Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:167458866-168028935

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153 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc9a8 2 167421712 to 167477000 55288 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 8
Cpgi12740 2 167471365 to 167471615 250 CpG island CpG island 12740
Spata2 2 167481136 to 167492874 11738 - protein coding gene spermatogenesis associated 2
Tssr27775 2 167483319 to 167483347 28 - TSS region transcription start site region 27775
Cpgi12741 2 167483370 to 167483708 338 CpG island CpG island 12741
Cpgi12742 2 167484157 to 167484398 241 CpG island CpG island 12742
Cpgi12743 2 167485262 to 167485443 181 CpG island CpG island 12743
Tssr27776 2 167485649 to 167485658 9 - TSS region transcription start site region 27776
Cpgi12744 2 167491907 to 167493403 1496 CpG island CpG island 12744
Rnf114 2 167492645 to 167516169 23524 + protein coding gene ring finger protein 114
Tssr27777 2 167492826 to 167492891 65 - TSS region transcription start site region 27777
Cpgi12745 2 167502973 to 167504540 1567 CpG island CpG island 12745
Tssr21812 2 167503207 to 167503224 17 + TSS region transcription start site region 21812
Tssr21813 2 167503229 to 167503238 9 + TSS region transcription start site region 21813
Tssr21814 2 167503414 to 167503461 47 + TSS region transcription start site region 21814
Tssr21815 2 167504127 to 167504139 12 + TSS region transcription start site region 21815
Tssr21816 2 167504141 to 167504150 9 + TSS region transcription start site region 21816
Tssr21817 2 167504157 to 167504168 11 + TSS region transcription start site region 21817
Tssr21818 2 167504198 to 167504214 16 + TSS region transcription start site region 21818
Gm11474 2 167535166 to 167535442 276 - pseudogene predicted gene 11474
Cpgi12746 2 167537743 to 167539246 1503 CpG island CpG island 12746
Tssr21819 2 167538192 to 167538210 18 + TSS region transcription start site region 21819
Snai1 2 167538195 to 167542814 4619 + protein coding gene snail family zinc finger 1
Tssr21820 2 167539782 to 167539787 5 + TSS region transcription start site region 21820
Tssr27778 2 167543628 to 167543634 6 - TSS region transcription start site region 27778
Gm11476 2 167553314 to 167607845 54531 + lncRNA gene predicted gene 11476
Cpgi12747 2 167559410 to 167559732 322 CpG island CpG island 12747
Cpgi12748 2 167565786 to 167565955 169 CpG island CpG island 12748
Gm31619 2 167571285 to 167589803 18518 - lncRNA gene predicted gene, 31619
Tssr27779 2 167577178 to 167577182 4 - TSS region transcription start site region 27779
Cpgi12749 2 167588984 to 167589184 200 CpG island CpG island 12749
Tssr769 2 167588990 to 167589001 11 + TSS region transcription start site region 769
Tssr21821 2 167589081 to 167589102 21 + TSS region transcription start site region 21821
Tssr27780 2 167589403 to 167589457 54 - TSS region transcription start site region 27780
Tssr21822 2 167589548 to 167589559 11 + TSS region transcription start site region 21822
Tssr21823 2 167589592 to 167589616 24 + TSS region transcription start site region 21823
Tssr27781 2 167590517 to 167590527 10 - TSS region transcription start site region 27781
Tssr21824 2 167590738 to 167590750 12 + TSS region transcription start site region 21824
Gm11475 2 167591395 to 167591870 475 + pseudogene predicted gene 11475
Cpgi12750 2 167597303 to 167597849 546 CpG island CpG island 12750
D2Dcr129 2 167603743 to 167603838 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 129
Ube2v1 2 167607639 to 167632016 24377 - protein coding gene ubiquitin-conjugating enzyme E2 variant 1
Gm20431 2 167607850 to 167661496 53646 - protein coding gene predicted gene 20431
Tssr21825 2 167629085 to 167629098 13 + TSS region transcription start site region 21825
Cpgi12751 2 167631172 to 167632403 1231 CpG island CpG island 12751
Tssr27782 2 167631983 to 167632009 26 - TSS region transcription start site region 27782
Gm31852 2 167632107 to 167642615 10508 + lncRNA gene predicted gene, 31852
Tssr21826 2 167642598 to 167642616 18 + TSS region transcription start site region 21826
Tssr27783 2 167643143 to 167643161 18 - TSS region transcription start site region 27783
Tmem189 2 167643225 to 167661544 18319 - protein coding gene transmembrane protein 189
Tssr27784 2 167643539 to 167643564 25 - TSS region transcription start site region 27784
