Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:166941285-168219803

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335 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ltpr2 2 103265371 to 167370436 64105065 QTL Leishmania tropica response 2
Cse1l 2 166906048 to 166946389 40341 + protein coding gene chromosome segregation 1-like (S. cerevisiae)
Gm17096 2 166943539 to 166944308 769 + antisense lncRNA gene predicted gene 17096
Stau1 2 166947549 to 166996299 48750 - protein coding gene staufen double-stranded RNA binding protein 1
Tssr27717 2 166950895 to 166950909 14 - TSS region transcription start site region 27717
Cpgi12728 2 166995250 to 166996621 1371 CpG island CpG island 12728
Tssr27718 2 166996098 to 166996109 11 - TSS region transcription start site region 27718
Tssr27719 2 166996147 to 166996158 11 - TSS region transcription start site region 27719
Tssr27720 2 166996206 to 166996220 14 - TSS region transcription start site region 27720
Tssr27721 2 166996221 to 166996256 35 - TSS region transcription start site region 27721
Tssr27722 2 166996259 to 166996283 24 - TSS region transcription start site region 27722
Gm11470 2 167007131 to 167009039 1908 - pseudogene predicted gene 11470
Cpgi12729 2 167014946 to 167015946 1000 CpG island CpG island 12729
Ddx27 2 167015255 to 167034950 19695 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
Tssr21783 2 167015283 to 167015336 53 + TSS region transcription start site region 21783
Znfx1 2 167035793 to 167063015 27222 - protein coding gene zinc finger, NFX1-type containing 1
Tssr27723 2 167043494 to 167043523 29 - TSS region transcription start site region 27723
Tssr27724 2 167044191 to 167044215 24 - TSS region transcription start site region 27724
Tssr27725 2 167046930 to 167046953 23 - TSS region transcription start site region 27725
Tssr27726 2 167056633 to 167056650 17 - TSS region transcription start site region 27726
Tssr27727 2 167056755 to 167056772 17 - TSS region transcription start site region 27727
Tssr27728 2 167056791 to 167056811 20 - TSS region transcription start site region 27728
Tssr27729 2 167056813 to 167056827 14 - TSS region transcription start site region 27729
Tssr21784 2 167056849 to 167056864 15 + TSS region transcription start site region 21784
Tssr27730 2 167056920 to 167056943 23 - TSS region transcription start site region 27730
Tssr21785 2 167058880 to 167058892 12 + TSS region transcription start site region 21785
Tssr27731 2 167060054 to 167060069 15 - TSS region transcription start site region 27731
Tssr27732 2 167060102 to 167060127 25 - TSS region transcription start site region 27732
Tssr27733 2 167060138 to 167060174 36 - TSS region transcription start site region 27733
Tssr27734 2 167060417 to 167060430 13 - TSS region transcription start site region 27734
Tssr27735 2 167060447 to 167060456 9 - TSS region transcription start site region 27735
Tssr21786 2 167060516 to 167060547 31 + TSS region transcription start site region 21786
Tssr27736 2 167060831 to 167060836 5 - TSS region transcription start site region 27736
Tssr27737 2 167060838 to 167060847 9 - TSS region transcription start site region 27737
Tssr27738 2 167060849 to 167060892 43 - TSS region transcription start site region 27738
Tssr27739 2 167061069 to 167061076 7 - TSS region transcription start site region 27739
Tssr21787 2 167061270 to 167061289 19 + TSS region transcription start site region 21787
Tssr21788 2 167061291 to 167061302 11 + TSS region transcription start site region 21788
Cpgi12730 2 167062120 to 167063497 1377 CpG island CpG island 12730
Tssr27740 2 167062558 to 167062605 47 - TSS region transcription start site region 27740
Tssr27741 2 167062607 to 167062724 117 - TSS region transcription start site region 27741
Tssr27742 2 167062732 to 167062745 13 - TSS region transcription start site region 27742
Tssr21789 2 167062815 to 167062854 39 + TSS region transcription start site region 21789
Tssr27743 2 167062864 to 167062873 9 - TSS region transcription start site region 27743
Tssr27744 2 167062981 to 167063048 67 - TSS region transcription start site region 27744
Gm27494 2 167063016 to 167063204 188 + unclassified non-coding RNA gene predicted gene, 27494
Zfas1 2 167063103 to 167065862 2759 + lncRNA gene zinc finger, NFX1-type containing 1, antisense RNA 1
