Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:169947882-179283998

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869 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bglu1 2 118112449 to 174483070 56370621 QTL blood glucose level 1
Rvfs1 2 135590624 to 173607823 38017199 QTL Rift Valley fever susceptibility 1
Bhr1 2 142751556 to 178800659 36049103 QTL bronchial hyperresponsiveness 1
Scgq3 2 151867353 to 174547331 22679978 QTL spontaneous crescentic glomerulonephritis QTL 3
Nidd2k 2 158236417 to 178800659 20564242 QTL Nidd2 on KK-A
Pwbwq2 2 160769245 to 169952882 9183637 QTL pre-weaning body weight QTL 2
Pwgrq3 2 160769245 to 169952882 9183637 QTL pre-weaning growth rate QTL 3
Tailq4 2 162895006 to 178800659 15905653 QTL tail length QTL 4
Epfq2 2 162895006 to 178800659 15905653 QTL epididymal fat pad weight QTL 2
Skts13 2 168781613 to 172563406 3781793 QTL skin tumor sucseptibility 13
Tshz2 2 169633013 to 170071816 438803 + protein coding gene teashirt zinc finger family member 2
Tssr776 2 169949468 to 169949472 4 + TSS region transcription start site region 776
Pwbwq3 2 169952882 to 179278998 9326116 QTL pre-weaning body weight QTL 3
AY702102 2 169962015 to 169963187 1172 - lncRNA gene cDNA sequence AY702102
Tssr27899 2 169963075 to 169963082 7 - TSS region transcription start site region 27899
Tssr27900 2 169963169 to 169963201 32 - TSS region transcription start site region 27900
Tssr27901 2 169970576 to 169970585 9 - TSS region transcription start site region 27901
Tssr21913 2 169970790 to 169970802 12 + TSS region transcription start site region 21913
Tssr21914 2 169970807 to 169970819 12 + TSS region transcription start site region 21914
A630075F10Rik 2 170061240 to 170070671 9431 - lincRNA gene RIKEN cDNA A630075F10 gene
D2Mit415 2 170092356 to 170092444 88 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 415
Cpgi12796 2 170094330 to 170094830 500 CpG island CpG island 12796
Zfp217 2 170108643 to 170148103 39460 - protein coding gene zinc finger protein 217
Tssr27902 2 170108908 to 170108917 9 - TSS region transcription start site region 27902
D2Mit112 2 170116443 to 170116570 127 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 112
Tssr27903 2 170122077 to 170122084 7 - TSS region transcription start site region 27903
Cpgi12797 2 170130226 to 170131680 1454 CpG island CpG island 12797
Tssr27904 2 170131156 to 170131184 28 - TSS region transcription start site region 27904
Tssr21915 2 170131344 to 170131362 18 + TSS region transcription start site region 21915
Tssr27905 2 170132037 to 170132051 14 - TSS region transcription start site region 27905
Tssr21916 2 170132379 to 170132386 7 + TSS region transcription start site region 21916
Cpgi12798 2 170133353 to 170133857 504 CpG island CpG island 12798
Tssr27906 2 170133542 to 170133565 23 - TSS region transcription start site region 27906
Tssr21917 2 170133659 to 170133679 20 + TSS region transcription start site region 21917
Tssr27907 2 170134527 to 170134556 29 - TSS region transcription start site region 27907
Tssr27908 2 170134572 to 170134583 11 - TSS region transcription start site region 27908
Tssr27909 2 170141607 to 170141611 4 - TSS region transcription start site region 27909
Tssr27910 2 170142673 to 170142678 5 - TSS region transcription start site region 27910
Tssr27911 2 170151666 to 170151685 19 - TSS region transcription start site region 27911
Tssr27912 2 170151686 to 170151700 14 - TSS region transcription start site region 27912
Cpgi12799 2 170153481 to 170153921 440 CpG island CpG island 12799
Tssr27913 2 170155101 to 170155107 6 - TSS region transcription start site region 27913
Tssr21918 2 170155124 to 170155129 5 + TSS region transcription start site region 21918
Tssr27914 2 170158420 to 170158442 22 - TSS region transcription start site region 27914
Tssr21919 2 170176032 to 170176069 37 + TSS region transcription start site region 21919
Gm34403 2 170177103 to 170186188 9085 - lncRNA gene predicted gene, 34403
Cpgi12800 2 170184372 to 170184739 367 CpG island CpG island 12800
Tssr21920 2 170184845 to 170184856 11 + TSS region transcription start site region 21920
Gm17619 2 170192449 to 170194053 1604 - lincRNA gene predicted gene, 17619
