Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:168877970-169718250

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gnf1 2 143931525 to 169276004 25344479 QTL growth and fatness 1
Gnf3 2 152857301 to 169276004 16418703 QTL growth and fatness 3
Gm25214 2 168882040 to 168882168 128 - snoRNA gene predicted gene, 25214
Gm38422 2 168893337 to 168912749 19412 - protein coding gene predicted gene, 38422
Cpgi12779 2 168893947 to 168894538 591 CpG island CpG island 12779
Cpgi12780 2 168911435 to 168911790 355 CpG island CpG island 12780
Cpgi12781 2 168911878 to 168913113 1235 CpG island CpG island 12781
Zfp64 2 168925361 to 168955587 30226 - protein coding gene zinc finger protein 64
Cpgi12782 2 168925691 to 168926854 1163 CpG island CpG island 12782
Tssr27886 2 168932565 to 168932568 3 - TSS region transcription start site region 27886
Cpgi12783 2 168935030 to 168935616 586 CpG island CpG island 12783
D2Mit456 2 168936377 to 168936499 122 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 456
Bmd6 2 168936377 to 168936499 122 QTL bone mineral density 6
Cpgi12784 2 168954638 to 168955708 1070 CpG island CpG island 12784
Tssr27887 2 168955229 to 168955240 11 - TSS region transcription start site region 27887
Tssr27888 2 168955257 to 168955305 48 - TSS region transcription start site region 27888
Tssr27889 2 168955514 to 168955525 11 - TSS region transcription start site region 27889
Tssr27890 2 168955529 to 168955593 64 - TSS region transcription start site region 27890
Gm39993 2 168955702 to 168958248 2546 + lncRNA gene predicted gene, 39993
Tssr21884 2 168956232 to 168956256 24 + TSS region transcription start site region 21884
Tssr21885 2 168961035 to 168961048 13 + TSS region transcription start site region 21885
Tssr21886 2 168962145 to 168962162 17 + TSS region transcription start site region 21886
Tssr27891 2 168970111 to 168970130 19 - TSS region transcription start site region 27891
Cpgi12785 2 168970114 to 168970526 412 CpG island CpG island 12785
Tssr21887 2 168970455 to 168970477 22 + TSS region transcription start site region 21887
Tssr21888 2 168978241 to 168978242 1 + TSS region transcription start site region 21888
Tssr21889 2 168978250 to 168978260 10 + TSS region transcription start site region 21889
Tssr21890 2 168978262 to 168978281 19 + TSS region transcription start site region 21890
1700017J07Rik 2 168978269 to 168978906 637 + lincRNA gene RIKEN cDNA 1700017J07 gene
Tssr21891 2 168978294 to 168978302 8 + TSS region transcription start site region 21891
Gm33622 2 168980121 to 168987373 7252 + lncRNA gene predicted gene, 33622
Tssr21892 2 168981158 to 168981196 38 + TSS region transcription start site region 21892
Gm4721 2 168983264 to 168986191 2927 - pseudogene predicted gene 4721
Gm14260 2 168986566 to 168987373 807 - lincRNA gene predicted gene 14260
Cpgi12786 2 168993157 to 168993346 189 CpG island CpG island 12786
Tssr21893 2 169006008 to 169006071 63 + TSS region transcription start site region 21893
Cpgi12787 2 169008840 to 169009086 246 CpG island CpG island 12787
Gm9873 2 169020025 to 169021385 1360 + lincRNA gene predicted gene 9873
D2Mit500 2 169057844 to 169057963 119 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 500
Gm26469 2 169061120 to 169061240 120 + miRNA gene predicted gene, 26469
4933407C09Rik 2 169080641 to 169082059 1418 unclassified gene RIKEN cDNA 4933407C09 gene
Tssr27892 2 169081772 to 169081783 11 - TSS region transcription start site region 27892
Gm14258 2 169106453 to 169110415 3962 + lincRNA gene predicted gene 14258
