Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:166901576-167301578

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31204 2 166898425 to 166905922 7497 - lncRNA gene predicted gene, 31204
Tssr27714 2 166904533 to 166904538 5 - TSS region transcription start site region 27714
Cpgi12727 2 166905690 to 166906874 1184 CpG island CpG island 12727
Tssr27715 2 166905851 to 166905874 23 - TSS region transcription start site region 27715
Tssr27716 2 166905881 to 166905909 28 - TSS region transcription start site region 27716
Tssr21780 2 166906026 to 166906099 73 + TSS region transcription start site region 21780
Cse1l 2 166906048 to 166946389 40341 + protein coding gene chromosome segregation 1-like (S. cerevisiae)
Tssr21781 2 166906449 to 166906486 37 + TSS region transcription start site region 21781
Tssr21782 2 166937374 to 166937389 15 + TSS region transcription start site region 21782
Gm17096 2 166943539 to 166944308 769 + antisense lncRNA gene predicted gene 17096
Stau1 2 166947549 to 166996299 48750 - protein coding gene staufen double-stranded RNA binding protein 1
Tssr27717 2 166950895 to 166950909 14 - TSS region transcription start site region 27717
Cpgi12728 2 166995250 to 166996621 1371 CpG island CpG island 12728
Tssr27718 2 166996098 to 166996109 11 - TSS region transcription start site region 27718
Tssr27719 2 166996147 to 166996158 11 - TSS region transcription start site region 27719
Tssr27720 2 166996206 to 166996220 14 - TSS region transcription start site region 27720
Tssr27721 2 166996221 to 166996256 35 - TSS region transcription start site region 27721
Tssr27722 2 166996259 to 166996283 24 - TSS region transcription start site region 27722
Gm11470 2 167007131 to 167009039 1908 - pseudogene predicted gene 11470
Cpgi12729 2 167014946 to 167015946 1000 CpG island CpG island 12729
Ddx27 2 167015255 to 167034950 19695 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
Tssr21783 2 167015283 to 167015336 53 + TSS region transcription start site region 21783
Znfx1 2 167035793 to 167063015 27222 - protein coding gene zinc finger, NFX1-type containing 1
Tssr27723 2 167043494 to 167043523 29 - TSS region transcription start site region 27723
Tssr27724 2 167044191 to 167044215 24 - TSS region transcription start site region 27724
Tssr27725 2 167046930 to 167046953 23 - TSS region transcription start site region 27725
Tssr27726 2 167056633 to 167056650 17 - TSS region transcription start site region 27726
Tssr27727 2 167056755 to 167056772 17 - TSS region transcription start site region 27727
Tssr27728 2 167056791 to 167056811 20 - TSS region transcription start site region 27728
Tssr27729 2 167056813 to 167056827 14 - TSS region transcription start site region 27729
Tssr21784 2 167056849 to 167056864 15 + TSS region transcription start site region 21784
Tssr27730 2 167056920 to 167056943 23 - TSS region transcription start site region 27730
Tssr21785 2 167058880 to 167058892 12 + TSS region transcription start site region 21785
Tssr27731 2 167060054 to 167060069 15 - TSS region transcription start site region 27731
Tssr27732 2 167060102 to 167060127 25 - TSS region transcription start site region 27732
Tssr27733 2 167060138 to 167060174 36 - TSS region transcription start site region 27733
Tssr27734 2 167060417 to 167060430 13 - TSS region transcription start site region 27734
Tssr27735 2 167060447 to 167060456 9 - TSS region transcription start site region 27735
Tssr21786 2 167060516 to 167060547 31 + TSS region transcription start site region 21786
Tssr27736 2 167060831 to 167060836 5 - TSS region transcription start site region 27736
Tssr27737 2 167060838 to 167060847 9 - TSS region transcription start site region 27737
Tssr27738 2 167060849 to 167060892 43 - TSS region transcription start site region 27738
Tssr27739 2 167061069 to 167061076 7 - TSS region transcription start site region 27739
Tssr21787 2 167061270 to 167061289 19 + TSS region transcription start site region 21787
Tssr21788 2 167061291 to 167061302 11 + TSS region transcription start site region 21788
Cpgi12730 2 167062120 to 167063497 1377 CpG island CpG island 12730
Tssr27740 2 167062558 to 167062605 47 - TSS region transcription start site region 27740
Tssr27741 2 167062607 to 167062724 117 - TSS region transcription start site region 27741