Tssr27915 2 170193453 to 170193464 11 - TSS region transcription start site region 27915
Tssr27916 2 170194033 to 170194064 31 - TSS region transcription start site region 27916
Tssr27917 2 170195850 to 170195873 23 - TSS region transcription start site region 27917
Tssr21921 2 170201977 to 170201999 22 + TSS region transcription start site region 21921
Tssr27918 2 170252793 to 170252807 14 - TSS region transcription start site region 27918
Tssr21922 2 170284960 to 170284980 20 + TSS region transcription start site region 21922
Gm14270 2 170285035 to 170285880 845 + pseudogene predicted gene 14270
Tssr21923 2 170285328 to 170285346 18 + TSS region transcription start site region 21923
Cpgi12801 2 170287386 to 170287614 228 CpG island CpG island 12801
Tssr21924 2 170316478 to 170316486 8 + TSS region transcription start site region 21924
Tssr21925 2 170316549 to 170316560 11 + TSS region transcription start site region 21925
Gm34542 2 170317716 to 170323401 5685 + lncRNA gene predicted gene, 34542
9430096G21Rik 2 170318641 to 170319231 590 unclassified gene RIKEN cDNA 9430096G21 gene
Cpgi12802 2 170319150 to 170319496 346 CpG island CpG island 12802
Cpgi12803 2 170324094 to 170324353 259 CpG island CpG island 12803
Gm39999 2 170328500 to 170337583 9083 - lncRNA gene predicted gene, 39999
Tssr21926 2 170336704 to 170336741 37 + TSS region transcription start site region 21926
Bcas1 2 170346991 to 170427845 80854 - protein coding gene breast carcinoma amplified sequence 1
Tssr27919 2 170349241 to 170349243 2 - TSS region transcription start site region 27919
Tssr21927 2 170349293 to 170349331 38 + TSS region transcription start site region 21927
Cpgi12804 2 170356205 to 170356395 190 CpG island CpG island 12804
Bcas1os2 2 170356361 to 170380435 24074 + antisense lncRNA gene breast carcinoma amplified sequence 1, opposite strand 2
Tssr27920 2 170357106 to 170357120 14 - TSS region transcription start site region 27920
Tssr27921 2 170357122 to 170357129 7 - TSS region transcription start site region 27921
Tssr21928 2 170375620 to 170375631 11 + TSS region transcription start site region 21928
Tssr27922 2 170387940 to 170387969 29 - TSS region transcription start site region 27922
Tssr27923 2 170387971 to 170388017 46 - TSS region transcription start site region 27923
Bcas1os1 2 170405181 to 170407175 1994 + antisense lncRNA gene breast carcinoma amplified sequence 1, opposite strand 1
Tssr27924 2 170406501 to 170406518 17 - TSS region transcription start site region 27924
Tssr27925 2 170427837 to 170427852 15 - TSS region transcription start site region 27925
Tssr27926 2 170427853 to 170427862 9 - TSS region transcription start site region 27926
Gm14269 2 170463514 to 170463819 305 - pseudogene predicted gene 14269
Tssr27927 2 170463879 to 170463896 17 - TSS region transcription start site region 27927
Gm34608 2 170465102 to 170470003 4901 - lncRNA gene predicted gene, 34608
Tssr27928 2 170470011 to 170470012 1 - TSS region transcription start site region 27928
Tssr27929 2 170470699 to 170470709 10 - TSS region transcription start site region 27929
Tssr27930 2 170470711 to 170470720 9 - TSS region transcription start site region 27930
Tssr21929 2 170470847 to 170470854 7 + TSS region transcription start site region 21929
Gm40000 2 170481602 to 170482474 872 + lncRNA gene predicted gene, 40000
Cyp24a1 2 170482957 to 170497145 14188 - protein coding gene cytochrome P450, family 24, subfamily a, polypeptide 1
Cpgi12805 2 170495410 to 170495570 160 CpG island CpG island 12805
Cpgi12806 2 170496050 to 170497665 1615 CpG island CpG island 12806
Pfdn4 2 170496428 to 170519070 22642 + protein coding gene prefoldin 4
Tssr27931 2 170497141 to 170497147 6 - TSS region transcription start site region 27931
Gm16796 2 170499357 to 170511927 12570 - antisense lncRNA gene predicted gene, 16796
Cpgi12807 2 170511119 to 170512123 1004 CpG island CpG island 12807
Tssr21930 2 170511418 to 170511451 33 + TSS region transcription start site region 21930
Tssr21931 2 170526733 to 170526774 41 + TSS region transcription start site region 21931
Tssr21932 2 170527600 to 170527619 19 + TSS region transcription start site region 21932
