Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:166580588-167123052

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prex1 2 166566345 to 166713832 147487 - protein coding gene phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
Tssr27705 2 166581969 to 166582019 50 - TSS region transcription start site region 27705
Tssr27706 2 166603693 to 166603695 2 - TSS region transcription start site region 27706
Cpgi12722 2 166625316 to 166625538 222 CpG island CpG island 12722
Gm23152 2 166655027 to 166655142 115 - rRNA gene predicted gene, 23152
Tssr27707 2 166659751 to 166659766 15 - TSS region transcription start site region 27707
Gm25265 2 166682074 to 166682420 346 + unclassified non-coding RNA gene predicted gene, 25265
Tssr27708 2 166695753 to 166695757 4 - TSS region transcription start site region 27708
Cpgi12723 2 166712801 to 166714627 1826 CpG island CpG island 12723
Tssr27709 2 166713732 to 166713743 11 - TSS region transcription start site region 27709
Tssr27710 2 166713758 to 166713827 69 - TSS region transcription start site region 27710
Gm46777 2 166713915 to 166726737 12822 + lncRNA gene predicted gene, 46777
Tssr21773 2 166714101 to 166714116 15 + TSS region transcription start site region 21773
Gm31117 2 166756408 to 166766054 9646 - lncRNA gene predicted gene, 31117
Gm24477 2 166768745 to 166768847 102 + snRNA gene predicted gene, 24477
Cpgi12724 2 166786212 to 166787026 814 CpG island CpG island 12724
Tssr27711 2 166786753 to 166786792 39 - TSS region transcription start site region 27711
Trp53rkb 2 166792518 to 166799492 6974 + protein coding gene transformation related protein 53 regulating kinase B
Tssr21774 2 166792525 to 166792536 11 + TSS region transcription start site region 21774
Cpgi12725 2 166793514 to 166794304 790 CpG island CpG island 12725
Tssr21775 2 166793784 to 166793813 29 + TSS region transcription start site region 21775
Cpgi12726 2 166805231 to 166806214 983 CpG island CpG island 12726
Tssr21776 2 166805506 to 166805605 99 + TSS region transcription start site region 21776
Arfgef2 2 166805588 to 166898052 92464 + protein coding gene ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
Tssr21777 2 166805644 to 166805653 9 + TSS region transcription start site region 21777
Tssr27712 2 166821383 to 166821385 2 - TSS region transcription start site region 27712
Tssr27713 2 166825111 to 166825118 7 - TSS region transcription start site region 27713
Tssr766 2 166825128 to 166825137 9 - TSS region transcription start site region 766
Tssr21778 2 166825283 to 166825290 7 + TSS region transcription start site region 21778
Tssr21779 2 166827069 to 166827072 3 + TSS region transcription start site region 21779
Gm31204 2 166898425 to 166905922 7497 - lncRNA gene predicted gene, 31204
Tssr27714 2 166904533 to 166904538 5 - TSS region transcription start site region 27714
Cpgi12727 2 166905690 to 166906874 1184 CpG island CpG island 12727
Tssr27715 2 166905851 to 166905874 23 - TSS region transcription start site region 27715
Tssr27716 2 166905881 to 166905909 28 - TSS region transcription start site region 27716
Tssr21780 2 166906026 to 166906099 73 + TSS region transcription start site region 21780
Cse1l 2 166906048 to 166946389 40341 + protein coding gene chromosome segregation 1-like (S. cerevisiae)
Tssr21781 2 166906449 to 166906486 37 + TSS region transcription start site region 21781
Tssr21782 2 166937374 to 166937389 15 + TSS region transcription start site region 21782
Gm17096 2 166943539 to 166944308 769 + antisense lncRNA gene predicted gene 17096
Stau1 2 166947549 to 166996299 48750 - protein coding gene staufen double-stranded RNA binding protein 1
Tssr27717 2 166950895 to 166950909 14 - TSS region transcription start site region 27717
Cpgi12728 2 166995250 to 166996621 1371 CpG island CpG island 12728
Tssr27718 2 166996098 to 166996109 11 - TSS region transcription start site region 27718
Tssr27719 2 166996147 to 166996158 11 - TSS region transcription start site region 27719
Tssr27720 2 166996206 to 166996220 14 - TSS region transcription start site region 27720
Tssr27721 2 166996221 to 166996256 35 - TSS region transcription start site region 27721
Tssr27722 2 166996259 to 166996283 24 - TSS region transcription start site region 27722
