Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:167891140-171054980

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370 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gnf1 2 143931525 to 169276004 25344479 QTL growth and fatness 1
Gnf3 2 152857301 to 169276004 16418703 QTL growth and fatness 3
Pwgrq3 2 160769245 to 169952882 9183637 QTL pre-weaning growth rate QTL 3
Pwbwq2 2 160769245 to 169952882 9183637 QTL pre-weaning body weight QTL 2
Hpdty 2 165822973 to 168781758 2958785 QTL hindlimb polydactyly
Cpgi12757 2 167894987 to 167895562 575 CpG island CpG island 12757
Cpgi12758 2 167899898 to 167900052 154 CpG island CpG island 12758
Tssr775 2 167924999 to 167925015 16 - TSS region transcription start site region 775
Cpgi12759 2 167931491 to 167933198 1707 CpG island CpG island 12759
Tssr21855 2 167932023 to 167932064 41 + TSS region transcription start site region 21855
Ptpn1 2 167932057 to 167979385 47328 + protein coding gene protein tyrosine phosphatase, non-receptor type 1
Tssr21856 2 167932336 to 167932379 43 + TSS region transcription start site region 21856
Tssr21857 2 167932383 to 167932400 17 + TSS region transcription start site region 21857
Tssr21858 2 167936474 to 167936483 9 + TSS region transcription start site region 21858
Tssr21859 2 167940798 to 167940802 4 + TSS region transcription start site region 21859
Ripor3 2 167980164 to 168010618 30454 - protein coding gene RIPOR family member 3
Tssr27813 2 167988267 to 167988291 24 - TSS region transcription start site region 27813
Tssr27814 2 167997664 to 167997697 33 - TSS region transcription start site region 27814
Tssr27815 2 168003492 to 168003503 11 - TSS region transcription start site region 27815
Tssr27816 2 168003559 to 168003566 7 - TSS region transcription start site region 27816
Gm14236 2 168010529 to 168011506 977 + antisense lncRNA gene predicted gene 14236
Tssr27817 2 168010655 to 168010663 8 - TSS region transcription start site region 27817
Tssr27818 2 168010702 to 168010713 11 - TSS region transcription start site region 27818
D2Mit291.1 2 168032273 to 168032444 171 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 291.1
Tssr27819 2 168039410 to 168039415 5 - TSS region transcription start site region 27819
D2Dcr130 2 168047779 to 168047876 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 130
Tssr27820 2 168050076 to 168050081 5 - TSS region transcription start site region 27820
Cpgi12760 2 168050116 to 168050910 794 CpG island CpG island 12760
Tssr27821 2 168050352 to 168050364 12 - TSS region transcription start site region 27821
Tssr27822 2 168050389 to 168050400 11 - TSS region transcription start site region 27822
Tssr27823 2 168050408 to 168050428 20 - TSS region transcription start site region 27823
Tssr27824 2 168051946 to 168051952 6 - TSS region transcription start site region 27824
Gm33108 2 168060648 to 168069443 8795 - lncRNA gene predicted gene, 33108
Gm24327 2 168064820 to 168064897 77 - miRNA gene predicted gene, 24327
Tssr27825 2 168068254 to 168068303 49 - TSS region transcription start site region 27825
Gm39990 2 168078412 to 168080726 2314 - lncRNA gene predicted gene, 39990
Tssr21860 2 168078748 to 168078760 12 + TSS region transcription start site region 21860
Cpgi12761 2 168079969 to 168082066 2097 CpG island CpG island 12761
Tssr21861 2 168080882 to 168080910 28 + TSS region transcription start site region 21861
Pard6b 2 168081004 to 168101203 20199 + protein coding gene par-6 family cell polarity regulator beta
Tssr21862 2 168081024 to 168081035 11 + TSS region transcription start site region 21862
Tssr21863 2 168081103 to 168081122 19 + TSS region transcription start site region 21863
Tssr21864 2 168081139 to 168081155 16 + TSS region transcription start site region 21864
Tssr21865 2 168081281 to 168081301 20 + TSS region transcription start site region 21865
D2Mit111 2 168087806 to 168087954 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 111
Cpgi12762 2 168106667 to 168107367 700 CpG island CpG island 12762
Cpgi12763 2 168117123 to 168117954 831 CpG island CpG island 12763
Tssr27826 2 168119170 to 168119193 23 - TSS region transcription start site region 27826
Tssr21866 2 168125710 to 168125716 6 + TSS region transcription start site region 21866
