Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:169020101-171290107

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gnf1 2 143931525 to 169276004 25344479 QTL growth and fatness 1
Gnf3 2 152857301 to 169276004 16418703 QTL growth and fatness 3
Pwgrq3 2 160769245 to 169952882 9183637 QTL pre-weaning growth rate QTL 3
Pwbwq2 2 160769245 to 169952882 9183637 QTL pre-weaning body weight QTL 2
Gm9873 2 169020025 to 169021385 1360 + lincRNA gene predicted gene 9873
D2Mit500 2 169057844 to 169057963 119 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 500
Gm26469 2 169061120 to 169061240 120 + miRNA gene predicted gene, 26469
4933407C09Rik 2 169080641 to 169082059 1418 unclassified gene RIKEN cDNA 4933407C09 gene
Tssr27892 2 169081772 to 169081783 11 - TSS region transcription start site region 27892
Gm14258 2 169106453 to 169110415 3962 + lincRNA gene predicted gene 14258
Tssr27893 2 169155701 to 169155728 27 - TSS region transcription start site region 27893
Tssr27894 2 169233230 to 169233232 2 - TSS region transcription start site region 27894
9430093N23Rik 2 169234991 to 169237770 2779 + lincRNA gene RIKEN cDNA 9430093N23 gene
Gm33806 2 169240393 to 169246135 5742 + lncRNA gene predicted gene, 33806
D2Mit343 2 169275857 to 169276004 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 343
D2Dcr117 2 169275877 to 169276040 163 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 117
D2Mit146 2 169283825 to 169283973 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 146
Gm46788 2 169295771 to 169298456 2685 - lncRNA gene predicted gene, 46788
Cpgi12788 2 169297970 to 169298250 280 CpG island CpG island 12788
Gm39994 2 169374780 to 169379916 5136 + lncRNA gene predicted gene, 39994
Gm14250 2 169389081 to 169395524 6443 + lincRNA gene predicted gene 14250
4930529I22Rik 2 169399335 to 169405459 6124 - lincRNA gene RIKEN cDNA 4930529I22 gene
Tssr27895 2 169403367 to 169403369 2 - TSS region transcription start site region 27895
Tssr27896 2 169405435 to 169405473 38 - TSS region transcription start site region 27896
Gm34112 2 169451140 to 169494980 43840 - lncRNA gene predicted gene, 34112
Gm14249 2 169461769 to 169483368 21599 + lincRNA gene predicted gene 14249
Cpgi12789 2 169524585 to 169524841 256 CpG island CpG island 12789
Cpgi12790 2 169540965 to 169541245 280 CpG island CpG island 12790
Gm11011 2 169582845 to 169587745 4900 - protein coding gene predicted gene 11011
Tssr21894 2 169599795 to 169599796 1 + TSS region transcription start site region 21894
Gm34294 2 169624056 to 169628318 4262 - protein coding gene predicted gene, 34294
Tssr21895 2 169632496 to 169632514 18 + TSS region transcription start site region 21895
Tssr21896 2 169632692 to 169632747 55 + TSS region transcription start site region 21896
Cpgi12791 2 169632708 to 169633116 408 CpG island CpG island 12791
Tssr21897 2 169632852 to 169632897 45 + TSS region transcription start site region 21897
Tssr21898 2 169632996 to 169633016 20 + TSS region transcription start site region 21898
Tshz2 2 169633013 to 170071816 438803 + protein coding gene teashirt zinc finger family member 2
Tssr21899 2 169633019 to 169633055 36 + TSS region transcription start site region 21899
Tssr21900 2 169633093 to 169633103 10 + TSS region transcription start site region 21900
Tssr21901 2 169633299 to 169633332 33 + TSS region transcription start site region 21901
Tssr21902 2 169633338 to 169633359 21 + TSS region transcription start site region 21902
Cpgi12792 2 169633343 to 169634192 849 CpG island CpG island 12792
Tssr21903 2 169633517 to 169633529 12 + TSS region transcription start site region 21903
Gm26883 2 169633646 to 169888503 254857 - lincRNA gene predicted gene, 26883
