Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:171924827-174034879

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340 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rvfs1 2 135590624 to 173607823 38017199 QTL Rift Valley fever susceptibility 1
Skts13 2 168781613 to 172563406 3781793 QTL skin tumor sucseptibility 13
D2Ertd239e 2 171938889 to 171939118 229 DNA segment DNA segment, Chr 2, ERATO Doi 239, expressed
D2Mit501 2 171951588 to 171951678 90 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 501
1700028P15Rik 2 171956879 to 171962799 5920 - lncRNA gene RIKEN cDNA 1700028P15 gene
Tssr27935 2 171962814 to 171962828 14 - TSS region transcription start site region 27935
Gm40005 2 171962901 to 171965622 2721 + lncRNA gene predicted gene, 40005
Gm14272 2 171988195 to 171989195 1000 - lincRNA gene predicted gene 14272
Gm14641 2 171995941 to 172003995 8054 - lincRNA gene predicted gene 14641
Tssr21939 2 172006931 to 172006964 33 + TSS region transcription start site region 21939
Cbln4 2 172036336 to 172043466 7130 - protein coding gene cerebellin 4 precursor protein
Cpgi12814 2 172041821 to 172043612 1791 CpG island CpG island 12814
Tssr27936 2 172043046 to 172043061 15 - TSS region transcription start site region 27936
Tssr27937 2 172043129 to 172043148 19 - TSS region transcription start site region 27937
Gm14271 2 172046526 to 172050134 3608 + antisense lncRNA gene predicted gene 14271
Tssr777 2 172100539 to 172100549 10 + TSS region transcription start site region 777
Tssr21940 2 172100611 to 172100627 16 + TSS region transcription start site region 21940
Gm14274 2 172100621 to 172101235 614 + pseudogene predicted gene 14274
Cpgi12815 2 172100641 to 172100825 184 CpG island CpG island 12815
Gm40006 2 172116575 to 172117195 620 + lncRNA gene predicted gene, 40006
Gm35719 2 172154601 to 172156413 1812 - lncRNA gene predicted gene, 35719
Gm44301 2 172176782 to 172176924 142 + miRNA gene predicted gene, 44301
Tssr27938 2 172225738 to 172225739 1 - TSS region transcription start site region 27938
Cpgi12816 2 172248240 to 172248546 306 CpG island CpG island 12816
Mc3r 2 172248492 to 172251114 2622 + protein coding gene melanocortin 3 receptor
Cpgi12817 2 172249158 to 172249980 822 CpG island CpG island 12817
Gm40007 2 172263129 to 172276213 13084 - lncRNA gene predicted gene, 40007
Gm40008 2 172285473 to 172297753 12280 - lncRNA gene predicted gene, 40008
Tssr21941 2 172287977 to 172288014 37 + TSS region transcription start site region 21941
Tssr21942 2 172288120 to 172288137 17 + TSS region transcription start site region 21942
Gm14275 2 172288133 to 172290520 2387 + lincRNA gene predicted gene 14275
Tssr21943 2 172288145 to 172288159 14 + TSS region transcription start site region 21943
Gm14273 2 172324334 to 172338663 14329 + antisense lncRNA gene predicted gene 14273
Cpgi12818 2 172329300 to 172329536 236 CpG island CpG island 12818
Cpgi12819 2 172345315 to 172346383 1068 CpG island CpG island 12819
Fam210b 2 172345570 to 172355749 10179 + protein coding gene family with sequence similarity 210, member B
Tssr21944 2 172345579 to 172345590 11 + TSS region transcription start site region 21944
Tssr21945 2 172345595 to 172345626 31 + TSS region transcription start site region 21945
Tssr21946 2 172345628 to 172345647 19 + TSS region transcription start site region 21946
Tssr27939 2 172345670 to 172345683 13 - TSS region transcription start site region 27939
Tssr21947 2 172353289 to 172353296 7 + TSS region transcription start site region 21947
Aurka 2 172356190 to 172370535 14345 - protein coding gene aurora kinase A
Cpgi12820 2 172370109 to 172371381 1272 CpG island CpG island 12820
Tssr27940 2 172370514 to 172370540 26 - TSS region transcription start site region 27940
Tssr21948 2 172370645 to 172370656 11 + TSS region transcription start site region 21948
Tssr21949 2 172370658 to 172370744 86 + TSS region transcription start site region 21949
Cstf1 2 172370686 to 172382449 11763 + protein coding gene cleavage stimulation factor, 3' pre-RNA, subunit 1
Tssr27941 2 172370878 to 172370922 44 - TSS region transcription start site region 27941
Tssr21950 2 172370939 to 172370985 46 + TSS region transcription start site region 21950