Tssr27742 2 167062732 to 167062745 13 - TSS region transcription start site region 27742
Tssr21789 2 167062815 to 167062854 39 + TSS region transcription start site region 21789
Tssr27743 2 167062864 to 167062873 9 - TSS region transcription start site region 27743
Tssr27744 2 167062981 to 167063048 67 - TSS region transcription start site region 27744
Gm27494 2 167063016 to 167063204 188 + unclassified non-coding RNA gene predicted gene, 27494
Zfas1 2 167063103 to 167065862 2759 + lncRNA gene zinc finger, NFX1-type containing 1, antisense RNA 1
Tssr21790 2 167063213 to 167063227 14 + TSS region transcription start site region 21790
Gm25878 2 167063473 to 167063565 92 + snoRNA gene predicted gene, 25878
Gm23201 2 167064998 to 167065086 88 + snoRNA gene predicted gene, 23201
Snord12 2 167065293 to 167065358 65 + snoRNA gene small nucleolar RNA, C/D box 12
Gm39984 2 167074517 to 167079239 4722 - lncRNA gene predicted gene, 39984
Gm11472 2 167087184 to 167087739 555 - pseudogene predicted gene 11472
Tssr27745 2 167087768 to 167087775 7 - TSS region transcription start site region 27745
Gm11471 2 167093559 to 167093756 197 + pseudogene predicted gene 11471
Kcnb1 2 167095969 to 167189988 94019 - protein coding gene potassium voltage gated channel, Shab-related subfamily, member 1
Tssr27746 2 167101576 to 167101578 2 - TSS region transcription start site region 27746
Cpgi12731 2 167102165 to 167103060 895 CpG island CpG island 12731
Cpgi12732 2 167104633 to 167106227 1594 CpG island CpG island 12732
Tssr27747 2 167111689 to 167111694 5 - TSS region transcription start site region 27747
D2Dcr128 2 167114771 to 167114869 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 128
Cpgi12733 2 167129318 to 167129470 152 CpG island CpG island 12733
Tssr21791 2 167129481 to 167129493 12 + TSS region transcription start site region 21791
Bdt1 2 167146982 to 167147098 116 QTL bone density traits 1
D2Mit413 2 167146982 to 167147098 116 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 413
Cpgi12734 2 167188036 to 167190886 2850 CpG island CpG island 12734
Tssr27748 2 167188624 to 167188637 13 - TSS region transcription start site region 27748
1110018N20Rik 2 167188702 to 167192808 4106 + unclassified non-coding RNA gene RIKEN cDNA 1110018N20 gene
Tssr27749 2 167188771 to 167188773 2 - TSS region transcription start site region 27749
Tssr27750 2 167188787 to 167188815 28 - TSS region transcription start site region 27750
Tssr27751 2 167188829 to 167188836 7 - TSS region transcription start site region 27751
Tssr21792 2 167189660 to 167189676 16 + TSS region transcription start site region 21792
Tssr21793 2 167189679 to 167189693 14 + TSS region transcription start site region 21793
Tssr27752 2 167190087 to 167190108 21 - TSS region transcription start site region 27752
Tssr27753 2 167190124 to 167190173 49 - TSS region transcription start site region 27753
Tssr27754 2 167190287 to 167190312 25 - TSS region transcription start site region 27754
Gm14291 2 167201576 to 167202799 1223 + antisense lncRNA gene predicted gene 14291
Ptgis 2 167203196 to 167240537 37341 - protein coding gene prostaglandin I2 (prostacyclin) synthase
Tssr27755 2 167221333 to 167221385 52 - TSS region transcription start site region 27755
Cpgi12735 2 167240084 to 167240732 648 CpG island CpG island 12735
Tssr27756 2 167240534 to 167240577 43 - TSS region transcription start site region 27756
Tssr27757 2 167240588 to 167240610 22 - TSS region transcription start site region 27757
Gm46778 2 167249571 to 167252791 3220 - lncRNA gene predicted gene, 46778
Tssr27758 2 167252119 to 167252141 22 - TSS region transcription start site region 27758
Cpgi12736 2 167280667 to 167280935 268 CpG island CpG island 12736
Gm11473 2 167281419 to 167281777 358 - pseudogene predicted gene 11473
B4galt5 2 167298444 to 167349178 50734 - protein coding gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
Cpgi12737 2 167299351 to 167299622 271 CpG island CpG island 12737
Tssr27759 2 167299717 to 167299734 17 - TSS region transcription start site region 27759
Tssr27760 2 167300775 to 167300779 4 - TSS region transcription start site region 27760
Tssr27761 2 167300903 to 167300917 14 - TSS region transcription start site region 27761
Tssr27762 2 167301478 to 167301487 9 - TSS region transcription start site region 27762