Tssr21790 2 167063213 to 167063227 14 + TSS region transcription start site region 21790
Gm25878 2 167063473 to 167063565 92 + snoRNA gene predicted gene, 25878
Gm23201 2 167064998 to 167065086 88 + snoRNA gene predicted gene, 23201
Snord12 2 167065293 to 167065358 65 + snoRNA gene small nucleolar RNA, C/D box 12
Gm39984 2 167074517 to 167079239 4722 - lncRNA gene predicted gene, 39984
Gm11472 2 167087184 to 167087739 555 - pseudogene predicted gene 11472
Tssr27745 2 167087768 to 167087775 7 - TSS region transcription start site region 27745
Gm11471 2 167093559 to 167093756 197 + pseudogene predicted gene 11471
Kcnb1 2 167095969 to 167189988 94019 - protein coding gene potassium voltage gated channel, Shab-related subfamily, member 1
Tssr27746 2 167101576 to 167101578 2 - TSS region transcription start site region 27746
Cpgi12731 2 167102165 to 167103060 895 CpG island CpG island 12731
Cpgi12732 2 167104633 to 167106227 1594 CpG island CpG island 12732
Tssr27747 2 167111689 to 167111694 5 - TSS region transcription start site region 27747
D2Dcr128 2 167114771 to 167114869 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 128
Cpgi12733 2 167129318 to 167129470 152 CpG island CpG island 12733
Tssr21791 2 167129481 to 167129493 12 + TSS region transcription start site region 21791
Bdt1 2 167146982 to 167147098 116 QTL bone density traits 1
D2Mit413 2 167146982 to 167147098 116 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 413
Cpgi12734 2 167188036 to 167190886 2850 CpG island CpG island 12734
Tssr27748 2 167188624 to 167188637 13 - TSS region transcription start site region 27748
1110018N20Rik 2 167188702 to 167192808 4106 + unclassified non-coding RNA gene RIKEN cDNA 1110018N20 gene
Tssr27749 2 167188771 to 167188773 2 - TSS region transcription start site region 27749
Tssr27750 2 167188787 to 167188815 28 - TSS region transcription start site region 27750
Tssr27751 2 167188829 to 167188836 7 - TSS region transcription start site region 27751
Tssr21792 2 167189660 to 167189676 16 + TSS region transcription start site region 21792
Tssr21793 2 167189679 to 167189693 14 + TSS region transcription start site region 21793
Tssr27752 2 167190087 to 167190108 21 - TSS region transcription start site region 27752
Tssr27753 2 167190124 to 167190173 49 - TSS region transcription start site region 27753
Tssr27754 2 167190287 to 167190312 25 - TSS region transcription start site region 27754
Gm14291 2 167201576 to 167202799 1223 + antisense lncRNA gene predicted gene 14291
Ptgis 2 167203196 to 167240537 37341 - protein coding gene prostaglandin I2 (prostacyclin) synthase
Tssr27755 2 167221333 to 167221385 52 - TSS region transcription start site region 27755
Cpgi12735 2 167240084 to 167240732 648 CpG island CpG island 12735
Tssr27756 2 167240534 to 167240577 43 - TSS region transcription start site region 27756
Tssr27757 2 167240588 to 167240610 22 - TSS region transcription start site region 27757
Gm46778 2 167249571 to 167252791 3220 - lncRNA gene predicted gene, 46778
Tssr27758 2 167252119 to 167252141 22 - TSS region transcription start site region 27758
Cpgi12736 2 167280667 to 167280935 268 CpG island CpG island 12736
Gm11473 2 167281419 to 167281777 358 - pseudogene predicted gene 11473
B4galt5 2 167298444 to 167349178 50734 - protein coding gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
Cpgi12737 2 167299351 to 167299622 271 CpG island CpG island 12737
Tssr27759 2 167299717 to 167299734 17 - TSS region transcription start site region 27759
Tssr27760 2 167300775 to 167300779 4 - TSS region transcription start site region 27760
Tssr27761 2 167300903 to 167300917 14 - TSS region transcription start site region 27761
Tssr27762 2 167301478 to 167301487 9 - TSS region transcription start site region 27762
Tssr27763 2 167302211 to 167302221 10 - TSS region transcription start site region 27763
Tssr27764 2 167309296 to 167309306 10 - TSS region transcription start site region 27764
Tssr27765 2 167313166 to 167313178 12 - TSS region transcription start site region 27765
2010003K10Rik 2 167322578 to 167324110 1532 unclassified gene RIKEN cDNA 2010003K10 gene
Tssr27766 2 167339386 to 167339392 6 - TSS region transcription start site region 27766
Cpgi12738 2 167348358 to 167349943 1585 CpG island CpG island 12738