Cass4 2 172393794 to 172433757 39963 + protein coding gene Cas scaffolding protein family member 4
Tssr21951 2 172393802 to 172393829 27 + TSS region transcription start site region 21951
Tssr21952 2 172393948 to 172393964 16 + TSS region transcription start site region 21952
D2Mit147 2 172394708 to 172394821 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 147
Tssr27942 2 172396010 to 172396050 40 - TSS region transcription start site region 27942
Tssr27943 2 172398060 to 172398065 5 - TSS region transcription start site region 27943
Tssr778 2 172398207 to 172398229 22 + TSS region transcription start site region 778
Tssr779 2 172399435 to 172399443 8 + TSS region transcription start site region 779
Tssr27944 2 172401111 to 172401123 12 - TSS region transcription start site region 27944
Tssr27945 2 172401124 to 172401136 12 - TSS region transcription start site region 27945
Gm14455 2 172425804 to 172440560 14756 - antisense lncRNA gene predicted gene 14455
Cpgi12821 2 172440258 to 172441010 752 CpG island CpG island 12821
Tssr27946 2 172440516 to 172440529 13 - TSS region transcription start site region 27946
Tssr21953 2 172440565 to 172440630 65 + TSS region transcription start site region 21953
Rtf2 2 172440578 to 172469899 29321 + protein coding gene replication termination factor 2
Tssr21954 2 172440650 to 172440657 7 + TSS region transcription start site region 21954
Tssr21955 2 172442190 to 172442197 7 + TSS region transcription start site region 21955
Gcnt7 2 172450313 to 172458596 8283 - protein coding gene glucosaminyl (N-acetyl) transferase family member 7
Tssr21956 2 172455489 to 172455496 7 + TSS region transcription start site region 21956
Tssr21957 2 172461364 to 172461394 30 + TSS region transcription start site region 21957
Tssr27947 2 172463251 to 172463297 46 - TSS region transcription start site region 27947
Tssr21958 2 172472512 to 172472535 23 + TSS region transcription start site region 21958
Tssr21959 2 172472538 to 172472553 15 + TSS region transcription start site region 21959
Fam209 2 172472554 to 172474316 1762 + protein coding gene family with sequence similarity 209
Tssr21960 2 172472555 to 172472567 12 + TSS region transcription start site region 21960
Gm40009 2 172494289 to 172514885 20596 + lncRNA gene predicted gene, 40009
Gm14303 2 172509521 to 172509691 170 - pseudogene predicted gene 14303
Gm35864 2 172518551 to 172519185 634 - lncRNA gene predicted gene, 35864
Cpgi12822 2 172545663 to 172546115 452 CpG island CpG island 12822
Tssr21961 2 172545673 to 172545685 12 + TSS region transcription start site region 21961
Tssr21962 2 172545712 to 172545728 16 + TSS region transcription start site region 21962
Tssr21963 2 172546193 to 172546199 6 + TSS region transcription start site region 21963
Tssr21964 2 172546213 to 172546224 11 + TSS region transcription start site region 21964
Tssr21965 2 172546229 to 172546232 3 + TSS region transcription start site region 21965
Cpgi12823 2 172546625 to 172547951 1326 CpG island CpG island 12823
Cpgi12824 2 172548687 to 172549002 315 CpG island CpG island 12824
Cpgi12825 2 172549259 to 172551891 2632 CpG island CpG island 12825
Tssr21966 2 172549581 to 172549605 24 + TSS region transcription start site region 21966
Tfap2c 2 172549593 to 172558622 9029 + protein coding gene transcription factor AP-2, gamma
Tssr21967 2 172549636 to 172549649 13 + TSS region transcription start site region 21967
Tssr21968 2 172550761 to 172550767 6 + TSS region transcription start site region 21968
Tssr27948 2 172550935 to 172550940 5 - TSS region transcription start site region 27948
Tssr21969 2 172551028 to 172551043 15 + TSS region transcription start site region 21969
Tssr21970 2 172551503 to 172551518 15 + TSS region transcription start site region 21970
Tssr21971 2 172551522 to 172551535 13 + TSS region transcription start site region 21971
D2Mit198 2 172563271 to 172563406 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 198
Gm35982 2 172573147 to 172575695 2548 - lncRNA gene predicted gene, 35982
Gm36038 2 172577116 to 172607961 30845 + lncRNA gene predicted gene, 36038
Tssr21972 2 172577636 to 172577662 26 + TSS region transcription start site region 21972
Tssr21973 2 172588759 to 172588768 9 + TSS region transcription start site region 21973