Tssr21904 2 169641121 to 169641146 25 + TSS region transcription start site region 21904
Gm39997 2 169643975 to 169645786 1811 + lncRNA gene predicted gene, 39997
Tssr21905 2 169664922 to 169664938 16 + TSS region transcription start site region 21905
Gm34344 2 169665610 to 169667260 1650 - lncRNA gene predicted gene, 34344
Tssr21906 2 169684286 to 169684290 4 + TSS region transcription start site region 21906
Tssr27897 2 169686887 to 169686892 5 - TSS region transcription start site region 27897
Tssr21907 2 169699396 to 169699403 7 + TSS region transcription start site region 21907
Tssr21908 2 169708271 to 169708275 4 + TSS region transcription start site region 21908
Tssr21909 2 169723962 to 169723977 15 + TSS region transcription start site region 21909
Tssr21910 2 169726050 to 169726054 4 + TSS region transcription start site region 21910
Cpgi12793 2 169762145 to 169762413 268 CpG island CpG island 12793
Cpgi12794 2 169783301 to 169783600 299 CpG island CpG island 12794
Tssr27898 2 169888023 to 169888040 17 - TSS region transcription start site region 27898
Cpgi12795 2 169912378 to 169912858 480 CpG island CpG island 12795
Tssr21911 2 169915089 to 169915098 9 + TSS region transcription start site region 21911
Tssr21912 2 169915116 to 169915130 14 + TSS region transcription start site region 21912
Tssr776 2 169949468 to 169949472 4 + TSS region transcription start site region 776
Pwbwq3 2 169952882 to 179278998 9326116 QTL pre-weaning body weight QTL 3
AY702102 2 169962015 to 169963187 1172 - lncRNA gene cDNA sequence AY702102
Tssr27899 2 169963075 to 169963082 7 - TSS region transcription start site region 27899
Tssr27900 2 169963169 to 169963201 32 - TSS region transcription start site region 27900
Tssr27901 2 169970576 to 169970585 9 - TSS region transcription start site region 27901
Tssr21913 2 169970790 to 169970802 12 + TSS region transcription start site region 21913
Tssr21914 2 169970807 to 169970819 12 + TSS region transcription start site region 21914
A630075F10Rik 2 170061240 to 170070671 9431 - lincRNA gene RIKEN cDNA A630075F10 gene
D2Mit415 2 170092356 to 170092444 88 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 415
Cpgi12796 2 170094330 to 170094830 500 CpG island CpG island 12796
Zfp217 2 170108643 to 170148103 39460 - protein coding gene zinc finger protein 217
Tssr27902 2 170108908 to 170108917 9 - TSS region transcription start site region 27902
D2Mit112 2 170116443 to 170116570 127 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 112
Tssr27903 2 170122077 to 170122084 7 - TSS region transcription start site region 27903
Cpgi12797 2 170130226 to 170131680 1454 CpG island CpG island 12797
Tssr27904 2 170131156 to 170131184 28 - TSS region transcription start site region 27904
Tssr21915 2 170131344 to 170131362 18 + TSS region transcription start site region 21915
Tssr27905 2 170132037 to 170132051 14 - TSS region transcription start site region 27905
Tssr21916 2 170132379 to 170132386 7 + TSS region transcription start site region 21916
Cpgi12798 2 170133353 to 170133857 504 CpG island CpG island 12798
Tssr27906 2 170133542 to 170133565 23 - TSS region transcription start site region 27906
Tssr21917 2 170133659 to 170133679 20 + TSS region transcription start site region 21917
Tssr27907 2 170134527 to 170134556 29 - TSS region transcription start site region 27907
Tssr27908 2 170134572 to 170134583 11 - TSS region transcription start site region 27908
Tssr27909 2 170141607 to 170141611 4 - TSS region transcription start site region 27909
Tssr27910 2 170142673 to 170142678 5 - TSS region transcription start site region 27910
Tssr27911 2 170151666 to 170151685 19 - TSS region transcription start site region 27911