Gm46787 2 168144596 to 168146001 1405 + lncRNA gene predicted gene, 46787
Gm39991 2 168147417 to 168149134 1717 + lncRNA gene predicted gene, 39991
Gm14235 2 168148017 to 168153533 5516 - lincRNA gene predicted gene 14235
Cpgi12764 2 168148437 to 168148800 363 CpG island CpG island 12764
E130018N17Rik 2 168152603 to 168154513 1910 - lincRNA gene RIKEN cDNA E130018N17 gene
Tssr21867 2 168159066 to 168159077 11 + TSS region transcription start site region 21867
Tssr21868 2 168159079 to 168159088 9 + TSS region transcription start site region 21868
Gm33185 2 168161211 to 168162323 1112 + lncRNA gene predicted gene, 33185
Gm24561 2 168178158 to 168178252 94 - miRNA gene predicted gene, 24561
Adnp 2 168180986 to 168207112 26126 - protein coding gene activity-dependent neuroprotective protein
Gm20716 2 168180986 to 168230364 49378 - protein coding gene predicted gene 20716
Tssr27827 2 168184105 to 168184128 23 - TSS region transcription start site region 27827
Tssr27828 2 168186097 to 168186101 4 - TSS region transcription start site region 27828
D2Ertd93e 2 168202269 to 168202490 221 DNA segment DNA segment, Chr 2, ERATO Doi 93, expressed
Tssr27829 2 168204676 to 168204690 14 - TSS region transcription start site region 27829
Cpgi12765 2 168206143 to 168207722 1579 CpG island CpG island 12765
Tssr27830 2 168206754 to 168206759 5 - TSS region transcription start site region 27830
Tssr27831 2 168206800 to 168206809 9 - TSS region transcription start site region 27831
Tssr27832 2 168206875 to 168206888 13 - TSS region transcription start site region 27832
Tssr27833 2 168207005 to 168207014 9 - TSS region transcription start site region 27833
Tssr27834 2 168207016 to 168207025 9 - TSS region transcription start site region 27834
Tssr27835 2 168207063 to 168207142 79 - TSS region transcription start site region 27835
Tssr27836 2 168207263 to 168207302 39 - TSS region transcription start site region 27836
Dpm1 2 168209048 to 168230379 21331 - protein coding gene dolichol-phosphate (beta-D) mannosyltransferase 1
D2Ertd63e 2 168210955 to 168211177 222 DNA segment DNA segment, Chr 2, ERATO Doi 63, expressed
Cpgi12766 2 168229674 to 168231970 2296 CpG island CpG island 12766
Tssr27837 2 168230069 to 168230113 44 - TSS region transcription start site region 27837
Tssr27838 2 168230323 to 168230334 11 - TSS region transcription start site region 27838
Tssr27839 2 168230353 to 168230386 33 - TSS region transcription start site region 27839
Tssr27840 2 168230575 to 168230604 29 - TSS region transcription start site region 27840
Tssr21869 2 168230597 to 168230639 42 + TSS region transcription start site region 21869
Mocs3 2 168230622 to 168232303 1681 + protein coding gene molybdenum cofactor synthesis 3
Tssr27841 2 168231089 to 168231105 16 - TSS region transcription start site region 27841
Tssr27842 2 168231121 to 168231132 11 - TSS region transcription start site region 27842
Tssr21870 2 168231195 to 168231217 22 + TSS region transcription start site region 21870
Tssr21871 2 168231220 to 168231225 5 + TSS region transcription start site region 21871
Tssr21872 2 168231229 to 168231239 10 + TSS region transcription start site region 21872
Tssr21873 2 168231261 to 168231267 6 + TSS region transcription start site region 21873
Gm14237 2 168242001 to 168242430 429 - pseudogene predicted gene 14237
Kcng1 2 168260117 to 168281736 21619 - protein coding gene potassium voltage-gated channel, subfamily G, member 1
Cpgi12767 2 168262585 to 168263215 630 CpG island CpG island 12767
Tssr27843 2 168262832 to 168262866 34 - TSS region transcription start site region 27843
Cpgi12768 2 168268372 to 168269220 848 CpG island CpG island 12768
Cpgi12769 2 168280437 to 168281750 1313 CpG island CpG island 12769
Tssr27844 2 168281096 to 168281118 22 - TSS region transcription start site region 27844
Tssr27845 2 168281120 to 168281144 24 - TSS region transcription start site region 27845
Gm14262 2 168289019 to 168295121 6102 - lincRNA gene predicted gene 14262
Cpgi12770 2 168333733 to 168333963 230 CpG island CpG island 12770
Gm22704 2 168335700 to 168335836 136 + snoRNA gene predicted gene, 22704
Cpgi12771 2 168393444 to 168393687 243 CpG island CpG island 12771
