Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:168356613-172988406

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436 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gnf1 2 143931525 to 169276004 25344479 QTL growth and fatness 1
Gnf3 2 152857301 to 169276004 16418703 QTL growth and fatness 3
Pwbwq2 2 160769245 to 169952882 9183637 QTL pre-weaning body weight QTL 2
Pwgrq3 2 160769245 to 169952882 9183637 QTL pre-weaning growth rate QTL 3
Hpdty 2 165822973 to 168781758 2958785 QTL hindlimb polydactyly
Cpgi12771 2 168393444 to 168393687 243 CpG island CpG island 12771
Gm39992 2 168398622 to 168402893 4271 - lncRNA gene predicted gene, 39992
Gm33262 2 168403903 to 168404898 995 + lncRNA gene predicted gene, 33262
Gm33359 2 168407676 to 168424136 16460 + lncRNA gene predicted gene, 33359
Cpgi12772 2 168415212 to 168415418 206 CpG island CpG island 12772
Gm14234 2 168417739 to 168418574 835 - pseudogene predicted gene 14234
Gm33413 2 168439519 to 168442405 2886 + lncRNA gene predicted gene, 33413
Nfatc2 2 168476410 to 168601657 125247 - protein coding gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2
Cpgi12773 2 168479939 to 168480230 291 CpG island CpG island 12773
Tssr27846 2 168508172 to 168508221 49 - TSS region transcription start site region 27846
Tssr27847 2 168513184 to 168513200 16 - TSS region transcription start site region 27847
Tssr27848 2 168515261 to 168515273 12 - TSS region transcription start site region 27848
Tssr21874 2 168532356 to 168532372 16 + TSS region transcription start site region 21874
D2Mit414 2 168536699 to 168536807 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 414
Tssr21875 2 168549048 to 168549059 11 + TSS region transcription start site region 21875
Cpgi12774 2 168570760 to 168571598 838 CpG island CpG island 12774
Tssr27849 2 168571197 to 168571218 21 - TSS region transcription start site region 27849
Tssr27850 2 168571423 to 168571449 26 - TSS region transcription start site region 27850
Tssr21876 2 168579355 to 168579398 43 + TSS region transcription start site region 21876
Cpgi12775 2 168589678 to 168590843 1165 CpG island CpG island 12775
Tssr27851 2 168590291 to 168590302 11 - TSS region transcription start site region 27851
Tssr27852 2 168590315 to 168590372 57 - TSS region transcription start site region 27852
Tssr21877 2 168590441 to 168590476 35 + TSS region transcription start site region 21877
Cpgi12776 2 168601122 to 168602216 1094 CpG island CpG island 12776
Tssr27853 2 168601568 to 168601615 47 - TSS region transcription start site region 27853
Tssr27854 2 168601620 to 168601638 18 - TSS region transcription start site region 27854
Tssr27855 2 168601752 to 168601773 21 - TSS region transcription start site region 27855
Atp9a 2 168634438 to 168742370 107932 - protein coding gene ATPase, class II, type 9A
Mir7004 2 168640696 to 168640759 63 - miRNA gene microRNA 7004
Tssr27856 2 168670052 to 168670084 32 - TSS region transcription start site region 27856
Tssr27857 2 168670088 to 168670102 14 - TSS region transcription start site region 27857
Tssr21878 2 168670201 to 168670210 9 + TSS region transcription start site region 21878
Tssr27858 2 168670392 to 168670425 33 - TSS region transcription start site region 27858
Tssr21879 2 168670493 to 168670541 48 + TSS region transcription start site region 21879
Tssr27859 2 168712853 to 168712935 82 - TSS region transcription start site region 27859
Tssr27860 2 168722547 to 168722549 2 - TSS region transcription start site region 27860
Tssr27861 2 168734060 to 168734135 75 - TSS region transcription start site region 27861
Tssr27862 2 168734236 to 168734286 50 - TSS region transcription start site region 27862
Cpgi12777 2 168741181 to 168742555 1374 CpG island CpG island 12777
Tssr27863 2 168741752 to 168741774 22 - TSS region transcription start site region 27863
Tssr27864 2 168741850 to 168741870 20 - TSS region transcription start site region 27864
Tssr27865 2 168741898 to 168741973 75 - TSS region transcription start site region 27865
Tssr27866 2 168741976 to 168741993 17 - TSS region transcription start site region 27866
Tssr27867 2 168742100 to 168742142 42 - TSS region transcription start site region 27867