Cpgi12808 2 170528178 to 170528400 222 CpG island CpG island 12808
Gm40001 2 170557658 to 170564865 7207 + lncRNA gene predicted gene, 40001
Gm14637 2 170576054 to 170578424 2370 + antisense lncRNA gene predicted gene 14637
4930470P17Rik 2 170579418 to 170602017 22599 - protein coding gene RIKEN cDNA 4930470P17 gene
Tssr27932 2 170591650 to 170591655 5 - TSS region transcription start site region 27932
Gm40002 2 170638674 to 170653594 14920 + lncRNA gene predicted gene, 40002
Gm14264 2 170652434 to 170662465 10031 - lincRNA gene predicted gene 14264
Gm40003 2 170671103 to 170673838 2735 - lncRNA gene predicted gene, 40003
Tssr27933 2 170673800 to 170673814 14 - TSS region transcription start site region 27933
Cpgi12809 2 170695404 to 170695794 390 CpG island CpG island 12809
Gm34981 2 170712805 to 170725924 13119 + lncRNA gene predicted gene, 34981
Cpgi12810 2 170731620 to 170732502 882 CpG island CpG island 12810
Dok5 2 170731807 to 170879769 147962 + protein coding gene docking protein 5
Tssr21933 2 170731877 to 170731920 43 + TSS region transcription start site region 21933
Tssr21934 2 170731927 to 170731951 24 + TSS region transcription start site region 21934
Tssr21935 2 170731969 to 170731988 19 + TSS region transcription start site region 21935
D2Mit344 2 170758000 to 170758207 207 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 344
Cpgi12811 2 170761099 to 170761493 394 CpG island CpG island 12811
Gm35033 2 170774155 to 170776838 2683 - lncRNA gene predicted gene, 35033
Tssr27934 2 170775720 to 170775739 19 - TSS region transcription start site region 27934
Cpgi12812 2 170788453 to 170788653 200 CpG island CpG island 12812
D2Jcs38 2 170941784 to 170942087 303 DNA segment DNA segment, Chr 2, John C. Schimenti 38
Gm14263 2 170954079 to 170954824 745 - pseudogene predicted gene 14263
D2Mit25 2 171132612 to 171132724 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 25
Tssr21936 2 171193222 to 171193229 7 + TSS region transcription start site region 21936
Gm14266 2 171193269 to 171271350 78081 + lincRNA gene predicted gene 14266
Cpgi12813 2 171194803 to 171195151 348 CpG island CpG island 12813
Gm46779 2 171215497 to 171217947 2450 - lncRNA gene predicted gene, 46779
Gm14640 2 171215499 to 171217947 2448 + lincRNA gene predicted gene 14640
1700007M16Rik 2 171234009 to 171238991 4982 + lincRNA gene RIKEN cDNA 1700007M16 gene
Tssr21937 2 171253272 to 171253295 23 + TSS region transcription start site region 21937
Gm26489 2 171306168 to 171306431 263 - snoRNA gene predicted gene, 26489
Gm35434 2 171356240 to 171363723 7483 + lncRNA gene predicted gene, 35434
Gm35481 2 171622896 to 171640862 17966 - lncRNA gene predicted gene, 35481
Tssr21938 2 171640835 to 171640871 36 + TSS region transcription start site region 21938
Gm35529 2 171695778 to 171727200 31422 - lncRNA gene predicted gene, 35529
Gm35580 2 171832864 to 171840137 7273 - lncRNA gene predicted gene, 35580
D2Ertd239e 2 171938889 to 171939118 229 DNA segment DNA segment, Chr 2, ERATO Doi 239, expressed
D2Mit501 2 171951588 to 171951678 90 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 501
1700028P15Rik 2 171956879 to 171962799 5920 - lncRNA gene RIKEN cDNA 1700028P15 gene
Tssr27935 2 171962814 to 171962828 14 - TSS region transcription start site region 27935
Gm40005 2 171962901 to 171965622 2721 + lncRNA gene predicted gene, 40005
Gm14272 2 171988195 to 171989195 1000 - lincRNA gene predicted gene 14272
Gm14641 2 171995941 to 172003995 8054 - lincRNA gene predicted gene 14641
Tssr21939 2 172006931 to 172006964 33 + TSS region transcription start site region 21939
Cbln4 2 172036336 to 172043466 7130 - protein coding gene cerebellin 4 precursor protein
Cpgi12814 2 172041821 to 172043612 1791 CpG island CpG island 12814
Tssr27936 2 172043046 to 172043061 15 - TSS region transcription start site region 27936
Tssr27937 2 172043129 to 172043148 19 - TSS region transcription start site region 27937
Gm14271 2 172046526 to 172050134 3608 + antisense lncRNA gene predicted gene 14271
Tssr777 2 172100539 to 172100549 10 + TSS region transcription start site region 777
Tssr21940 2 172100611 to 172100627 16 + TSS region transcription start site region 21940