Tssr21974 2 172643939 to 172643953 14 + TSS region transcription start site region 21974
Tssr21975 2 172646641 to 172646654 13 + TSS region transcription start site region 21975
Gm36156 2 172663816 to 172668447 4631 + lncRNA gene predicted gene, 36156
D2Mit173 2 172701876 to 172702152 276 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 173
D2Mit173.1 2 172701922 to 172702036 114 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 173.1
Cpgi12826 2 172728150 to 172728988 838 CpG island CpG island 12826
Cpgi12827 2 172731410 to 172731611 201 CpG island CpG island 12827
Cpgi12828 2 172739496 to 172739679 183 CpG island CpG island 12828
Cpgi12829 2 172787613 to 172787993 380 CpG island CpG island 12829
Tssr27949 2 172806670 to 172806677 7 - TSS region transcription start site region 27949
Tssr27950 2 172806825 to 172806832 7 - TSS region transcription start site region 27950
Cpgi12830 2 172825046 to 172825381 335 CpG island CpG island 12830
Cpgi12831 2 172845905 to 172846260 355 CpG island CpG island 12831
Gm36254 2 172848625 to 172864252 15627 - lncRNA gene predicted gene, 36254
1700055K11Rik 2 172859957 to 172863123 3166 + lncRNA gene RIKEN cDNA 1700055K11 gene
Cpgi12832 2 172862497 to 172863713 1216 CpG island CpG island 12832
Gm22773 2 172864264 to 172864341 77 - miRNA gene predicted gene, 22773
Bmp7 2 172868012 to 172940321 72309 - protein coding gene bone morphogenetic protein 7
Tssr27951 2 172869438 to 172869478 40 - TSS region transcription start site region 27951
Tssr27952 2 172901972 to 172901986 14 - TSS region transcription start site region 27952
Gm40010 2 172930521 to 172939645 9124 - lncRNA gene predicted gene, 40010
Cpgi12833 2 172934095 to 172934424 329 CpG island CpG island 12833
Cpgi12834 2 172938604 to 172941073 2469 CpG island CpG island 12834
Tssr21976 2 172938779 to 172938808 29 + TSS region transcription start site region 21976
Tssr27953 2 172940013 to 172940049 36 - TSS region transcription start site region 27953
Tssr27954 2 172940052 to 172940098 46 - TSS region transcription start site region 27954
Tssr27955 2 172940299 to 172940349 50 - TSS region transcription start site region 27955
Tssr27956 2 172940395 to 172940406 11 - TSS region transcription start site region 27956
Tssr27957 2 172940561 to 172940617 56 - TSS region transcription start site region 27957
Tssr21977 2 172949735 to 172949742 7 + TSS region transcription start site region 21977
Tssr780 2 172972503 to 172972504 1 + TSS region transcription start site region 780
Tssr21978 2 172977553 to 172977558 5 + TSS region transcription start site region 21978
Tssr21979 2 172977625 to 172977632 7 + TSS region transcription start site region 21979
Tssr21980 2 172977653 to 172977676 23 + TSS region transcription start site region 21980
Tssr21981 2 172977682 to 172977695 13 + TSS region transcription start site region 21981
Tssr21982 2 172977700 to 172977711 11 + TSS region transcription start site region 21982
Spo11 2 172977700 to 172993576 15876 + protein coding gene SPO11 meiotic protein covalently bound to DSB
Tssr21983 2 172977731 to 172977751 20 + TSS region transcription start site region 21983
Tssr21984 2 172977758 to 172977789 31 + TSS region transcription start site region 21984
Tssr21985 2 172977852 to 172977863 11 + TSS region transcription start site region 21985
Tssr21986 2 172977875 to 172977901 26 + TSS region transcription start site region 21986
Tssr21987 2 172977908 to 172977922 14 + TSS region transcription start site region 21987
Tssr27958 2 172978341 to 172978381 40 - TSS region transcription start site region 27958
Cpgi12835 2 172979767 to 172980176 409 CpG island CpG island 12835
Tssr21988 2 172979827 to 172979879 52 + TSS region transcription start site region 21988
D2Mit528.2 2 172982035 to 172982146 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 528.2
Cfld1 2 172982127 to 172982222 95 QTL cystic fibrosis lung disease 1
D2Mit528 2 172982127 to 172982222 95 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 528
Tssr21989 2 172992717 to 172992719 2 + TSS region transcription start site region 21989
Cpgi12836 2 172999715 to 173000981 1266 CpG island CpG island 12836
Tssr21990 2 173000114 to 173000125 11 + TSS region transcription start site region 21990
Rae1 2 173000117 to 173015739 15622 + protein coding gene ribonucleic acid export 1