Gm39992 2 168398622 to 168402893 4271 - lncRNA gene predicted gene, 39992
Gm33262 2 168403903 to 168404898 995 + lncRNA gene predicted gene, 33262
Gm33359 2 168407676 to 168424136 16460 + lncRNA gene predicted gene, 33359
Cpgi12772 2 168415212 to 168415418 206 CpG island CpG island 12772
Gm14234 2 168417739 to 168418574 835 - pseudogene predicted gene 14234
Gm33413 2 168439519 to 168442405 2886 + lncRNA gene predicted gene, 33413
Nfatc2 2 168476410 to 168601657 125247 - protein coding gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2
Cpgi12773 2 168479939 to 168480230 291 CpG island CpG island 12773
Tssr27846 2 168508172 to 168508221 49 - TSS region transcription start site region 27846
Tssr27847 2 168513184 to 168513200 16 - TSS region transcription start site region 27847
Tssr27848 2 168515261 to 168515273 12 - TSS region transcription start site region 27848
Tssr21874 2 168532356 to 168532372 16 + TSS region transcription start site region 21874
D2Mit414 2 168536699 to 168536807 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 414
Tssr21875 2 168549048 to 168549059 11 + TSS region transcription start site region 21875
Cpgi12774 2 168570760 to 168571598 838 CpG island CpG island 12774
Tssr27849 2 168571197 to 168571218 21 - TSS region transcription start site region 27849
Tssr27850 2 168571423 to 168571449 26 - TSS region transcription start site region 27850
Tssr21876 2 168579355 to 168579398 43 + TSS region transcription start site region 21876
Cpgi12775 2 168589678 to 168590843 1165 CpG island CpG island 12775
Tssr27851 2 168590291 to 168590302 11 - TSS region transcription start site region 27851
Tssr27852 2 168590315 to 168590372 57 - TSS region transcription start site region 27852
Tssr21877 2 168590441 to 168590476 35 + TSS region transcription start site region 21877
Cpgi12776 2 168601122 to 168602216 1094 CpG island CpG island 12776
Tssr27853 2 168601568 to 168601615 47 - TSS region transcription start site region 27853
Tssr27854 2 168601620 to 168601638 18 - TSS region transcription start site region 27854
Tssr27855 2 168601752 to 168601773 21 - TSS region transcription start site region 27855
Atp9a 2 168634438 to 168742370 107932 - protein coding gene ATPase, class II, type 9A
Mir7004 2 168640696 to 168640759 63 - miRNA gene microRNA 7004
Tssr27856 2 168670052 to 168670084 32 - TSS region transcription start site region 27856
Tssr27857 2 168670088 to 168670102 14 - TSS region transcription start site region 27857
Tssr21878 2 168670201 to 168670210 9 + TSS region transcription start site region 21878
Tssr27858 2 168670392 to 168670425 33 - TSS region transcription start site region 27858
Tssr21879 2 168670493 to 168670541 48 + TSS region transcription start site region 21879
Tssr27859 2 168712853 to 168712935 82 - TSS region transcription start site region 27859
Tssr27860 2 168722547 to 168722549 2 - TSS region transcription start site region 27860
Tssr27861 2 168734060 to 168734135 75 - TSS region transcription start site region 27861
Tssr27862 2 168734236 to 168734286 50 - TSS region transcription start site region 27862
Cpgi12777 2 168741181 to 168742555 1374 CpG island CpG island 12777
Tssr27863 2 168741752 to 168741774 22 - TSS region transcription start site region 27863
Tssr27864 2 168741850 to 168741870 20 - TSS region transcription start site region 27864
Tssr27865 2 168741898 to 168741973 75 - TSS region transcription start site region 27865
Tssr27866 2 168741976 to 168741993 17 - TSS region transcription start site region 27866
Tssr27867 2 168742100 to 168742142 42 - TSS region transcription start site region 27867
Sall4 2 168748332 to 168767201 18869 - protein coding gene spalt like transcription factor 4
Tssr27868 2 168749428 to 168749455 27 - TSS region transcription start site region 27868
Tssr27869 2 168749484 to 168749512 28 - TSS region transcription start site region 27869
Tssr27870 2 168749943 to 168749948 5 - TSS region transcription start site region 27870
Tssr27871 2 168749992 to 168750018 26 - TSS region transcription start site region 27871
Tssr27872 2 168764804 to 168764808 4 - TSS region transcription start site region 27872
Cpgi12778 2 168764991 to 168767208 2217 CpG island CpG island 12778