Tssr27912 2 170151686 to 170151700 14 - TSS region transcription start site region 27912
Cpgi12799 2 170153481 to 170153921 440 CpG island CpG island 12799
Tssr27913 2 170155101 to 170155107 6 - TSS region transcription start site region 27913
Tssr21918 2 170155124 to 170155129 5 + TSS region transcription start site region 21918
Tssr27914 2 170158420 to 170158442 22 - TSS region transcription start site region 27914
Tssr21919 2 170176032 to 170176069 37 + TSS region transcription start site region 21919
Gm34403 2 170177103 to 170186188 9085 - lncRNA gene predicted gene, 34403
Cpgi12800 2 170184372 to 170184739 367 CpG island CpG island 12800
Tssr21920 2 170184845 to 170184856 11 + TSS region transcription start site region 21920
Gm17619 2 170192449 to 170194053 1604 - lincRNA gene predicted gene, 17619
Tssr27915 2 170193453 to 170193464 11 - TSS region transcription start site region 27915
Tssr27916 2 170194033 to 170194064 31 - TSS region transcription start site region 27916
Tssr27917 2 170195850 to 170195873 23 - TSS region transcription start site region 27917
Tssr21921 2 170201977 to 170201999 22 + TSS region transcription start site region 21921
Tssr27918 2 170252793 to 170252807 14 - TSS region transcription start site region 27918
Tssr21922 2 170284960 to 170284980 20 + TSS region transcription start site region 21922
Gm14270 2 170285035 to 170285880 845 + pseudogene predicted gene 14270
Tssr21923 2 170285328 to 170285346 18 + TSS region transcription start site region 21923
Cpgi12801 2 170287386 to 170287614 228 CpG island CpG island 12801
Tssr21924 2 170316478 to 170316486 8 + TSS region transcription start site region 21924
Tssr21925 2 170316549 to 170316560 11 + TSS region transcription start site region 21925
Gm34542 2 170317716 to 170323401 5685 + lncRNA gene predicted gene, 34542
9430096G21Rik 2 170318641 to 170319231 590 unclassified gene RIKEN cDNA 9430096G21 gene
Cpgi12802 2 170319150 to 170319496 346 CpG island CpG island 12802
Cpgi12803 2 170324094 to 170324353 259 CpG island CpG island 12803
Gm39999 2 170328500 to 170337583 9083 - lncRNA gene predicted gene, 39999
Tssr21926 2 170336704 to 170336741 37 + TSS region transcription start site region 21926
Bcas1 2 170346991 to 170427845 80854 - protein coding gene breast carcinoma amplified sequence 1
Tssr27919 2 170349241 to 170349243 2 - TSS region transcription start site region 27919
Tssr21927 2 170349293 to 170349331 38 + TSS region transcription start site region 21927
Cpgi12804 2 170356205 to 170356395 190 CpG island CpG island 12804
Bcas1os2 2 170356361 to 170380435 24074 + antisense lncRNA gene breast carcinoma amplified sequence 1, opposite strand 2
Tssr27920 2 170357106 to 170357120 14 - TSS region transcription start site region 27920
Tssr27921 2 170357122 to 170357129 7 - TSS region transcription start site region 27921
Tssr21928 2 170375620 to 170375631 11 + TSS region transcription start site region 21928
Tssr27922 2 170387940 to 170387969 29 - TSS region transcription start site region 27922
Tssr27923 2 170387971 to 170388017 46 - TSS region transcription start site region 27923
Bcas1os1 2 170405181 to 170407175 1994 + antisense lncRNA gene breast carcinoma amplified sequence 1, opposite strand 1
Tssr27924 2 170406501 to 170406518 17 - TSS region transcription start site region 27924
Tssr27925 2 170427837 to 170427852 15 - TSS region transcription start site region 27925
Tssr27926 2 170427853 to 170427862 9 - TSS region transcription start site region 27926
Gm14269 2 170463514 to 170463819 305 - pseudogene predicted gene 14269
Tssr27927 2 170463879 to 170463896 17 - TSS region transcription start site region 27927
Gm34608 2 170465102 to 170470003 4901 - lncRNA gene predicted gene, 34608