Sall4 2 168748332 to 168767201 18869 - protein coding gene spalt like transcription factor 4
Tssr27868 2 168749428 to 168749455 27 - TSS region transcription start site region 27868
Tssr27869 2 168749484 to 168749512 28 - TSS region transcription start site region 27869
Tssr27870 2 168749943 to 168749948 5 - TSS region transcription start site region 27870
Tssr27871 2 168749992 to 168750018 26 - TSS region transcription start site region 27871
Tssr27872 2 168764804 to 168764808 4 - TSS region transcription start site region 27872
Cpgi12778 2 168764991 to 168767208 2217 CpG island CpG island 12778
Tssr27873 2 168765245 to 168765261 16 - TSS region transcription start site region 27873
Tssr27874 2 168765304 to 168765315 11 - TSS region transcription start site region 27874
Tssr27875 2 168765335 to 168765361 26 - TSS region transcription start site region 27875
Tssr27876 2 168765370 to 168765441 71 - TSS region transcription start site region 27876
Tssr21880 2 168766141 to 168766147 6 + TSS region transcription start site region 21880
Gm14261 2 168766143 to 168768108 1965 + lncRNA gene predicted gene 14261
Tssr21881 2 168766544 to 168766550 6 + TSS region transcription start site region 21881
Tssr27877 2 168766641 to 168766660 19 - TSS region transcription start site region 27877
Tssr27878 2 168767036 to 168767045 9 - TSS region transcription start site region 27878
Tssr27879 2 168767062 to 168767065 3 - TSS region transcription start site region 27879
Tssr27880 2 168767076 to 168767083 7 - TSS region transcription start site region 27880
Tssr27881 2 168767091 to 168767104 13 - TSS region transcription start site region 27881
Tssr27882 2 168767136 to 168767151 15 - TSS region transcription start site region 27882
Tssr27883 2 168767159 to 168767162 3 - TSS region transcription start site region 27883
Tssr27884 2 168767190 to 168767206 16 - TSS region transcription start site region 27884
Tssr27885 2 168767286 to 168767297 11 - TSS region transcription start site region 27885
Tssr21882 2 168771725 to 168771754 29 + TSS region transcription start site region 21882
Tssr21883 2 168778632 to 168778633 1 + TSS region transcription start site region 21883
D2Mit229 2 168781613 to 168781758 145 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 229
Skts13 2 168781613 to 172563406 3781793 QTL skin tumor sucseptibility 13
Gm25214 2 168882040 to 168882168 128 - snoRNA gene predicted gene, 25214
Gm38422 2 168893337 to 168912749 19412 - protein coding gene predicted gene, 38422
Cpgi12779 2 168893947 to 168894538 591 CpG island CpG island 12779
Cpgi12780 2 168911435 to 168911790 355 CpG island CpG island 12780
Cpgi12781 2 168911878 to 168913113 1235 CpG island CpG island 12781
Zfp64 2 168925361 to 168955587 30226 - protein coding gene zinc finger protein 64
Cpgi12782 2 168925691 to 168926854 1163 CpG island CpG island 12782
Tssr27886 2 168932565 to 168932568 3 - TSS region transcription start site region 27886
Cpgi12783 2 168935030 to 168935616 586 CpG island CpG island 12783
D2Mit456 2 168936377 to 168936499 122 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 456
Bmd6 2 168936377 to 168936499 122 QTL bone mineral density 6
Cpgi12784 2 168954638 to 168955708 1070 CpG island CpG island 12784
Tssr27887 2 168955229 to 168955240 11 - TSS region transcription start site region 27887
Tssr27888 2 168955257 to 168955305 48 - TSS region transcription start site region 27888
Tssr27889 2 168955514 to 168955525 11 - TSS region transcription start site region 27889
Tssr27890 2 168955529 to 168955593 64 - TSS region transcription start site region 27890
Gm39993 2 168955702 to 168958248 2546 + lncRNA gene predicted gene, 39993
Tssr21884 2 168956232 to 168956256 24 + TSS region transcription start site region 21884
Tssr21885 2 168961035 to 168961048 13 + TSS region transcription start site region 21885
Tssr21886 2 168962145 to 168962162 17 + TSS region transcription start site region 21886
Tssr27891 2 168970111 to 168970130 19 - TSS region transcription start site region 27891
Cpgi12785 2 168970114 to 168970526 412 CpG island CpG island 12785
Tssr21887 2 168970455 to 168970477 22 + TSS region transcription start site region 21887
