Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:172357554-172589316

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Skts13 2 168781613 to 172563406 3781793 QTL skin tumor sucseptibility 13
Aurka 2 172356190 to 172370535 14345 - protein coding gene aurora kinase A
Cpgi12820 2 172370109 to 172371381 1272 CpG island CpG island 12820
Tssr27940 2 172370514 to 172370540 26 - TSS region transcription start site region 27940
Tssr21948 2 172370645 to 172370656 11 + TSS region transcription start site region 21948
Tssr21949 2 172370658 to 172370744 86 + TSS region transcription start site region 21949
Cstf1 2 172370686 to 172382449 11763 + protein coding gene cleavage stimulation factor, 3' pre-RNA, subunit 1
Tssr27941 2 172370878 to 172370922 44 - TSS region transcription start site region 27941
Tssr21950 2 172370939 to 172370985 46 + TSS region transcription start site region 21950
Cass4 2 172393794 to 172433757 39963 + protein coding gene Cas scaffolding protein family member 4
Tssr21951 2 172393802 to 172393829 27 + TSS region transcription start site region 21951
Tssr21952 2 172393948 to 172393964 16 + TSS region transcription start site region 21952
D2Mit147 2 172394708 to 172394821 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 147
Tssr27942 2 172396010 to 172396050 40 - TSS region transcription start site region 27942
Tssr27943 2 172398060 to 172398065 5 - TSS region transcription start site region 27943
Tssr778 2 172398207 to 172398229 22 + TSS region transcription start site region 778
Tssr779 2 172399435 to 172399443 8 + TSS region transcription start site region 779
Tssr27944 2 172401111 to 172401123 12 - TSS region transcription start site region 27944
Tssr27945 2 172401124 to 172401136 12 - TSS region transcription start site region 27945
Gm14455 2 172425804 to 172440560 14756 - antisense lncRNA gene predicted gene 14455
Cpgi12821 2 172440258 to 172441010 752 CpG island CpG island 12821
Tssr27946 2 172440516 to 172440529 13 - TSS region transcription start site region 27946
Tssr21953 2 172440565 to 172440630 65 + TSS region transcription start site region 21953
Rtf2 2 172440578 to 172469899 29321 + protein coding gene replication termination factor 2
Tssr21954 2 172440650 to 172440657 7 + TSS region transcription start site region 21954
Tssr21955 2 172442190 to 172442197 7 + TSS region transcription start site region 21955
Gcnt7 2 172450313 to 172458596 8283 - protein coding gene glucosaminyl (N-acetyl) transferase family member 7
Tssr21956 2 172455489 to 172455496 7 + TSS region transcription start site region 21956
Tssr21957 2 172461364 to 172461394 30 + TSS region transcription start site region 21957
Tssr27947 2 172463251 to 172463297 46 - TSS region transcription start site region 27947
Tssr21958 2 172472512 to 172472535 23 + TSS region transcription start site region 21958
Tssr21959 2 172472538 to 172472553 15 + TSS region transcription start site region 21959
Fam209 2 172472554 to 172474316 1762 + protein coding gene family with sequence similarity 209
Tssr21960 2 172472555 to 172472567 12 + TSS region transcription start site region 21960
Gm40009 2 172494289 to 172514885 20596 + lncRNA gene predicted gene, 40009
Gm14303 2 172509521 to 172509691 170 - pseudogene predicted gene 14303
Gm35864 2 172518551 to 172519185 634 - lncRNA gene predicted gene, 35864
Cpgi12822 2 172545663 to 172546115 452 CpG island CpG island 12822
Tssr21961 2 172545673 to 172545685 12 + TSS region transcription start site region 21961
Tssr21962 2 172545712 to 172545728 16 + TSS region transcription start site region 21962
Tssr21963 2 172546193 to 172546199 6 + TSS region transcription start site region 21963
Tssr21964 2 172546213 to 172546224 11 + TSS region transcription start site region 21964
Tssr21965 2 172546229 to 172546232 3 + TSS region transcription start site region 21965
Cpgi12823 2 172546625 to 172547951 1326 CpG island CpG island 12823
Cpgi12824 2 172548687 to 172549002 315 CpG island CpG island 12824
Cpgi12825 2 172549259 to 172551891 2632 CpG island CpG island 12825
Tssr21966 2 172549581 to 172549605 24 + TSS region transcription start site region 21966
Tfap2c 2 172549593 to 172558622 9029 + protein coding gene transcription factor AP-2, gamma
Tssr21967 2 172549636 to 172549649 13 + TSS region transcription start site region 21967
Tssr21968 2 172550761 to 172550767 6 + TSS region transcription start site region 21968
Tssr27948 2 172550935 to 172550940 5 - TSS region transcription start site region 27948
Tssr21969 2 172551028 to 172551043 15 + TSS region transcription start site region 21969
Tssr21970 2 172551503 to 172551518 15 + TSS region transcription start site region 21970
Tssr21971 2 172551522 to 172551535 13 + TSS region transcription start site region 21971
D2Mit198 2 172563271 to 172563406 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 198
Gm35982 2 172573147 to 172575695 2548 - lncRNA gene predicted gene, 35982
Gm36038 2 172577116 to 172607961 30845 + lncRNA gene predicted gene, 36038
Tssr21972 2 172577636 to 172577662 26 + TSS region transcription start site region 21972
Tssr21973 2 172588759 to 172588768 9 + TSS region transcription start site region 21973