Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:170166807-171444769

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr21919 2 170176032 to 170176069 37 + TSS region transcription start site region 21919
Gm34403 2 170177103 to 170186188 9085 - lncRNA gene predicted gene, 34403
Cpgi12800 2 170184372 to 170184739 367 CpG island CpG island 12800
Tssr21920 2 170184845 to 170184856 11 + TSS region transcription start site region 21920
Gm17619 2 170192449 to 170194053 1604 - lincRNA gene predicted gene, 17619
Tssr27915 2 170193453 to 170193464 11 - TSS region transcription start site region 27915
Tssr27916 2 170194033 to 170194064 31 - TSS region transcription start site region 27916
Tssr27917 2 170195850 to 170195873 23 - TSS region transcription start site region 27917
Tssr21921 2 170201977 to 170201999 22 + TSS region transcription start site region 21921
Tssr27918 2 170252793 to 170252807 14 - TSS region transcription start site region 27918
Tssr21922 2 170284960 to 170284980 20 + TSS region transcription start site region 21922
Gm14270 2 170285035 to 170285880 845 + pseudogene predicted gene 14270
Tssr21923 2 170285328 to 170285346 18 + TSS region transcription start site region 21923
Cpgi12801 2 170287386 to 170287614 228 CpG island CpG island 12801
Tssr21924 2 170316478 to 170316486 8 + TSS region transcription start site region 21924
Tssr21925 2 170316549 to 170316560 11 + TSS region transcription start site region 21925
Gm34542 2 170317716 to 170323401 5685 + lncRNA gene predicted gene, 34542
9430096G21Rik 2 170318641 to 170319231 590 unclassified gene RIKEN cDNA 9430096G21 gene
Cpgi12802 2 170319150 to 170319496 346 CpG island CpG island 12802
Cpgi12803 2 170324094 to 170324353 259 CpG island CpG island 12803
Gm39999 2 170328500 to 170337583 9083 - lncRNA gene predicted gene, 39999
Tssr21926 2 170336704 to 170336741 37 + TSS region transcription start site region 21926
Bcas1 2 170346991 to 170427845 80854 - protein coding gene breast carcinoma amplified sequence 1
Tssr27919 2 170349241 to 170349243 2 - TSS region transcription start site region 27919
Tssr21927 2 170349293 to 170349331 38 + TSS region transcription start site region 21927
Cpgi12804 2 170356205 to 170356395 190 CpG island CpG island 12804
Bcas1os2 2 170356361 to 170380435 24074 + antisense lncRNA gene breast carcinoma amplified sequence 1, opposite strand 2
Tssr27920 2 170357106 to 170357120 14 - TSS region transcription start site region 27920
Tssr27921 2 170357122 to 170357129 7 - TSS region transcription start site region 27921
Tssr21928 2 170375620 to 170375631 11 + TSS region transcription start site region 21928
Tssr27922 2 170387940 to 170387969 29 - TSS region transcription start site region 27922
Tssr27923 2 170387971 to 170388017 46 - TSS region transcription start site region 27923
Bcas1os1 2 170405181 to 170407175 1994 + antisense lncRNA gene breast carcinoma amplified sequence 1, opposite strand 1
Tssr27924 2 170406501 to 170406518 17 - TSS region transcription start site region 27924
Tssr27925 2 170427837 to 170427852 15 - TSS region transcription start site region 27925
Tssr27926 2 170427853 to 170427862 9 - TSS region transcription start site region 27926
Gm14269 2 170463514 to 170463819 305 - pseudogene predicted gene 14269
Tssr27927 2 170463879 to 170463896 17 - TSS region transcription start site region 27927
Gm34608 2 170465102 to 170470003 4901 - lncRNA gene predicted gene, 34608
Tssr27928 2 170470011 to 170470012 1 - TSS region transcription start site region 27928
Tssr27929 2 170470699 to 170470709 10 - TSS region transcription start site region 27929