Tssr21888 2 168978241 to 168978242 1 + TSS region transcription start site region 21888
Tssr21889 2 168978250 to 168978260 10 + TSS region transcription start site region 21889
Tssr21890 2 168978262 to 168978281 19 + TSS region transcription start site region 21890
1700017J07Rik 2 168978269 to 168978906 637 + lincRNA gene RIKEN cDNA 1700017J07 gene
Tssr21891 2 168978294 to 168978302 8 + TSS region transcription start site region 21891
Gm33622 2 168980121 to 168987373 7252 + lncRNA gene predicted gene, 33622
Tssr21892 2 168981158 to 168981196 38 + TSS region transcription start site region 21892
Gm4721 2 168983264 to 168986191 2927 - pseudogene predicted gene 4721
Gm14260 2 168986566 to 168987373 807 - lincRNA gene predicted gene 14260
Cpgi12786 2 168993157 to 168993346 189 CpG island CpG island 12786
Tssr21893 2 169006008 to 169006071 63 + TSS region transcription start site region 21893
Cpgi12787 2 169008840 to 169009086 246 CpG island CpG island 12787
Gm9873 2 169020025 to 169021385 1360 + lincRNA gene predicted gene 9873
D2Mit500 2 169057844 to 169057963 119 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 500
Gm26469 2 169061120 to 169061240 120 + miRNA gene predicted gene, 26469
4933407C09Rik 2 169080641 to 169082059 1418 unclassified gene RIKEN cDNA 4933407C09 gene
Tssr27892 2 169081772 to 169081783 11 - TSS region transcription start site region 27892
Gm14258 2 169106453 to 169110415 3962 + lincRNA gene predicted gene 14258
Tssr27893 2 169155701 to 169155728 27 - TSS region transcription start site region 27893
Tssr27894 2 169233230 to 169233232 2 - TSS region transcription start site region 27894
9430093N23Rik 2 169234991 to 169237770 2779 + lincRNA gene RIKEN cDNA 9430093N23 gene
Gm33806 2 169240393 to 169246135 5742 + lncRNA gene predicted gene, 33806
D2Mit343 2 169275857 to 169276004 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 343
D2Dcr117 2 169275877 to 169276040 163 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 117
D2Mit146 2 169283825 to 169283973 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 146
Gm46788 2 169295771 to 169298456 2685 - lncRNA gene predicted gene, 46788
Cpgi12788 2 169297970 to 169298250 280 CpG island CpG island 12788
Gm39994 2 169374780 to 169379916 5136 + lncRNA gene predicted gene, 39994
Gm14250 2 169389081 to 169395524 6443 + lincRNA gene predicted gene 14250
4930529I22Rik 2 169399335 to 169405459 6124 - lincRNA gene RIKEN cDNA 4930529I22 gene
Tssr27895 2 169403367 to 169403369 2 - TSS region transcription start site region 27895
Tssr27896 2 169405435 to 169405473 38 - TSS region transcription start site region 27896
Gm34112 2 169451140 to 169494980 43840 - lncRNA gene predicted gene, 34112
Gm14249 2 169461769 to 169483368 21599 + lincRNA gene predicted gene 14249
Cpgi12789 2 169524585 to 169524841 256 CpG island CpG island 12789
Cpgi12790 2 169540965 to 169541245 280 CpG island CpG island 12790
Gm11011 2 169582845 to 169587745 4900 - protein coding gene predicted gene 11011
Tssr21894 2 169599795 to 169599796 1 + TSS region transcription start site region 21894
Gm34294 2 169624056 to 169628318 4262 - protein coding gene predicted gene, 34294
Tssr21895 2 169632496 to 169632514 18 + TSS region transcription start site region 21895
Tssr21896 2 169632692 to 169632747 55 + TSS region transcription start site region 21896
Cpgi12791 2 169632708 to 169633116 408 CpG island CpG island 12791
Tssr21897 2 169632852 to 169632897 45 + TSS region transcription start site region 21897
Tssr21898 2 169632996 to 169633016 20 + TSS region transcription start site region 21898
Tshz2 2 169633013 to 170071816 438803 + protein coding gene teashirt zinc finger family member 2
Tssr21899 2 169633019 to 169633055 36 + TSS region transcription start site region 21899
Tssr21900 2 169633093 to 169633103 10 + TSS region transcription start site region 21900
Tssr21901 2 169633299 to 169633332 33 + TSS region transcription start site region 21901
Tssr21902 2 169633338 to 169633359 21 + TSS region transcription start site region 21902
Cpgi12792 2 169633343 to 169634192 849 CpG island CpG island 12792
Tssr21903 2 169633517 to 169633529 12 + TSS region transcription start site region 21903