Gm11470 2 167007131 to 167009039 1908 - pseudogene predicted gene 11470
Cpgi12729 2 167014946 to 167015946 1000 CpG island CpG island 12729
Ddx27 2 167015255 to 167034950 19695 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
Tssr21783 2 167015283 to 167015336 53 + TSS region transcription start site region 21783
Znfx1 2 167035793 to 167063015 27222 - protein coding gene zinc finger, NFX1-type containing 1
Tssr27723 2 167043494 to 167043523 29 - TSS region transcription start site region 27723
Tssr27724 2 167044191 to 167044215 24 - TSS region transcription start site region 27724
Tssr27725 2 167046930 to 167046953 23 - TSS region transcription start site region 27725
Tssr27726 2 167056633 to 167056650 17 - TSS region transcription start site region 27726
Tssr27727 2 167056755 to 167056772 17 - TSS region transcription start site region 27727
Tssr27728 2 167056791 to 167056811 20 - TSS region transcription start site region 27728
Tssr27729 2 167056813 to 167056827 14 - TSS region transcription start site region 27729
Tssr21784 2 167056849 to 167056864 15 + TSS region transcription start site region 21784
Tssr27730 2 167056920 to 167056943 23 - TSS region transcription start site region 27730
Tssr21785 2 167058880 to 167058892 12 + TSS region transcription start site region 21785
Tssr27731 2 167060054 to 167060069 15 - TSS region transcription start site region 27731
Tssr27732 2 167060102 to 167060127 25 - TSS region transcription start site region 27732
Tssr27733 2 167060138 to 167060174 36 - TSS region transcription start site region 27733
Tssr27734 2 167060417 to 167060430 13 - TSS region transcription start site region 27734
Tssr27735 2 167060447 to 167060456 9 - TSS region transcription start site region 27735
Tssr21786 2 167060516 to 167060547 31 + TSS region transcription start site region 21786
Tssr27736 2 167060831 to 167060836 5 - TSS region transcription start site region 27736
Tssr27737 2 167060838 to 167060847 9 - TSS region transcription start site region 27737
Tssr27738 2 167060849 to 167060892 43 - TSS region transcription start site region 27738
Tssr27739 2 167061069 to 167061076 7 - TSS region transcription start site region 27739
Tssr21787 2 167061270 to 167061289 19 + TSS region transcription start site region 21787
Tssr21788 2 167061291 to 167061302 11 + TSS region transcription start site region 21788
Cpgi12730 2 167062120 to 167063497 1377 CpG island CpG island 12730
Tssr27740 2 167062558 to 167062605 47 - TSS region transcription start site region 27740
Tssr27741 2 167062607 to 167062724 117 - TSS region transcription start site region 27741
Tssr27742 2 167062732 to 167062745 13 - TSS region transcription start site region 27742
Tssr21789 2 167062815 to 167062854 39 + TSS region transcription start site region 21789
Tssr27743 2 167062864 to 167062873 9 - TSS region transcription start site region 27743
Tssr27744 2 167062981 to 167063048 67 - TSS region transcription start site region 27744
Gm27494 2 167063016 to 167063204 188 + unclassified non-coding RNA gene predicted gene, 27494
Zfas1 2 167063103 to 167065862 2759 + lncRNA gene zinc finger, NFX1-type containing 1, antisense RNA 1
Tssr21790 2 167063213 to 167063227 14 + TSS region transcription start site region 21790
Gm25878 2 167063473 to 167063565 92 + snoRNA gene predicted gene, 25878
Gm23201 2 167064998 to 167065086 88 + snoRNA gene predicted gene, 23201
Snord12 2 167065293 to 167065358 65 + snoRNA gene small nucleolar RNA, C/D box 12
Gm39984 2 167074517 to 167079239 4722 - lncRNA gene predicted gene, 39984
Gm11472 2 167087184 to 167087739 555 - pseudogene predicted gene 11472
Tssr27745 2 167087768 to 167087775 7 - TSS region transcription start site region 27745
Gm11471 2 167093559 to 167093756 197 + pseudogene predicted gene 11471
Kcnb1 2 167095969 to 167189988 94019 - protein coding gene potassium voltage gated channel, Shab-related subfamily, member 1
Tssr27746 2 167101576 to 167101578 2 - TSS region transcription start site region 27746
Cpgi12731 2 167102165 to 167103060 895 CpG island CpG island 12731
Cpgi12732 2 167104633 to 167106227 1594 CpG island CpG island 12732
Tssr27747 2 167111689 to 167111694 5 - TSS region transcription start site region 27747
D2Dcr128 2 167114771 to 167114869 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 128