Gm14274 2 172100621 to 172101235 614 + pseudogene predicted gene 14274
Cpgi12815 2 172100641 to 172100825 184 CpG island CpG island 12815
Gm40006 2 172116575 to 172117195 620 + lncRNA gene predicted gene, 40006
Gm35719 2 172154601 to 172156413 1812 - lncRNA gene predicted gene, 35719
Gm44301 2 172176782 to 172176924 142 + miRNA gene predicted gene, 44301
Tssr27938 2 172225738 to 172225739 1 - TSS region transcription start site region 27938
Cpgi12816 2 172248240 to 172248546 306 CpG island CpG island 12816
Mc3r 2 172248492 to 172251114 2622 + protein coding gene melanocortin 3 receptor
Cpgi12817 2 172249158 to 172249980 822 CpG island CpG island 12817
Gm40007 2 172263129 to 172276213 13084 - lncRNA gene predicted gene, 40007
Gm40008 2 172285473 to 172297753 12280 - lncRNA gene predicted gene, 40008
Tssr21941 2 172287977 to 172288014 37 + TSS region transcription start site region 21941
Tssr21942 2 172288120 to 172288137 17 + TSS region transcription start site region 21942
Gm14275 2 172288133 to 172290520 2387 + lincRNA gene predicted gene 14275
Tssr21943 2 172288145 to 172288159 14 + TSS region transcription start site region 21943
Gm14273 2 172324334 to 172338663 14329 + antisense lncRNA gene predicted gene 14273
Cpgi12818 2 172329300 to 172329536 236 CpG island CpG island 12818
Cpgi12819 2 172345315 to 172346383 1068 CpG island CpG island 12819
Fam210b 2 172345570 to 172355749 10179 + protein coding gene family with sequence similarity 210, member B
Tssr21944 2 172345579 to 172345590 11 + TSS region transcription start site region 21944
Tssr21945 2 172345595 to 172345626 31 + TSS region transcription start site region 21945
Tssr21946 2 172345628 to 172345647 19 + TSS region transcription start site region 21946
Tssr27939 2 172345670 to 172345683 13 - TSS region transcription start site region 27939
Tssr21947 2 172353289 to 172353296 7 + TSS region transcription start site region 21947
Aurka 2 172356190 to 172370535 14345 - protein coding gene aurora kinase A
Cpgi12820 2 172370109 to 172371381 1272 CpG island CpG island 12820
Tssr27940 2 172370514 to 172370540 26 - TSS region transcription start site region 27940
Tssr21948 2 172370645 to 172370656 11 + TSS region transcription start site region 21948
Tssr21949 2 172370658 to 172370744 86 + TSS region transcription start site region 21949
Cstf1 2 172370686 to 172382449 11763 + protein coding gene cleavage stimulation factor, 3' pre-RNA, subunit 1
Tssr27941 2 172370878 to 172370922 44 - TSS region transcription start site region 27941
Tssr21950 2 172370939 to 172370985 46 + TSS region transcription start site region 21950
Cass4 2 172393794 to 172433757 39963 + protein coding gene Cas scaffolding protein family member 4
Tssr21951 2 172393802 to 172393829 27 + TSS region transcription start site region 21951
Tssr21952 2 172393948 to 172393964 16 + TSS region transcription start site region 21952
D2Mit147 2 172394708 to 172394821 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 147
Tssr27942 2 172396010 to 172396050 40 - TSS region transcription start site region 27942
Tssr27943 2 172398060 to 172398065 5 - TSS region transcription start site region 27943
Tssr778 2 172398207 to 172398229 22 + TSS region transcription start site region 778
Tssr779 2 172399435 to 172399443 8 + TSS region transcription start site region 779
Tssr27944 2 172401111 to 172401123 12 - TSS region transcription start site region 27944
Tssr27945 2 172401124 to 172401136 12 - TSS region transcription start site region 27945
Gm14455 2 172425804 to 172440560 14756 - antisense lncRNA gene predicted gene 14455
Cpgi12821 2 172440258 to 172441010 752 CpG island CpG island 12821
Tssr27946 2 172440516 to 172440529 13 - TSS region transcription start site region 27946
Tssr21953 2 172440565 to 172440630 65 + TSS region transcription start site region 21953
Rtf2 2 172440578 to 172469899 29321 + protein coding gene replication termination factor 2
Tssr21954 2 172440650 to 172440657 7 + TSS region transcription start site region 21954
Tssr21955 2 172442190 to 172442197 7 + TSS region transcription start site region 21955
Gcnt7 2 172450313 to 172458596 8283 - protein coding gene glucosaminyl (N-acetyl) transferase family member 7