Tssr27785 2 167643571 to 167643583 12 - TSS region transcription start site region 27785
Tssr27786 2 167643764 to 167643802 38 - TSS region transcription start site region 27786
Tssr27787 2 167644171 to 167644184 13 - TSS region transcription start site region 27787
Gm22355 2 167644364 to 167644459 95 - miRNA gene predicted gene, 22355
Tssr27788 2 167654913 to 167654963 50 - TSS region transcription start site region 27788
Tssr21827 2 167656786 to 167656795 9 + TSS region transcription start site region 21827
Cpgi12752 2 167660832 to 167662206 1374 CpG island CpG island 12752
Tssr27789 2 167661514 to 167661591 77 - TSS region transcription start site region 27789
Tssr21828 2 167661753 to 167661767 14 + TSS region transcription start site region 21828
Gm14320 2 167664565 to 167667704 3139 + antisense lncRNA gene predicted gene 14320
Cpgi12753 2 167680016 to 167680283 267 CpG island CpG island 12753
Cpgi12754 2 167688088 to 167690234 2146 CpG island CpG island 12754
Tssr21829 2 167688728 to 167688765 37 + TSS region transcription start site region 21829
Tssr21830 2 167688766 to 167688793 27 + TSS region transcription start site region 21830
Cebpb 2 167688915 to 167690418 1503 + protein coding gene CCAAT/enhancer binding protein (C/EBP), beta
Tssr21831 2 167688956 to 167688973 17 + TSS region transcription start site region 21831
Tssr27790 2 167689211 to 167689239 28 - TSS region transcription start site region 27790
Tssr21832 2 167690273 to 167690296 23 + TSS region transcription start site region 21832
Tssr21833 2 167690717 to 167690737 20 + TSS region transcription start site region 21833
Tssr21834 2 167690749 to 167690769 20 + TSS region transcription start site region 21834
A530013C23Rik 2 167690759 to 167697413 6654 + lincRNA gene RIKEN cDNA A530013C23 gene
Tssr21835 2 167693454 to 167693461 7 + TSS region transcription start site region 21835
Tssr27791 2 167698013 to 167698034 21 - TSS region transcription start site region 27791
Tssr21836 2 167698127 to 167698153 26 + TSS region transcription start site region 21836
Tssr21837 2 167698162 to 167698199 37 + TSS region transcription start site region 21837
Tssr21838 2 167721702 to 167721726 24 + TSS region transcription start site region 21838
Tssr21839 2 167721731 to 167721756 25 + TSS region transcription start site region 21839
Gm38464 2 167725231 to 167734667 9436 + lncRNA gene predicted gene, 38464
Tssr21840 2 167742765 to 167742785 20 + TSS region transcription start site region 21840
Tssr27792 2 167743866 to 167743935 69 - TSS region transcription start site region 27792
Tssr27793 2 167744092 to 167744107 15 - TSS region transcription start site region 27793
Tssr27794 2 167744117 to 167744127 10 - TSS region transcription start site region 27794
Tssr27795 2 167744158 to 167744169 11 - TSS region transcription start site region 27795
Tssr21841 2 167744287 to 167744312 25 + TSS region transcription start site region 21841
Tssr21842 2 167750269 to 167750280 11 + TSS region transcription start site region 21842
Tssr21843 2 167753036 to 167753048 12 + TSS region transcription start site region 21843
Tssr27796 2 167753296 to 167753345 49 - TSS region transcription start site region 27796
Tssr27797 2 167753913 to 167753938 25 - TSS region transcription start site region 27797
Tssr21844 2 167754243 to 167754260 17 + TSS region transcription start site region 21844
Tssr21845 2 167760218 to 167760250 32 + TSS region transcription start site region 21845
Tssr21846 2 167760348 to 167760352 4 + TSS region transcription start site region 21846
Tssr27798 2 167765287 to 167765301 14 - TSS region transcription start site region 27798
Gm32287 2 167769108 to 167777716 8608 - lncRNA gene predicted gene, 32287
Tssr27799 2 167770444 to 167770476 32 - TSS region transcription start site region 27799
Tssr27800 2 167773043 to 167773052 9 - TSS region transcription start site region 27800
Tssr770 2 167773127 to 167773134 7 + TSS region transcription start site region 770
Tssr21847 2 167773151 to 167773159 8 + TSS region transcription start site region 21847
Tssr21848 2 167773180 to 167773192 12 + TSS region transcription start site region 21848
Tssr27801 2 167774950 to 167774969 19 - TSS region transcription start site region 27801
Tssr771 2 167775155 to 167775163 8 - TSS region transcription start site region 771
