Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:167665291-169515302

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299 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gnf1 2 143931525 to 169276004 25344479 QTL growth and fatness 1
Gnf3 2 152857301 to 169276004 16418703 QTL growth and fatness 3
Hpdty 2 165822973 to 168781758 2958785 QTL hindlimb polydactyly
Gm14320 2 167664565 to 167667704 3139 + antisense lncRNA gene predicted gene 14320
Cpgi12753 2 167680016 to 167680283 267 CpG island CpG island 12753
Cpgi12754 2 167688088 to 167690234 2146 CpG island CpG island 12754
Tssr21829 2 167688728 to 167688765 37 + TSS region transcription start site region 21829
Tssr21830 2 167688766 to 167688793 27 + TSS region transcription start site region 21830
Cebpb 2 167688915 to 167690418 1503 + protein coding gene CCAAT/enhancer binding protein (C/EBP), beta
Tssr21831 2 167688956 to 167688973 17 + TSS region transcription start site region 21831
Tssr27790 2 167689211 to 167689239 28 - TSS region transcription start site region 27790
Tssr21832 2 167690273 to 167690296 23 + TSS region transcription start site region 21832
Tssr21833 2 167690717 to 167690737 20 + TSS region transcription start site region 21833
Tssr21834 2 167690749 to 167690769 20 + TSS region transcription start site region 21834
A530013C23Rik 2 167690759 to 167697413 6654 + lincRNA gene RIKEN cDNA A530013C23 gene
Tssr21835 2 167693454 to 167693461 7 + TSS region transcription start site region 21835
Tssr27791 2 167698013 to 167698034 21 - TSS region transcription start site region 27791
Tssr21836 2 167698127 to 167698153 26 + TSS region transcription start site region 21836
Tssr21837 2 167698162 to 167698199 37 + TSS region transcription start site region 21837
Tssr21838 2 167721702 to 167721726 24 + TSS region transcription start site region 21838
Tssr21839 2 167721731 to 167721756 25 + TSS region transcription start site region 21839
Gm38464 2 167725231 to 167734667 9436 + lncRNA gene predicted gene, 38464
Tssr21840 2 167742765 to 167742785 20 + TSS region transcription start site region 21840
Tssr27792 2 167743866 to 167743935 69 - TSS region transcription start site region 27792
Tssr27793 2 167744092 to 167744107 15 - TSS region transcription start site region 27793
Tssr27794 2 167744117 to 167744127 10 - TSS region transcription start site region 27794
Tssr27795 2 167744158 to 167744169 11 - TSS region transcription start site region 27795
Tssr21841 2 167744287 to 167744312 25 + TSS region transcription start site region 21841
Tssr21842 2 167750269 to 167750280 11 + TSS region transcription start site region 21842
Tssr21843 2 167753036 to 167753048 12 + TSS region transcription start site region 21843
Tssr27796 2 167753296 to 167753345 49 - TSS region transcription start site region 27796
Tssr27797 2 167753913 to 167753938 25 - TSS region transcription start site region 27797
Tssr21844 2 167754243 to 167754260 17 + TSS region transcription start site region 21844
Tssr21845 2 167760218 to 167760250 32 + TSS region transcription start site region 21845
Tssr21846 2 167760348 to 167760352 4 + TSS region transcription start site region 21846
Tssr27798 2 167765287 to 167765301 14 - TSS region transcription start site region 27798
Gm32287 2 167769108 to 167777716 8608 - lncRNA gene predicted gene, 32287
Tssr27799 2 167770444 to 167770476 32 - TSS region transcription start site region 27799
Tssr27800 2 167773043 to 167773052 9 - TSS region transcription start site region 27800
Tssr770 2 167773127 to 167773134 7 + TSS region transcription start site region 770
Tssr21847 2 167773151 to 167773159 8 + TSS region transcription start site region 21847
Tssr21848 2 167773180 to 167773192 12 + TSS region transcription start site region 21848
Tssr27801 2 167774950 to 167774969 19 - TSS region transcription start site region 27801
Tssr771 2 167775155 to 167775163 8 - TSS region transcription start site region 771
Tssr27802 2 167775180 to 167775187 7 - TSS region transcription start site region 27802
Tssr27803 2 167775204 to 167775216 12 - TSS region transcription start site region 27803
Tssr27804 2 167775390 to 167775401 11 - TSS region transcription start site region 27804