Gm26883 2 169633646 to 169888503 254857 - lincRNA gene predicted gene, 26883
Tssr21904 2 169641121 to 169641146 25 + TSS region transcription start site region 21904
Gm39997 2 169643975 to 169645786 1811 + lncRNA gene predicted gene, 39997
Tssr21905 2 169664922 to 169664938 16 + TSS region transcription start site region 21905
Gm34344 2 169665610 to 169667260 1650 - lncRNA gene predicted gene, 34344
Tssr21906 2 169684286 to 169684290 4 + TSS region transcription start site region 21906
Tssr27897 2 169686887 to 169686892 5 - TSS region transcription start site region 27897
Tssr21907 2 169699396 to 169699403 7 + TSS region transcription start site region 21907
Tssr21908 2 169708271 to 169708275 4 + TSS region transcription start site region 21908
Tssr21909 2 169723962 to 169723977 15 + TSS region transcription start site region 21909
Tssr21910 2 169726050 to 169726054 4 + TSS region transcription start site region 21910
Cpgi12793 2 169762145 to 169762413 268 CpG island CpG island 12793
Cpgi12794 2 169783301 to 169783600 299 CpG island CpG island 12794
Tssr27898 2 169888023 to 169888040 17 - TSS region transcription start site region 27898
Cpgi12795 2 169912378 to 169912858 480 CpG island CpG island 12795
Tssr21911 2 169915089 to 169915098 9 + TSS region transcription start site region 21911
Tssr21912 2 169915116 to 169915130 14 + TSS region transcription start site region 21912
Tssr776 2 169949468 to 169949472 4 + TSS region transcription start site region 776
Pwbwq3 2 169952882 to 179278998 9326116 QTL pre-weaning body weight QTL 3
AY702102 2 169962015 to 169963187 1172 - lncRNA gene cDNA sequence AY702102
Tssr27899 2 169963075 to 169963082 7 - TSS region transcription start site region 27899
Tssr27900 2 169963169 to 169963201 32 - TSS region transcription start site region 27900
Tssr27901 2 169970576 to 169970585 9 - TSS region transcription start site region 27901
Tssr21913 2 169970790 to 169970802 12 + TSS region transcription start site region 21913
Tssr21914 2 169970807 to 169970819 12 + TSS region transcription start site region 21914
A630075F10Rik 2 170061240 to 170070671 9431 - lincRNA gene RIKEN cDNA A630075F10 gene
D2Mit415 2 170092356 to 170092444 88 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 415
Cpgi12796 2 170094330 to 170094830 500 CpG island CpG island 12796
Zfp217 2 170108643 to 170148103 39460 - protein coding gene zinc finger protein 217
Tssr27902 2 170108908 to 170108917 9 - TSS region transcription start site region 27902
D2Mit112 2 170116443 to 170116570 127 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 112
Tssr27903 2 170122077 to 170122084 7 - TSS region transcription start site region 27903
Cpgi12797 2 170130226 to 170131680 1454 CpG island CpG island 12797
Tssr27904 2 170131156 to 170131184 28 - TSS region transcription start site region 27904
Tssr21915 2 170131344 to 170131362 18 + TSS region transcription start site region 21915
Tssr27905 2 170132037 to 170132051 14 - TSS region transcription start site region 27905
Tssr21916 2 170132379 to 170132386 7 + TSS region transcription start site region 21916
Cpgi12798 2 170133353 to 170133857 504 CpG island CpG island 12798
Tssr27906 2 170133542 to 170133565 23 - TSS region transcription start site region 27906
Tssr21917 2 170133659 to 170133679 20 + TSS region transcription start site region 21917
Tssr27907 2 170134527 to 170134556 29 - TSS region transcription start site region 27907
Tssr27908 2 170134572 to 170134583 11 - TSS region transcription start site region 27908
Tssr27909 2 170141607 to 170141611 4 - TSS region transcription start site region 27909
Tssr27910 2 170142673 to 170142678 5 - TSS region transcription start site region 27910
Tssr27911 2 170151666 to 170151685 19 - TSS region transcription start site region 27911
Tssr27912 2 170151686 to 170151700 14 - TSS region transcription start site region 27912
Cpgi12799 2 170153481 to 170153921 440 CpG island CpG island 12799
Tssr27913 2 170155101 to 170155107 6 - TSS region transcription start site region 27913
Tssr21918 2 170155124 to 170155129 5 + TSS region transcription start site region 21918
Tssr27914 2 170158420 to 170158442 22 - TSS region transcription start site region 27914