Tssr27802 2 167775180 to 167775187 7 - TSS region transcription start site region 27802
Tssr27803 2 167775204 to 167775216 12 - TSS region transcription start site region 27803
Tssr27804 2 167775390 to 167775401 11 - TSS region transcription start site region 27804
Tssr27805 2 167775467 to 167775479 12 - TSS region transcription start site region 27805
Tssr21849 2 167775529 to 167775553 24 + TSS region transcription start site region 21849
Tssr772 2 167775670 to 167775695 25 + TSS region transcription start site region 772
Tssr773 2 167776755 to 167776765 10 + TSS region transcription start site region 773
Tssr27806 2 167777269 to 167777282 13 - TSS region transcription start site region 27806
Cpgi12755 2 167777433 to 167778002 569 CpG island CpG island 12755
Gm14321 2 167777467 to 167782569 5102 + lincRNA gene predicted gene 14321
Tssr21850 2 167777475 to 167777513 38 + TSS region transcription start site region 21850
Tssr27807 2 167777898 to 167777910 12 - TSS region transcription start site region 27807
Tssr27808 2 167777920 to 167777934 14 - TSS region transcription start site region 27808
Tssr774 2 167777996 to 167778007 11 - TSS region transcription start site region 774
Tssr21851 2 167778092 to 167778106 14 + TSS region transcription start site region 21851
Tssr21852 2 167778157 to 167778169 12 + TSS region transcription start site region 21852
9230111E07Rik 2 167782053 to 167783486 1433 + lincRNA gene RIKEN cDNA 9230111E07 gene
Gm32513 2 167789368 to 167796286 6918 + lncRNA gene predicted gene, 32513
Gm32600 2 167815406 to 167821085 5679 - lncRNA gene predicted gene, 32600
1200007C13Rik 2 167827693 to 167833646 5953 - lincRNA gene RIKEN cDNA 1200007C13 gene
Cpgi12756 2 167831195 to 167831466 271 CpG island CpG island 12756
Tssr27809 2 167833642 to 167833648 6 - TSS region transcription start site region 27809
Gm32685 2 167836113 to 167839152 3039 + lncRNA gene predicted gene, 32685
Gm32747 2 167839218 to 167840015 797 - lncRNA gene predicted gene, 32747
Gm32800 2 167847197 to 167847980 783 - lncRNA gene predicted gene, 32800
Tssr27810 2 167847823 to 167847834 11 - TSS region transcription start site region 27810
Gm32845 2 167848407 to 167858426 10019 + lncRNA gene predicted gene, 32845
Gm33033 2 167858300 to 167860617 2317 - lncRNA gene predicted gene, 33033
Gm14319 2 167858585 to 167862542 3957 + lincRNA gene predicted gene 14319
Tssr27811 2 167861264 to 167861266 2 - TSS region transcription start site region 27811
Tssr21853 2 167863095 to 167863124 29 + TSS region transcription start site region 21853
Gm32928 2 167870960 to 167873118 2158 - lncRNA gene predicted gene, 32928
Tssr21854 2 167871760 to 167871794 34 + TSS region transcription start site region 21854
Tssr27812 2 167877596 to 167877612 16 - TSS region transcription start site region 27812
Cpgi12757 2 167894987 to 167895562 575 CpG island CpG island 12757
Cpgi12758 2 167899898 to 167900052 154 CpG island CpG island 12758
Tssr775 2 167924999 to 167925015 16 - TSS region transcription start site region 775
Cpgi12759 2 167931491 to 167933198 1707 CpG island CpG island 12759
Tssr21855 2 167932023 to 167932064 41 + TSS region transcription start site region 21855
Ptpn1 2 167932057 to 167979385 47328 + protein coding gene protein tyrosine phosphatase, non-receptor type 1
Tssr21856 2 167932336 to 167932379 43 + TSS region transcription start site region 21856
Tssr21857 2 167932383 to 167932400 17 + TSS region transcription start site region 21857
Tssr21858 2 167936474 to 167936483 9 + TSS region transcription start site region 21858
Tssr21859 2 167940798 to 167940802 4 + TSS region transcription start site region 21859
Ripor3 2 167980164 to 168010618 30454 - protein coding gene RIPOR family member 3
Tssr27813 2 167988267 to 167988291 24 - TSS region transcription start site region 27813
Tssr27814 2 167997664 to 167997697 33 - TSS region transcription start site region 27814
Tssr27815 2 168003492 to 168003503 11 - TSS region transcription start site region 27815
Tssr27816 2 168003559 to 168003566 7 - TSS region transcription start site region 27816
Gm14236 2 168010529 to 168011506 977 + antisense lncRNA gene predicted gene 14236
Tssr27817 2 168010655 to 168010663 8 - TSS region transcription start site region 27817
Tssr27818 2 168010702 to 168010713 11 - TSS region transcription start site region 27818