Tssr27805 2 167775467 to 167775479 12 - TSS region transcription start site region 27805
Tssr21849 2 167775529 to 167775553 24 + TSS region transcription start site region 21849
Tssr772 2 167775670 to 167775695 25 + TSS region transcription start site region 772
Tssr773 2 167776755 to 167776765 10 + TSS region transcription start site region 773
Tssr27806 2 167777269 to 167777282 13 - TSS region transcription start site region 27806
Cpgi12755 2 167777433 to 167778002 569 CpG island CpG island 12755
Gm14321 2 167777467 to 167782569 5102 + lincRNA gene predicted gene 14321
Tssr21850 2 167777475 to 167777513 38 + TSS region transcription start site region 21850
Tssr27807 2 167777898 to 167777910 12 - TSS region transcription start site region 27807
Tssr27808 2 167777920 to 167777934 14 - TSS region transcription start site region 27808
Tssr774 2 167777996 to 167778007 11 - TSS region transcription start site region 774
Tssr21851 2 167778092 to 167778106 14 + TSS region transcription start site region 21851
Tssr21852 2 167778157 to 167778169 12 + TSS region transcription start site region 21852
9230111E07Rik 2 167782053 to 167783486 1433 + lincRNA gene RIKEN cDNA 9230111E07 gene
Gm32513 2 167789368 to 167796286 6918 + lncRNA gene predicted gene, 32513
Gm32600 2 167815406 to 167821085 5679 - lncRNA gene predicted gene, 32600
1200007C13Rik 2 167827693 to 167833646 5953 - lincRNA gene RIKEN cDNA 1200007C13 gene
Cpgi12756 2 167831195 to 167831466 271 CpG island CpG island 12756
Tssr27809 2 167833642 to 167833648 6 - TSS region transcription start site region 27809
Gm32685 2 167836113 to 167839152 3039 + lncRNA gene predicted gene, 32685
Gm32747 2 167839218 to 167840015 797 - lncRNA gene predicted gene, 32747
Gm32800 2 167847197 to 167847980 783 - lncRNA gene predicted gene, 32800
Tssr27810 2 167847823 to 167847834 11 - TSS region transcription start site region 27810
Gm32845 2 167848407 to 167858426 10019 + lncRNA gene predicted gene, 32845
Gm33033 2 167858300 to 167860617 2317 - lncRNA gene predicted gene, 33033
Gm14319 2 167858585 to 167862542 3957 + lincRNA gene predicted gene 14319
Tssr27811 2 167861264 to 167861266 2 - TSS region transcription start site region 27811
Tssr21853 2 167863095 to 167863124 29 + TSS region transcription start site region 21853
Gm32928 2 167870960 to 167873118 2158 - lncRNA gene predicted gene, 32928
Tssr21854 2 167871760 to 167871794 34 + TSS region transcription start site region 21854
Tssr27812 2 167877596 to 167877612 16 - TSS region transcription start site region 27812
Cpgi12757 2 167894987 to 167895562 575 CpG island CpG island 12757
Cpgi12758 2 167899898 to 167900052 154 CpG island CpG island 12758
Tssr775 2 167924999 to 167925015 16 - TSS region transcription start site region 775
Cpgi12759 2 167931491 to 167933198 1707 CpG island CpG island 12759
Tssr21855 2 167932023 to 167932064 41 + TSS region transcription start site region 21855
Ptpn1 2 167932057 to 167979385 47328 + protein coding gene protein tyrosine phosphatase, non-receptor type 1
Tssr21856 2 167932336 to 167932379 43 + TSS region transcription start site region 21856
Tssr21857 2 167932383 to 167932400 17 + TSS region transcription start site region 21857
Tssr21858 2 167936474 to 167936483 9 + TSS region transcription start site region 21858
Tssr21859 2 167940798 to 167940802 4 + TSS region transcription start site region 21859
Ripor3 2 167980164 to 168010618 30454 - protein coding gene RIPOR family member 3
Tssr27813 2 167988267 to 167988291 24 - TSS region transcription start site region 27813
Tssr27814 2 167997664 to 167997697 33 - TSS region transcription start site region 27814
Tssr27815 2 168003492 to 168003503 11 - TSS region transcription start site region 27815
Tssr27816 2 168003559 to 168003566 7 - TSS region transcription start site region 27816
Gm14236 2 168010529 to 168011506 977 + antisense lncRNA gene predicted gene 14236
Tssr27817 2 168010655 to 168010663 8 - TSS region transcription start site region 27817
Tssr27818 2 168010702 to 168010713 11 - TSS region transcription start site region 27818
D2Mit291.1 2 168032273 to 168032444 171 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 291.1
Tssr27819 2 168039410 to 168039415 5 - TSS region transcription start site region 27819
