Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:172945131-173055178

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr21977 2 172949735 to 172949742 7 + TSS region transcription start site region 21977
Tssr780 2 172972503 to 172972504 1 + TSS region transcription start site region 780
Tssr21978 2 172977553 to 172977558 5 + TSS region transcription start site region 21978
Tssr21979 2 172977625 to 172977632 7 + TSS region transcription start site region 21979
Tssr21980 2 172977653 to 172977676 23 + TSS region transcription start site region 21980
Tssr21981 2 172977682 to 172977695 13 + TSS region transcription start site region 21981
Spo11 2 172977700 to 172993576 15876 + protein coding gene SPO11 meiotic protein covalently bound to DSB
Tssr21982 2 172977700 to 172977711 11 + TSS region transcription start site region 21982
Tssr21983 2 172977731 to 172977751 20 + TSS region transcription start site region 21983
Tssr21984 2 172977758 to 172977789 31 + TSS region transcription start site region 21984
Tssr21985 2 172977852 to 172977863 11 + TSS region transcription start site region 21985
Tssr21986 2 172977875 to 172977901 26 + TSS region transcription start site region 21986
Tssr21987 2 172977908 to 172977922 14 + TSS region transcription start site region 21987
Tssr27958 2 172978341 to 172978381 40 - TSS region transcription start site region 27958
Cpgi12835 2 172979767 to 172980176 409 CpG island CpG island 12835
Tssr21988 2 172979827 to 172979879 52 + TSS region transcription start site region 21988
D2Mit528.2 2 172982035 to 172982146 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 528.2
Cfld1 2 172982127 to 172982222 95 QTL cystic fibrosis lung disease 1
D2Mit528 2 172982127 to 172982222 95 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 528
Tssr21989 2 172992717 to 172992719 2 + TSS region transcription start site region 21989
Cpgi12836 2 172999715 to 173000981 1266 CpG island CpG island 12836
Tssr21990 2 173000114 to 173000125 11 + TSS region transcription start site region 21990
Rae1 2 173000117 to 173015739 15622 + protein coding gene ribonucleic acid export 1
Tssr21991 2 173000131 to 173000178 47 + TSS region transcription start site region 21991
Tssr21992 2 173006092 to 173006099 7 + TSS region transcription start site region 21992
Cpgi12837 2 173019658 to 173020253 595 CpG island CpG island 12837
Cpgi12838 2 173021644 to 173022879 1235 CpG island CpG island 12838
Tssr21993 2 173021895 to 173021906 11 + TSS region transcription start site region 21993
Rbm38 2 173021902 to 173034734 12832 + protein coding gene RNA binding motif protein 38
Tssr21994 2 173021922 to 173021939 17 + TSS region transcription start site region 21994
Tssr21995 2 173022360 to 173022388 28 + TSS region transcription start site region 21995
Gm20490 2 173022503 to 173022956 453 - unclassified non-coding RNA gene predicted gene 20490
Tssr21996 2 173023044 to 173023060 16 + TSS region transcription start site region 21996
Tssr27959 2 173023359 to 173023381 22 - TSS region transcription start site region 27959
Gm14453 2 173025685 to 173034580 8895 - antisense lncRNA gene predicted gene 14453
Tssr21997 2 173033497 to 173033519 22 + TSS region transcription start site region 21997
Tssr27960 2 173033529 to 173033571 42 - TSS region transcription start site region 27960
Tssr27961 2 173033609 to 173033656 47 - TSS region transcription start site region 27961
Tssr21998 2 173034072 to 173034094 22 + TSS region transcription start site region 21998
Gm36337 2 173049684 to 173051799 2115 - lncRNA gene predicted gene, 36337