Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:166537518-167054492

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr21771 2 166541717 to 166541719 2 + TSS region transcription start site region 21771
Tssr21772 2 166548657 to 166548698 41 + TSS region transcription start site region 21772
Gm29679 2 166564443 to 166567140 2697 + unclassified gene predicted gene, 29679
Prex1 2 166566345 to 166713832 147487 - protein coding gene phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
Tssr27701 2 166567201 to 166567232 31 - TSS region transcription start site region 27701
Tssr27702 2 166567243 to 166567265 22 - TSS region transcription start site region 27702
Tssr27703 2 166573727 to 166573731 4 - TSS region transcription start site region 27703
Cpgi12721 2 166575541 to 166575743 202 CpG island CpG island 12721
Tssr27704 2 166579617 to 166579632 15 - TSS region transcription start site region 27704
Tssr27705 2 166581969 to 166582019 50 - TSS region transcription start site region 27705
Tssr27706 2 166603693 to 166603695 2 - TSS region transcription start site region 27706
Cpgi12722 2 166625316 to 166625538 222 CpG island CpG island 12722
Gm23152 2 166655027 to 166655142 115 - rRNA gene predicted gene, 23152
Tssr27707 2 166659751 to 166659766 15 - TSS region transcription start site region 27707
Gm25265 2 166682074 to 166682420 346 + unclassified non-coding RNA gene predicted gene, 25265
Tssr27708 2 166695753 to 166695757 4 - TSS region transcription start site region 27708
Cpgi12723 2 166712801 to 166714627 1826 CpG island CpG island 12723
Tssr27709 2 166713732 to 166713743 11 - TSS region transcription start site region 27709
Tssr27710 2 166713758 to 166713827 69 - TSS region transcription start site region 27710
Gm46777 2 166713915 to 166726737 12822 + lncRNA gene predicted gene, 46777
Tssr21773 2 166714101 to 166714116 15 + TSS region transcription start site region 21773
Gm31117 2 166756408 to 166766054 9646 - lncRNA gene predicted gene, 31117
Gm24477 2 166768745 to 166768847 102 + snRNA gene predicted gene, 24477
Cpgi12724 2 166786212 to 166787026 814 CpG island CpG island 12724
Tssr27711 2 166786753 to 166786792 39 - TSS region transcription start site region 27711
Trp53rkb 2 166792518 to 166799492 6974 + protein coding gene transformation related protein 53 regulating kinase B
Tssr21774 2 166792525 to 166792536 11 + TSS region transcription start site region 21774
Cpgi12725 2 166793514 to 166794304 790 CpG island CpG island 12725
Tssr21775 2 166793784 to 166793813 29 + TSS region transcription start site region 21775
Cpgi12726 2 166805231 to 166806214 983 CpG island CpG island 12726
Tssr21776 2 166805506 to 166805605 99 + TSS region transcription start site region 21776
Arfgef2 2 166805588 to 166898052 92464 + protein coding gene ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
Tssr21777 2 166805644 to 166805653 9 + TSS region transcription start site region 21777
Tssr27712 2 166821383 to 166821385 2 - TSS region transcription start site region 27712
Tssr27713 2 166825111 to 166825118 7 - TSS region transcription start site region 27713
Tssr766 2 166825128 to 166825137 9 - TSS region transcription start site region 766
Tssr21778 2 166825283 to 166825290 7 + TSS region transcription start site region 21778
Tssr21779 2 166827069 to 166827072 3 + TSS region transcription start site region 21779
Gm31204 2 166898425 to 166905922 7497 - lncRNA gene predicted gene, 31204
Tssr27714 2 166904533 to 166904538 5 - TSS region transcription start site region 27714
Cpgi12727 2 166905690 to 166906874 1184 CpG island CpG island 12727
Tssr27715 2 166905851 to 166905874 23 - TSS region transcription start site region 27715
Tssr27716 2 166905881 to 166905909 28 - TSS region transcription start site region 27716
Tssr21780 2 166906026 to 166906099 73 + TSS region transcription start site region 21780
Cse1l 2 166906048 to 166946389 40341 + protein coding gene chromosome segregation 1-like (S. cerevisiae)
Tssr21781 2 166906449 to 166906486 37 + TSS region transcription start site region 21781
Tssr21782 2 166937374 to 166937389 15 + TSS region transcription start site region 21782
Gm17096 2 166943539 to 166944308 769 + antisense lncRNA gene predicted gene 17096
Stau1 2 166947549 to 166996299 48750 - protein coding gene staufen double-stranded RNA binding protein 1
Tssr27717 2 166950895 to 166950909 14 - TSS region transcription start site region 27717
Cpgi12728 2 166995250 to 166996621 1371 CpG island CpG island 12728
Tssr27718 2 166996098 to 166996109 11 - TSS region transcription start site region 27718
Tssr27719 2 166996147 to 166996158 11 - TSS region transcription start site region 27719
Tssr27720 2 166996206 to 166996220 14 - TSS region transcription start site region 27720
Tssr27721 2 166996221 to 166996256 35 - TSS region transcription start site region 27721
Tssr27722 2 166996259 to 166996283 24 - TSS region transcription start site region 27722
Gm11470 2 167007131 to 167009039 1908 - pseudogene predicted gene 11470
Cpgi12729 2 167014946 to 167015946 1000 CpG island CpG island 12729
Ddx27 2 167015255 to 167034950 19695 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
Tssr21783 2 167015283 to 167015336 53 + TSS region transcription start site region 21783
Znfx1 2 167035793 to 167063015 27222 - protein coding gene zinc finger, NFX1-type containing 1
Tssr27723 2 167043494 to 167043523 29 - TSS region transcription start site region 27723
Tssr27724 2 167044191 to 167044215 24 - TSS region transcription start site region 27724
Tssr27725 2 167046930 to 167046953 23 - TSS region transcription start site region 27725