Tssr27767 2 167349111 to 167349122 11 - TSS region transcription start site region 27767
Tssr27768 2 167349142 to 167349157 15 - TSS region transcription start site region 27768
Tssr767 2 167349158 to 167349163 5 - TSS region transcription start site region 767
Tssr27769 2 167349167 to 167349249 82 - TSS region transcription start site region 27769
Tssr27770 2 167349343 to 167349371 28 - TSS region transcription start site region 27770
Tssr21794 2 167349674 to 167349715 41 + TSS region transcription start site region 21794
Tssr21795 2 167349720 to 167349735 15 + TSS region transcription start site region 21795
Tssr27771 2 167358382 to 167358395 13 - TSS region transcription start site region 27771
Tssr21796 2 167358882 to 167358909 27 + TSS region transcription start site region 21796
Tssr21797 2 167358917 to 167358945 28 + TSS region transcription start site region 21797
Tssr21798 2 167358970 to 167358983 13 + TSS region transcription start site region 21798
Tssr21799 2 167363584 to 167363588 4 + TSS region transcription start site region 21799
Tssr21800 2 167363612 to 167363652 40 + TSS region transcription start site region 21800
Tssr27772 2 167367261 to 167367265 4 - TSS region transcription start site region 27772
Ltpr2e 2 167370301 to 167370436 135 QTL Leishmania tropica response 2e
Lrnx10 2 167370301 to 167370436 135 QTL learning-contextual 10
D2Mit52 2 167370301 to 167370436 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 52
Lmr16 2 167370301 to 167370436 135 QTL leishmaniasis resistance 16
Tssr21801 2 167375341 to 167375354 13 + TSS region transcription start site region 21801
Tssr21802 2 167375355 to 167375363 8 + TSS region transcription start site region 21802
Tssr21803 2 167381852 to 167381898 46 + TSS region transcription start site region 21803
Tssr768 2 167382003 to 167382004 1 + TSS region transcription start site region 768
Tssr27773 2 167383559 to 167383572 13 - TSS region transcription start site region 27773
Tssr21804 2 167384062 to 167384073 11 + TSS region transcription start site region 21804
Tssr21805 2 167384084 to 167384096 12 + TSS region transcription start site region 21805
Tssr21806 2 167395998 to 167396003 5 + TSS region transcription start site region 21806
Cpgi12739 2 167421118 to 167422296 1178 CpG island CpG island 12739
Tssr27774 2 167421451 to 167421467 16 - TSS region transcription start site region 27774
Tssr21807 2 167421692 to 167421703 11 + TSS region transcription start site region 21807
Tssr21808 2 167421706 to 167421732 26 + TSS region transcription start site region 21808
Slc9a8 2 167421712 to 167477000 55288 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 8
Tssr21809 2 167422037 to 167422050 13 + TSS region transcription start site region 21809
Tssr21810 2 167443763 to 167443768 5 + TSS region transcription start site region 21810
Tssr21811 2 167451011 to 167451030 19 + TSS region transcription start site region 21811
Cpgi12740 2 167471365 to 167471615 250 CpG island CpG island 12740
Spata2 2 167481136 to 167492874 11738 - protein coding gene spermatogenesis associated 2
Tssr27775 2 167483319 to 167483347 28 - TSS region transcription start site region 27775
Cpgi12741 2 167483370 to 167483708 338 CpG island CpG island 12741
Cpgi12742 2 167484157 to 167484398 241 CpG island CpG island 12742
Cpgi12743 2 167485262 to 167485443 181 CpG island CpG island 12743
Tssr27776 2 167485649 to 167485658 9 - TSS region transcription start site region 27776
Cpgi12744 2 167491907 to 167493403 1496 CpG island CpG island 12744
Rnf114 2 167492645 to 167516169 23524 + protein coding gene ring finger protein 114
Tssr27777 2 167492826 to 167492891 65 - TSS region transcription start site region 27777
Cpgi12745 2 167502973 to 167504540 1567 CpG island CpG island 12745
Tssr21812 2 167503207 to 167503224 17 + TSS region transcription start site region 21812
Tssr21813 2 167503229 to 167503238 9 + TSS region transcription start site region 21813
Tssr21814 2 167503414 to 167503461 47 + TSS region transcription start site region 21814
Tssr21815 2 167504127 to 167504139 12 + TSS region transcription start site region 21815
Tssr21816 2 167504141 to 167504150 9 + TSS region transcription start site region 21816
Tssr21817 2 167504157 to 167504168 11 + TSS region transcription start site region 21817