Tssr27873 2 168765245 to 168765261 16 - TSS region transcription start site region 27873
Tssr27874 2 168765304 to 168765315 11 - TSS region transcription start site region 27874
Tssr27875 2 168765335 to 168765361 26 - TSS region transcription start site region 27875
Tssr27876 2 168765370 to 168765441 71 - TSS region transcription start site region 27876
Tssr21880 2 168766141 to 168766147 6 + TSS region transcription start site region 21880
Gm14261 2 168766143 to 168768108 1965 + lncRNA gene predicted gene 14261
Tssr21881 2 168766544 to 168766550 6 + TSS region transcription start site region 21881
Tssr27877 2 168766641 to 168766660 19 - TSS region transcription start site region 27877
Tssr27878 2 168767036 to 168767045 9 - TSS region transcription start site region 27878
Tssr27879 2 168767062 to 168767065 3 - TSS region transcription start site region 27879
Tssr27880 2 168767076 to 168767083 7 - TSS region transcription start site region 27880
Tssr27881 2 168767091 to 168767104 13 - TSS region transcription start site region 27881
Tssr27882 2 168767136 to 168767151 15 - TSS region transcription start site region 27882
Tssr27883 2 168767159 to 168767162 3 - TSS region transcription start site region 27883
Tssr27884 2 168767190 to 168767206 16 - TSS region transcription start site region 27884
Tssr27885 2 168767286 to 168767297 11 - TSS region transcription start site region 27885
Tssr21882 2 168771725 to 168771754 29 + TSS region transcription start site region 21882
Tssr21883 2 168778632 to 168778633 1 + TSS region transcription start site region 21883
Skts13 2 168781613 to 172563406 3781793 QTL skin tumor sucseptibility 13
D2Mit229 2 168781613 to 168781758 145 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 229
Gm25214 2 168882040 to 168882168 128 - snoRNA gene predicted gene, 25214
Gm38422 2 168893337 to 168912749 19412 - protein coding gene predicted gene, 38422
Cpgi12779 2 168893947 to 168894538 591 CpG island CpG island 12779
Cpgi12780 2 168911435 to 168911790 355 CpG island CpG island 12780
Cpgi12781 2 168911878 to 168913113 1235 CpG island CpG island 12781
Zfp64 2 168925361 to 168955587 30226 - protein coding gene zinc finger protein 64
Cpgi12782 2 168925691 to 168926854 1163 CpG island CpG island 12782
Tssr27886 2 168932565 to 168932568 3 - TSS region transcription start site region 27886
Cpgi12783 2 168935030 to 168935616 586 CpG island CpG island 12783
D2Mit456 2 168936377 to 168936499 122 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 456
Bmd6 2 168936377 to 168936499 122 QTL bone mineral density 6
Cpgi12784 2 168954638 to 168955708 1070 CpG island CpG island 12784
Tssr27887 2 168955229 to 168955240 11 - TSS region transcription start site region 27887
Tssr27888 2 168955257 to 168955305 48 - TSS region transcription start site region 27888
Tssr27889 2 168955514 to 168955525 11 - TSS region transcription start site region 27889
Tssr27890 2 168955529 to 168955593 64 - TSS region transcription start site region 27890
Gm39993 2 168955702 to 168958248 2546 + lncRNA gene predicted gene, 39993
Tssr21884 2 168956232 to 168956256 24 + TSS region transcription start site region 21884
Tssr21885 2 168961035 to 168961048 13 + TSS region transcription start site region 21885
Tssr21886 2 168962145 to 168962162 17 + TSS region transcription start site region 21886
Tssr27891 2 168970111 to 168970130 19 - TSS region transcription start site region 27891
Cpgi12785 2 168970114 to 168970526 412 CpG island CpG island 12785
Tssr21887 2 168970455 to 168970477 22 + TSS region transcription start site region 21887
Tssr21888 2 168978241 to 168978242 1 + TSS region transcription start site region 21888
Tssr21889 2 168978250 to 168978260 10 + TSS region transcription start site region 21889
Tssr21890 2 168978262 to 168978281 19 + TSS region transcription start site region 21890
1700017J07Rik 2 168978269 to 168978906 637 + lincRNA gene RIKEN cDNA 1700017J07 gene
Tssr21891 2 168978294 to 168978302 8 + TSS region transcription start site region 21891
Gm33622 2 168980121 to 168987373 7252 + lncRNA gene predicted gene, 33622
Tssr21892 2 168981158 to 168981196 38 + TSS region transcription start site region 21892
Gm4721 2 168983264 to 168986191 2927 - pseudogene predicted gene 4721