D2Dcr130 2 168047779 to 168047876 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 130
Tssr27820 2 168050076 to 168050081 5 - TSS region transcription start site region 27820
Cpgi12760 2 168050116 to 168050910 794 CpG island CpG island 12760
Tssr27821 2 168050352 to 168050364 12 - TSS region transcription start site region 27821
Tssr27822 2 168050389 to 168050400 11 - TSS region transcription start site region 27822
Tssr27823 2 168050408 to 168050428 20 - TSS region transcription start site region 27823
Tssr27824 2 168051946 to 168051952 6 - TSS region transcription start site region 27824
Gm33108 2 168060648 to 168069443 8795 - lncRNA gene predicted gene, 33108
Gm24327 2 168064820 to 168064897 77 - miRNA gene predicted gene, 24327
Tssr27825 2 168068254 to 168068303 49 - TSS region transcription start site region 27825
Gm39990 2 168078412 to 168080726 2314 - lncRNA gene predicted gene, 39990
Tssr21860 2 168078748 to 168078760 12 + TSS region transcription start site region 21860
Cpgi12761 2 168079969 to 168082066 2097 CpG island CpG island 12761
Tssr21861 2 168080882 to 168080910 28 + TSS region transcription start site region 21861
Pard6b 2 168081004 to 168101203 20199 + protein coding gene par-6 family cell polarity regulator beta
Tssr21862 2 168081024 to 168081035 11 + TSS region transcription start site region 21862
Tssr21863 2 168081103 to 168081122 19 + TSS region transcription start site region 21863
Tssr21864 2 168081139 to 168081155 16 + TSS region transcription start site region 21864
Tssr21865 2 168081281 to 168081301 20 + TSS region transcription start site region 21865
D2Mit111 2 168087806 to 168087954 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 111
Cpgi12762 2 168106667 to 168107367 700 CpG island CpG island 12762
Cpgi12763 2 168117123 to 168117954 831 CpG island CpG island 12763
Tssr27826 2 168119170 to 168119193 23 - TSS region transcription start site region 27826
Tssr21866 2 168125710 to 168125716 6 + TSS region transcription start site region 21866
Gm46787 2 168144596 to 168146001 1405 + lncRNA gene predicted gene, 46787
Gm39991 2 168147417 to 168149134 1717 + lncRNA gene predicted gene, 39991
Gm14235 2 168148017 to 168153533 5516 - lincRNA gene predicted gene 14235
Cpgi12764 2 168148437 to 168148800 363 CpG island CpG island 12764
E130018N17Rik 2 168152603 to 168154513 1910 - lincRNA gene RIKEN cDNA E130018N17 gene
Tssr21867 2 168159066 to 168159077 11 + TSS region transcription start site region 21867
Tssr21868 2 168159079 to 168159088 9 + TSS region transcription start site region 21868
Gm33185 2 168161211 to 168162323 1112 + lncRNA gene predicted gene, 33185
Gm24561 2 168178158 to 168178252 94 - miRNA gene predicted gene, 24561
Gm20716 2 168180986 to 168230364 49378 - protein coding gene predicted gene 20716
Adnp 2 168180986 to 168207112 26126 - protein coding gene activity-dependent neuroprotective protein
Tssr27827 2 168184105 to 168184128 23 - TSS region transcription start site region 27827
Tssr27828 2 168186097 to 168186101 4 - TSS region transcription start site region 27828
D2Ertd93e 2 168202269 to 168202490 221 DNA segment DNA segment, Chr 2, ERATO Doi 93, expressed
Tssr27829 2 168204676 to 168204690 14 - TSS region transcription start site region 27829
Cpgi12765 2 168206143 to 168207722 1579 CpG island CpG island 12765
Tssr27830 2 168206754 to 168206759 5 - TSS region transcription start site region 27830
Tssr27831 2 168206800 to 168206809 9 - TSS region transcription start site region 27831
Tssr27832 2 168206875 to 168206888 13 - TSS region transcription start site region 27832
Tssr27833 2 168207005 to 168207014 9 - TSS region transcription start site region 27833
Tssr27834 2 168207016 to 168207025 9 - TSS region transcription start site region 27834
Tssr27835 2 168207063 to 168207142 79 - TSS region transcription start site region 27835
Tssr27836 2 168207263 to 168207302 39 - TSS region transcription start site region 27836
Dpm1 2 168209048 to 168230379 21331 - protein coding gene dolichol-phosphate (beta-D) mannosyltransferase 1
D2Ertd63e 2 168210955 to 168211177 222 DNA segment DNA segment, Chr 2, ERATO Doi 63, expressed
Cpgi12766 2 168229674 to 168231970 2296 CpG island CpG island 12766
Tssr27837 2 168230069 to 168230113 44 - TSS region transcription start site region 27837