Tssr21818 2 167504198 to 167504214 16 + TSS region transcription start site region 21818
Gm11474 2 167535166 to 167535442 276 - pseudogene predicted gene 11474
Cpgi12746 2 167537743 to 167539246 1503 CpG island CpG island 12746
Tssr21819 2 167538192 to 167538210 18 + TSS region transcription start site region 21819
Snai1 2 167538195 to 167542814 4619 + protein coding gene snail family zinc finger 1
Tssr21820 2 167539782 to 167539787 5 + TSS region transcription start site region 21820
Tssr27778 2 167543628 to 167543634 6 - TSS region transcription start site region 27778
Gm11476 2 167553314 to 167607845 54531 + lncRNA gene predicted gene 11476
Cpgi12747 2 167559410 to 167559732 322 CpG island CpG island 12747
Cpgi12748 2 167565786 to 167565955 169 CpG island CpG island 12748
Gm31619 2 167571285 to 167589803 18518 - lncRNA gene predicted gene, 31619
Tssr27779 2 167577178 to 167577182 4 - TSS region transcription start site region 27779
Cpgi12749 2 167588984 to 167589184 200 CpG island CpG island 12749
Tssr769 2 167588990 to 167589001 11 + TSS region transcription start site region 769
Tssr21821 2 167589081 to 167589102 21 + TSS region transcription start site region 21821
Tssr27780 2 167589403 to 167589457 54 - TSS region transcription start site region 27780
Tssr21822 2 167589548 to 167589559 11 + TSS region transcription start site region 21822
Tssr21823 2 167589592 to 167589616 24 + TSS region transcription start site region 21823
Tssr27781 2 167590517 to 167590527 10 - TSS region transcription start site region 27781
Tssr21824 2 167590738 to 167590750 12 + TSS region transcription start site region 21824
Gm11475 2 167591395 to 167591870 475 + pseudogene predicted gene 11475
Cpgi12750 2 167597303 to 167597849 546 CpG island CpG island 12750
D2Dcr129 2 167603743 to 167603838 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 129
Ube2v1 2 167607639 to 167632016 24377 - protein coding gene ubiquitin-conjugating enzyme E2 variant 1
Gm20431 2 167607850 to 167661496 53646 - protein coding gene predicted gene 20431
Tssr21825 2 167629085 to 167629098 13 + TSS region transcription start site region 21825
Cpgi12751 2 167631172 to 167632403 1231 CpG island CpG island 12751
Tssr27782 2 167631983 to 167632009 26 - TSS region transcription start site region 27782
Gm31852 2 167632107 to 167642615 10508 + lncRNA gene predicted gene, 31852
Tssr21826 2 167642598 to 167642616 18 + TSS region transcription start site region 21826
Tssr27783 2 167643143 to 167643161 18 - TSS region transcription start site region 27783
Tmem189 2 167643225 to 167661544 18319 - protein coding gene transmembrane protein 189
Tssr27784 2 167643539 to 167643564 25 - TSS region transcription start site region 27784
Tssr27785 2 167643571 to 167643583 12 - TSS region transcription start site region 27785
Tssr27786 2 167643764 to 167643802 38 - TSS region transcription start site region 27786
Tssr27787 2 167644171 to 167644184 13 - TSS region transcription start site region 27787
Gm22355 2 167644364 to 167644459 95 - miRNA gene predicted gene, 22355
Tssr27788 2 167654913 to 167654963 50 - TSS region transcription start site region 27788
Tssr21827 2 167656786 to 167656795 9 + TSS region transcription start site region 21827
Cpgi12752 2 167660832 to 167662206 1374 CpG island CpG island 12752
Tssr27789 2 167661514 to 167661591 77 - TSS region transcription start site region 27789
Tssr21828 2 167661753 to 167661767 14 + TSS region transcription start site region 21828
Gm14320 2 167664565 to 167667704 3139 + antisense lncRNA gene predicted gene 14320
Cpgi12753 2 167680016 to 167680283 267 CpG island CpG island 12753
Cpgi12754 2 167688088 to 167690234 2146 CpG island CpG island 12754
Tssr21829 2 167688728 to 167688765 37 + TSS region transcription start site region 21829
Tssr21830 2 167688766 to 167688793 27 + TSS region transcription start site region 21830
Cebpb 2 167688915 to 167690418 1503 + protein coding gene CCAAT/enhancer binding protein (C/EBP), beta
Tssr21831 2 167688956 to 167688973 17 + TSS region transcription start site region 21831
Tssr27790 2 167689211 to 167689239 28 - TSS region transcription start site region 27790
Tssr21832 2 167690273 to 167690296 23 + TSS region transcription start site region 21832