Tssr27893 2 169155701 to 169155728 27 - TSS region transcription start site region 27893
Tssr27894 2 169233230 to 169233232 2 - TSS region transcription start site region 27894
9430093N23Rik 2 169234991 to 169237770 2779 + lincRNA gene RIKEN cDNA 9430093N23 gene
Gm33806 2 169240393 to 169246135 5742 + lncRNA gene predicted gene, 33806
D2Mit343 2 169275857 to 169276004 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 343
D2Dcr117 2 169275877 to 169276040 163 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 117
D2Mit146 2 169283825 to 169283973 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 146
Gm46788 2 169295771 to 169298456 2685 - lncRNA gene predicted gene, 46788
Cpgi12788 2 169297970 to 169298250 280 CpG island CpG island 12788
Gm39994 2 169374780 to 169379916 5136 + lncRNA gene predicted gene, 39994
Gm14250 2 169389081 to 169395524 6443 + lincRNA gene predicted gene 14250
4930529I22Rik 2 169399335 to 169405459 6124 - lincRNA gene RIKEN cDNA 4930529I22 gene
Tssr27895 2 169403367 to 169403369 2 - TSS region transcription start site region 27895
Tssr27896 2 169405435 to 169405473 38 - TSS region transcription start site region 27896
Gm34112 2 169451140 to 169494980 43840 - lncRNA gene predicted gene, 34112
Gm14249 2 169461769 to 169483368 21599 + lincRNA gene predicted gene 14249
Cpgi12789 2 169524585 to 169524841 256 CpG island CpG island 12789
Cpgi12790 2 169540965 to 169541245 280 CpG island CpG island 12790
Gm11011 2 169582845 to 169587745 4900 - protein coding gene predicted gene 11011
Tssr21894 2 169599795 to 169599796 1 + TSS region transcription start site region 21894
Gm34294 2 169624056 to 169628318 4262 - protein coding gene predicted gene, 34294
Tssr21895 2 169632496 to 169632514 18 + TSS region transcription start site region 21895
Tssr21896 2 169632692 to 169632747 55 + TSS region transcription start site region 21896
Cpgi12791 2 169632708 to 169633116 408 CpG island CpG island 12791
Tssr21897 2 169632852 to 169632897 45 + TSS region transcription start site region 21897
Tssr21898 2 169632996 to 169633016 20 + TSS region transcription start site region 21898
Tshz2 2 169633013 to 170071816 438803 + protein coding gene teashirt zinc finger family member 2
Tssr21899 2 169633019 to 169633055 36 + TSS region transcription start site region 21899
Tssr21900 2 169633093 to 169633103 10 + TSS region transcription start site region 21900
Tssr21901 2 169633299 to 169633332 33 + TSS region transcription start site region 21901
Tssr21902 2 169633338 to 169633359 21 + TSS region transcription start site region 21902
Cpgi12792 2 169633343 to 169634192 849 CpG island CpG island 12792
Tssr21903 2 169633517 to 169633529 12 + TSS region transcription start site region 21903
Gm26883 2 169633646 to 169888503 254857 - lincRNA gene predicted gene, 26883
Tssr21904 2 169641121 to 169641146 25 + TSS region transcription start site region 21904
Gm39997 2 169643975 to 169645786 1811 + lncRNA gene predicted gene, 39997
Tssr21905 2 169664922 to 169664938 16 + TSS region transcription start site region 21905
Gm34344 2 169665610 to 169667260 1650 - lncRNA gene predicted gene, 34344
Tssr21906 2 169684286 to 169684290 4 + TSS region transcription start site region 21906
Tssr27897 2 169686887 to 169686892 5 - TSS region transcription start site region 27897
Tssr21907 2 169699396 to 169699403 7 + TSS region transcription start site region 21907
Tssr21908 2 169708271 to 169708275 4 + TSS region transcription start site region 21908