Tssr21991 2 173000131 to 173000178 47 + TSS region transcription start site region 21991
Tssr21992 2 173006092 to 173006099 7 + TSS region transcription start site region 21992
Cpgi12837 2 173019658 to 173020253 595 CpG island CpG island 12837
Cpgi12838 2 173021644 to 173022879 1235 CpG island CpG island 12838
Tssr21993 2 173021895 to 173021906 11 + TSS region transcription start site region 21993
Rbm38 2 173021902 to 173034734 12832 + protein coding gene RNA binding motif protein 38
Tssr21994 2 173021922 to 173021939 17 + TSS region transcription start site region 21994
Tssr21995 2 173022360 to 173022388 28 + TSS region transcription start site region 21995
Gm20490 2 173022503 to 173022956 453 - unclassified non-coding RNA gene predicted gene 20490
Tssr21996 2 173023044 to 173023060 16 + TSS region transcription start site region 21996
Tssr27959 2 173023359 to 173023381 22 - TSS region transcription start site region 27959
Gm14453 2 173025685 to 173034580 8895 - antisense lncRNA gene predicted gene 14453
Tssr21997 2 173033497 to 173033519 22 + TSS region transcription start site region 21997
Tssr27960 2 173033529 to 173033571 42 - TSS region transcription start site region 27960
Tssr27961 2 173033609 to 173033656 47 - TSS region transcription start site region 27961
Tssr21998 2 173034072 to 173034094 22 + TSS region transcription start site region 21998
Gm36337 2 173049684 to 173051799 2115 - lncRNA gene predicted gene, 36337
Gm36462 2 173060059 to 173061877 1818 - lncRNA gene predicted gene, 36462
Tssr21999 2 173061695 to 173061730 35 + TSS region transcription start site region 21999
Gm36417 2 173061712 to 173065582 3870 + lncRNA gene predicted gene, 36417
Tssr22000 2 173061745 to 173061756 11 + TSS region transcription start site region 22000
Tssr27962 2 173062102 to 173062128 26 - TSS region transcription start site region 27962
Tssr22001 2 173062278 to 173062289 11 + TSS region transcription start site region 22001
Tssr22002 2 173063539 to 173063546 7 + TSS region transcription start site region 22002
Tssr22003 2 173065302 to 173065307 5 + TSS region transcription start site region 22003
Tssr22004 2 173065978 to 173065980 2 + TSS region transcription start site region 22004
Tssr22005 2 173073171 to 173073175 4 + TSS region transcription start site region 22005
Tssr22006 2 173073189 to 173073202 13 + TSS region transcription start site region 22006
Tssr22007 2 173073206 to 173073218 12 + TSS region transcription start site region 22007
Tssr22008 2 173073221 to 173073230 9 + TSS region transcription start site region 22008
Tssr22009 2 173073239 to 173073254 15 + TSS region transcription start site region 22009
Tssr781 2 173073276 to 173073283 7 + TSS region transcription start site region 781
Tssr22010 2 173073287 to 173073298 11 + TSS region transcription start site region 22010
Tssr22011 2 173082773 to 173082780 7 + TSS region transcription start site region 22011
Gm40011 2 173082780 to 173138200 55420 + protein coding gene predicted gene, 40011
Tssr22012 2 173082800 to 173082810 10 + TSS region transcription start site region 22012
Tssr22013 2 173089901 to 173089904 3 + TSS region transcription start site region 22013
Ctcfl 2 173093609 to 173119525 25916 - protein coding gene CCCTC-binding factor (zinc finger protein)-like
Tssr22014 2 173110796 to 173110817 21 + TSS region transcription start site region 22014
Tssr22015 2 173110820 to 173110834 14 + TSS region transcription start site region 22015
Tssr22016 2 173110848 to 173110855 7 + TSS region transcription start site region 22016
Cpgi12839 2 173118446 to 173118602 156 CpG island CpG island 12839
Cpgi12840 2 173119072 to 173119430 358 CpG island CpG island 12840
Tssr27963 2 173119402 to 173119415 13 - TSS region transcription start site region 27963
Ctcflos 2 173124749 to 173133204 8455 + antisense lncRNA gene CCCTC-binding factor (zinc finger protein)-like, opposite strand
Tssr22017 2 173137105 to 173137126 21 + TSS region transcription start site region 22017
Gm36691 2 173143207 to 173148396 5189 - lncRNA gene predicted gene, 36691
Gm36749 2 173143571 to 173146488 2917 + lncRNA gene predicted gene, 36749
Tssr27964 2 173148043 to 173148060 17 - TSS region transcription start site region 27964