Tssr27928 2 170470011 to 170470012 1 - TSS region transcription start site region 27928
Tssr27929 2 170470699 to 170470709 10 - TSS region transcription start site region 27929
Tssr27930 2 170470711 to 170470720 9 - TSS region transcription start site region 27930
Tssr21929 2 170470847 to 170470854 7 + TSS region transcription start site region 21929
Gm40000 2 170481602 to 170482474 872 + lncRNA gene predicted gene, 40000
Cyp24a1 2 170482957 to 170497145 14188 - protein coding gene cytochrome P450, family 24, subfamily a, polypeptide 1
Cpgi12805 2 170495410 to 170495570 160 CpG island CpG island 12805
Cpgi12806 2 170496050 to 170497665 1615 CpG island CpG island 12806
Pfdn4 2 170496428 to 170519070 22642 + protein coding gene prefoldin 4
Tssr27931 2 170497141 to 170497147 6 - TSS region transcription start site region 27931
Gm16796 2 170499357 to 170511927 12570 - antisense lncRNA gene predicted gene, 16796
Cpgi12807 2 170511119 to 170512123 1004 CpG island CpG island 12807
Tssr21930 2 170511418 to 170511451 33 + TSS region transcription start site region 21930
Tssr21931 2 170526733 to 170526774 41 + TSS region transcription start site region 21931
Tssr21932 2 170527600 to 170527619 19 + TSS region transcription start site region 21932
Cpgi12808 2 170528178 to 170528400 222 CpG island CpG island 12808
Gm40001 2 170557658 to 170564865 7207 + lncRNA gene predicted gene, 40001
Gm14637 2 170576054 to 170578424 2370 + antisense lncRNA gene predicted gene 14637
4930470P17Rik 2 170579418 to 170602017 22599 - protein coding gene RIKEN cDNA 4930470P17 gene
Tssr27932 2 170591650 to 170591655 5 - TSS region transcription start site region 27932
Gm40002 2 170638674 to 170653594 14920 + lncRNA gene predicted gene, 40002
Gm14264 2 170652434 to 170662465 10031 - lincRNA gene predicted gene 14264
Gm40003 2 170671103 to 170673838 2735 - lncRNA gene predicted gene, 40003
Tssr27933 2 170673800 to 170673814 14 - TSS region transcription start site region 27933
Cpgi12809 2 170695404 to 170695794 390 CpG island CpG island 12809
Gm34981 2 170712805 to 170725924 13119 + lncRNA gene predicted gene, 34981
Cpgi12810 2 170731620 to 170732502 882 CpG island CpG island 12810
Dok5 2 170731807 to 170879769 147962 + protein coding gene docking protein 5
Tssr21933 2 170731877 to 170731920 43 + TSS region transcription start site region 21933
Tssr21934 2 170731927 to 170731951 24 + TSS region transcription start site region 21934
Tssr21935 2 170731969 to 170731988 19 + TSS region transcription start site region 21935
D2Mit344 2 170758000 to 170758207 207 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 344
Cpgi12811 2 170761099 to 170761493 394 CpG island CpG island 12811
Gm35033 2 170774155 to 170776838 2683 - lncRNA gene predicted gene, 35033
Tssr27934 2 170775720 to 170775739 19 - TSS region transcription start site region 27934
Cpgi12812 2 170788453 to 170788653 200 CpG island CpG island 12812
D2Jcs38 2 170941784 to 170942087 303 DNA segment DNA segment, Chr 2, John C. Schimenti 38
Gm14263 2 170954079 to 170954824 745 - pseudogene predicted gene 14263
D2Mit25 2 171132612 to 171132724 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 25
Tssr21936 2 171193222 to 171193229 7 + TSS region transcription start site region 21936
Gm14266 2 171193269 to 171271350 78081 + lincRNA gene predicted gene 14266
Cpgi12813 2 171194803 to 171195151 348 CpG island CpG island 12813
Gm46779 2 171215497 to 171217947 2450 - lncRNA gene predicted gene, 46779
Gm14640 2 171215499 to 171217947 2448 + lincRNA gene predicted gene 14640
1700007M16Rik 2 171234009 to 171238991 4982 + lincRNA gene RIKEN cDNA 1700007M16 gene
Tssr21937 2 171253272 to 171253295 23 + TSS region transcription start site region 21937