Tssr27838 2 168230323 to 168230334 11 - TSS region transcription start site region 27838
Tssr27839 2 168230353 to 168230386 33 - TSS region transcription start site region 27839
Tssr27840 2 168230575 to 168230604 29 - TSS region transcription start site region 27840
Tssr21869 2 168230597 to 168230639 42 + TSS region transcription start site region 21869
Mocs3 2 168230622 to 168232303 1681 + protein coding gene molybdenum cofactor synthesis 3
Tssr27841 2 168231089 to 168231105 16 - TSS region transcription start site region 27841
Tssr27842 2 168231121 to 168231132 11 - TSS region transcription start site region 27842
Tssr21870 2 168231195 to 168231217 22 + TSS region transcription start site region 21870
Tssr21871 2 168231220 to 168231225 5 + TSS region transcription start site region 21871
Tssr21872 2 168231229 to 168231239 10 + TSS region transcription start site region 21872
Tssr21873 2 168231261 to 168231267 6 + TSS region transcription start site region 21873
Gm14237 2 168242001 to 168242430 429 - pseudogene predicted gene 14237
Kcng1 2 168260117 to 168281736 21619 - protein coding gene potassium voltage-gated channel, subfamily G, member 1
Cpgi12767 2 168262585 to 168263215 630 CpG island CpG island 12767
Tssr27843 2 168262832 to 168262866 34 - TSS region transcription start site region 27843
Cpgi12768 2 168268372 to 168269220 848 CpG island CpG island 12768
Cpgi12769 2 168280437 to 168281750 1313 CpG island CpG island 12769
Tssr27844 2 168281096 to 168281118 22 - TSS region transcription start site region 27844
Tssr27845 2 168281120 to 168281144 24 - TSS region transcription start site region 27845
Gm14262 2 168289019 to 168295121 6102 - lincRNA gene predicted gene 14262
Cpgi12770 2 168333733 to 168333963 230 CpG island CpG island 12770
Gm22704 2 168335700 to 168335836 136 + snoRNA gene predicted gene, 22704
Cpgi12771 2 168393444 to 168393687 243 CpG island CpG island 12771
Gm39992 2 168398622 to 168402893 4271 - lncRNA gene predicted gene, 39992
Gm33262 2 168403903 to 168404898 995 + lncRNA gene predicted gene, 33262
Gm33359 2 168407676 to 168424136 16460 + lncRNA gene predicted gene, 33359
Cpgi12772 2 168415212 to 168415418 206 CpG island CpG island 12772
Gm14234 2 168417739 to 168418574 835 - pseudogene predicted gene 14234
Gm33413 2 168439519 to 168442405 2886 + lncRNA gene predicted gene, 33413
Nfatc2 2 168476410 to 168601657 125247 - protein coding gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2
Cpgi12773 2 168479939 to 168480230 291 CpG island CpG island 12773
Tssr27846 2 168508172 to 168508221 49 - TSS region transcription start site region 27846
Tssr27847 2 168513184 to 168513200 16 - TSS region transcription start site region 27847
Tssr27848 2 168515261 to 168515273 12 - TSS region transcription start site region 27848
Tssr21874 2 168532356 to 168532372 16 + TSS region transcription start site region 21874
D2Mit414 2 168536699 to 168536807 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 414
Tssr21875 2 168549048 to 168549059 11 + TSS region transcription start site region 21875
Cpgi12774 2 168570760 to 168571598 838 CpG island CpG island 12774
Tssr27849 2 168571197 to 168571218 21 - TSS region transcription start site region 27849
Tssr27850 2 168571423 to 168571449 26 - TSS region transcription start site region 27850
Tssr21876 2 168579355 to 168579398 43 + TSS region transcription start site region 21876
Cpgi12775 2 168589678 to 168590843 1165 CpG island CpG island 12775
Tssr27851 2 168590291 to 168590302 11 - TSS region transcription start site region 27851
Tssr27852 2 168590315 to 168590372 57 - TSS region transcription start site region 27852
Tssr21877 2 168590441 to 168590476 35 + TSS region transcription start site region 21877
Cpgi12776 2 168601122 to 168602216 1094 CpG island CpG island 12776
Tssr27853 2 168601568 to 168601615 47 - TSS region transcription start site region 27853
Tssr27854 2 168601620 to 168601638 18 - TSS region transcription start site region 27854
Tssr27855 2 168601752 to 168601773 21 - TSS region transcription start site region 27855
Atp9a 2 168634438 to 168742370 107932 - protein coding gene ATPase, class II, type 9A
Mir7004 2 168640696 to 168640759 63 - miRNA gene microRNA 7004