Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:169183019-170083055

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gnf1 2 143931525 to 169276004 25344479 QTL growth and fatness 1
Gnf3 2 152857301 to 169276004 16418703 QTL growth and fatness 3
Pwbwq2 2 160769245 to 169952882 9183637 QTL pre-weaning body weight QTL 2
Pwgrq3 2 160769245 to 169952882 9183637 QTL pre-weaning growth rate QTL 3
Tssr27894 2 169233230 to 169233232 2 - TSS region transcription start site region 27894
9430093N23Rik 2 169234991 to 169237770 2779 + lincRNA gene RIKEN cDNA 9430093N23 gene
Gm33806 2 169240393 to 169246135 5742 + lncRNA gene predicted gene, 33806
D2Mit343 2 169275857 to 169276004 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 343
D2Dcr117 2 169275877 to 169276040 163 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 117
D2Mit146 2 169283825 to 169283973 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 146
Gm46788 2 169295771 to 169298456 2685 - lncRNA gene predicted gene, 46788
Cpgi12788 2 169297970 to 169298250 280 CpG island CpG island 12788
Gm39994 2 169374780 to 169379916 5136 + lncRNA gene predicted gene, 39994
Gm14250 2 169389081 to 169395524 6443 + lincRNA gene predicted gene 14250
4930529I22Rik 2 169399335 to 169405459 6124 - lincRNA gene RIKEN cDNA 4930529I22 gene
Tssr27895 2 169403367 to 169403369 2 - TSS region transcription start site region 27895
Tssr27896 2 169405435 to 169405473 38 - TSS region transcription start site region 27896
Gm34112 2 169451140 to 169494980 43840 - lncRNA gene predicted gene, 34112
Gm14249 2 169461769 to 169483368 21599 + lincRNA gene predicted gene 14249
Cpgi12789 2 169524585 to 169524841 256 CpG island CpG island 12789
Cpgi12790 2 169540965 to 169541245 280 CpG island CpG island 12790
Gm11011 2 169582845 to 169587745 4900 - protein coding gene predicted gene 11011
Tssr21894 2 169599795 to 169599796 1 + TSS region transcription start site region 21894
Gm34294 2 169624056 to 169628318 4262 - protein coding gene predicted gene, 34294
Tssr21895 2 169632496 to 169632514 18 + TSS region transcription start site region 21895
Tssr21896 2 169632692 to 169632747 55 + TSS region transcription start site region 21896
Cpgi12791 2 169632708 to 169633116 408 CpG island CpG island 12791
Tssr21897 2 169632852 to 169632897 45 + TSS region transcription start site region 21897
Tssr21898 2 169632996 to 169633016 20 + TSS region transcription start site region 21898
Tshz2 2 169633013 to 170071816 438803 + protein coding gene teashirt zinc finger family member 2
Tssr21899 2 169633019 to 169633055 36 + TSS region transcription start site region 21899
Tssr21900 2 169633093 to 169633103 10 + TSS region transcription start site region 21900
Tssr21901 2 169633299 to 169633332 33 + TSS region transcription start site region 21901
Tssr21902 2 169633338 to 169633359 21 + TSS region transcription start site region 21902
Cpgi12792 2 169633343 to 169634192 849 CpG island CpG island 12792
Tssr21903 2 169633517 to 169633529 12 + TSS region transcription start site region 21903
Gm26883 2 169633646 to 169888503 254857 - lincRNA gene predicted gene, 26883
Tssr21904 2 169641121 to 169641146 25 + TSS region transcription start site region 21904
Gm39997 2 169643975 to 169645786 1811 + lncRNA gene predicted gene, 39997
Tssr21905 2 169664922 to 169664938 16 + TSS region transcription start site region 21905
Gm34344 2 169665610 to 169667260 1650 - lncRNA gene predicted gene, 34344
Tssr21906 2 169684286 to 169684290 4 + TSS region transcription start site region 21906
Tssr27897 2 169686887 to 169686892 5 - TSS region transcription start site region 27897
Tssr21907 2 169699396 to 169699403 7 + TSS region transcription start site region 21907
Tssr21908 2 169708271 to 169708275 4 + TSS region transcription start site region 21908
Tssr21909 2 169723962 to 169723977 15 + TSS region transcription start site region 21909
Tssr21910 2 169726050 to 169726054 4 + TSS region transcription start site region 21910
Cpgi12793 2 169762145 to 169762413 268 CpG island CpG island 12793
Cpgi12794 2 169783301 to 169783600 299 CpG island CpG island 12794
Tssr27898 2 169888023 to 169888040 17 - TSS region transcription start site region 27898
Cpgi12795 2 169912378 to 169912858 480 CpG island CpG island 12795
Tssr21911 2 169915089 to 169915098 9 + TSS region transcription start site region 21911
Tssr21912 2 169915116 to 169915130 14 + TSS region transcription start site region 21912
Tssr776 2 169949468 to 169949472 4 + TSS region transcription start site region 776
Pwbwq3 2 169952882 to 179278998 9326116 QTL pre-weaning body weight QTL 3
AY702102 2 169962015 to 169963187 1172 - lncRNA gene cDNA sequence AY702102
Tssr27899 2 169963075 to 169963082 7 - TSS region transcription start site region 27899
Tssr27900 2 169963169 to 169963201 32 - TSS region transcription start site region 27900
Tssr27901 2 169970576 to 169970585 9 - TSS region transcription start site region 27901
Tssr21913 2 169970790 to 169970802 12 + TSS region transcription start site region 21913
Tssr21914 2 169970807 to 169970819 12 + TSS region transcription start site region 21914
A630075F10Rik 2 170061240 to 170070671 9431 - lincRNA gene RIKEN cDNA A630075F10 gene