Tssr27930 2 170470711 to 170470720 9 - TSS region transcription start site region 27930
Tssr21929 2 170470847 to 170470854 7 + TSS region transcription start site region 21929
Gm40000 2 170481602 to 170482474 872 + lncRNA gene predicted gene, 40000
Cyp24a1 2 170482957 to 170497145 14188 - protein coding gene cytochrome P450, family 24, subfamily a, polypeptide 1
Cpgi12805 2 170495410 to 170495570 160 CpG island CpG island 12805
Cpgi12806 2 170496050 to 170497665 1615 CpG island CpG island 12806
Pfdn4 2 170496428 to 170519070 22642 + protein coding gene prefoldin 4
Tssr27931 2 170497141 to 170497147 6 - TSS region transcription start site region 27931
Gm16796 2 170499357 to 170511927 12570 - antisense lncRNA gene predicted gene, 16796
Cpgi12807 2 170511119 to 170512123 1004 CpG island CpG island 12807
Tssr21930 2 170511418 to 170511451 33 + TSS region transcription start site region 21930
Tssr21931 2 170526733 to 170526774 41 + TSS region transcription start site region 21931
Tssr21932 2 170527600 to 170527619 19 + TSS region transcription start site region 21932
Cpgi12808 2 170528178 to 170528400 222 CpG island CpG island 12808
Gm40001 2 170557658 to 170564865 7207 + lncRNA gene predicted gene, 40001
Gm14637 2 170576054 to 170578424 2370 + antisense lncRNA gene predicted gene 14637
4930470P17Rik 2 170579418 to 170602017 22599 - protein coding gene RIKEN cDNA 4930470P17 gene
Tssr27932 2 170591650 to 170591655 5 - TSS region transcription start site region 27932
Gm40002 2 170638674 to 170653594 14920 + lncRNA gene predicted gene, 40002
Gm14264 2 170652434 to 170662465 10031 - lincRNA gene predicted gene 14264
Gm40003 2 170671103 to 170673838 2735 - lncRNA gene predicted gene, 40003
Tssr27933 2 170673800 to 170673814 14 - TSS region transcription start site region 27933
Cpgi12809 2 170695404 to 170695794 390 CpG island CpG island 12809
Gm34981 2 170712805 to 170725924 13119 + lncRNA gene predicted gene, 34981
Cpgi12810 2 170731620 to 170732502 882 CpG island CpG island 12810
Dok5 2 170731807 to 170879769 147962 + protein coding gene docking protein 5
Tssr21933 2 170731877 to 170731920 43 + TSS region transcription start site region 21933
Tssr21934 2 170731927 to 170731951 24 + TSS region transcription start site region 21934
Tssr21935 2 170731969 to 170731988 19 + TSS region transcription start site region 21935
D2Mit344 2 170758000 to 170758207 207 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 344
Cpgi12811 2 170761099 to 170761493 394 CpG island CpG island 12811
Gm35033 2 170774155 to 170776838 2683 - lncRNA gene predicted gene, 35033
Tssr27934 2 170775720 to 170775739 19 - TSS region transcription start site region 27934
Cpgi12812 2 170788453 to 170788653 200 CpG island CpG island 12812
D2Jcs38 2 170941784 to 170942087 303 DNA segment DNA segment, Chr 2, John C. Schimenti 38
Gm14263 2 170954079 to 170954824 745 - pseudogene predicted gene 14263
D2Mit25 2 171132612 to 171132724 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 25
Tssr21936 2 171193222 to 171193229 7 + TSS region transcription start site region 21936
Gm14266 2 171193269 to 171271350 78081 + lincRNA gene predicted gene 14266
Cpgi12813 2 171194803 to 171195151 348 CpG island CpG island 12813
Gm46779 2 171215497 to 171217947 2450 - lncRNA gene predicted gene, 46779
Gm14640 2 171215499 to 171217947 2448 + lincRNA gene predicted gene 14640
1700007M16Rik 2 171234009 to 171238991 4982 + lincRNA gene RIKEN cDNA 1700007M16 gene
Tssr21937 2 171253272 to 171253295 23 + TSS region transcription start site region 21937
Gm26489 2 171306168 to 171306431 263 - snoRNA gene predicted gene, 26489
Gm35434 2 171356240 to 171363723 7483 + lncRNA gene predicted gene, 35434