992
Gm36911 2 173346809 to 173370431 23622 + lncRNA gene predicted gene, 36911
Tssr27993 2 173348901 to 173348907 6 - TSS region transcription start site region 27993
Lith12 2 173354671 to 173354817 146 QTL lithogenic gene 12
D2Mit113 2 173354671 to 173354817 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 113
D2Mit502 2 173369625 to 173369769 144 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 502
Gm29859 2 173373339 to 173377890 4551 - lncRNA gene predicted gene, 29859
Gm14642 2 173394566 to 173395720 1154 + lincRNA gene predicted gene 14642
Tssr22055 2 173407056 to 173407067 11 + TSS region transcription start site region 22055
Cpgi12843 2 173413935 to 173414105 170 CpG island CpG island 12843
Tssr27994 2 173436721 to 173436730 9 - TSS region transcription start site region 27994
Cpgi12844 2 173522546 to 173522743 197 CpG island CpG island 12844
Tssr22056 2 173522575 to 173522581 6 + TSS region transcription start site region 22056
Tssr22057 2 173522588 to 173522618 30 + TSS region transcription start site region 22057
1700021F07Rik 2 173522592 to 173528502 5910 + protein coding gene RIKEN cDNA 1700021F07 gene
Tssr22058 2 173522622 to 173522635 13 + TSS region transcription start site region 22058
Tssr22059 2 173522663 to 173522671 8 + TSS region transcription start site region 22059
Cpgi12845 2 173535364 to 173535607 243 CpG island CpG island 12845
Ankrd60 2 173568661 to 173578341 9680 - protein coding gene ankyrin repeat domain 60
Cpgi12846 2 173577789 to 173578815 1026 CpG island CpG island 12846
Tssr27995 2 173578171 to 173578180 9 - TSS region transcription start site region 27995
Tssr27996 2 173578188 to 173578199 11 - TSS region transcription start site region 27996
Tssr27997 2 173578203 to 173578211 8 - TSS region transcription start site region 27997
Tssr27998 2 173578215 to 173578278 63 - TSS region transcription start site region 27998
Tssr27999 2 173578300 to 173578334 34 - TSS region transcription start site region 27999
Ppp4r1l-ps 2 173579320 to 173659539 80219 - pseudogene protein phosphatase 4, regulatory subunit 1-like, pseudogene
Cpgi12847 2 173585310 to 173586933 1623 CpG island CpG island 12847
Cpgi12848 2 173659171 to 173660426 1255 CpG island CpG island 12848
Tssr28000 2 173659522 to 173659552 30 - TSS region transcription start site region 28000
Tssr22060 2 173659595 to 173659616 21 + TSS region transcription start site region 22060
Tssr22061 2 173659625 to 173659654 29 + TSS region transcription start site region 22061
Tssr28001 2 173659667 to 173659677 10 - TSS region transcription start site region 28001
Rab22a 2 173659765 to 173702186 42421 + protein coding gene RAB22A, member RAS oncogene family
Tssr22062 2 173659807 to 173659816 9 + TSS region transcription start site region 22062
Tssr22063 2 173659834 to 173659871 37 + TSS region transcription start site region 22063
Tssr22064 2 173660067 to 173660082 15 + TSS region transcription start site region 22064
A530082H02Rik 2 173676451 to 173679657 3206 unclassified gene RIKEN cDNA A530082H02 gene
Tssr22065 2 173685632 to 173685634 2 + TSS region transcription start site region 22065
Mir6340 2 173701030 to 173701148 118 - miRNA gene microRNA 6340
1700010B08Rik 2 173719415 to 173722086 2671 + protein coding gene RIKEN cDNA 1700010B08 gene
Tssr22066 2 173719426 to 173719437 11 + TSS region transcription start site region 22066
Tssr786 2 173719447 to 173719456 9 + TSS region transcription start site region 786
Tssr22067 2 173719467 to 173719502 35 + TSS region transcription start site region 22067
Cpgi12849 2 173737312 to 173738079 767 CpG island CpG island 12849
Tssr22068 2 173737478 to 173737490 12 + TSS region transcription start site region 22068
Tssr22069 2 173737492 to 173737503 11 + TSS region transcription start site region 22069
Tssr22070 2 173737555 to 173737601 46 + TSS region transcription start site region 22070
Vapb 2 173737571 to 173784336 46765 + protein coding gene vesicle-associated membrane protein, associated protein B and C
Tssr22071 2 173737602 to 173737632 30 + TSS region transcription start site region 22071
Tssr22072 2 173737639 to 173737646 7 + TSS region transcription start site region 22072