Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:166005036-167017373

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ncoa3 2 165992636 to 166073242 80606 + protein coding gene nuclear receptor coactivator 3
Tssr21754 2 166009616 to 166009622 6 + TSS region transcription start site region 21754
Tssr21755 2 166012933 to 166012946 13 + TSS region transcription start site region 21755
Tssr21756 2 166016249 to 166016254 5 + TSS region transcription start site region 21756
Tssr21757 2 166020292 to 166020295 3 + TSS region transcription start site region 21757
Tssr21758 2 166035507 to 166035523 16 + TSS region transcription start site region 21758
Tssr21759 2 166059186 to 166059220 34 + TSS region transcription start site region 21759
Tssr21760 2 166059312 to 166059328 16 + TSS region transcription start site region 21760
Tssr21761 2 166068749 to 166068753 4 + TSS region transcription start site region 21761
Tssr21762 2 166069045 to 166069048 3 + TSS region transcription start site region 21762
Tssr21763 2 166072201 to 166072223 22 + TSS region transcription start site region 21763
Tssr21764 2 166072547 to 166072548 1 + TSS region transcription start site region 21764
Sulf2 2 166073899 to 166155683 81784 - protein coding gene sulfatase 2
Tssr27668 2 166074442 to 166074463 21 - TSS region transcription start site region 27668
Tssr21765 2 166080714 to 166080725 11 + TSS region transcription start site region 21765
Tssr21766 2 166080748 to 166080759 11 + TSS region transcription start site region 21766
Tssr27669 2 166081027 to 166081064 37 - TSS region transcription start site region 27669
Tssr27670 2 166083565 to 166083576 11 - TSS region transcription start site region 27670
Tssr27671 2 166117052 to 166117071 19 - TSS region transcription start site region 27671
Tssr763 2 166117060 to 166117068 8 + TSS region transcription start site region 763
Tssr27672 2 166132678 to 166132705 27 - TSS region transcription start site region 27672
Tssr21767 2 166153995 to 166154036 41 + TSS region transcription start site region 21767
Cpgi12719 2 166154007 to 166155897 1890 CpG island CpG island 12719
Tssr27673 2 166154796 to 166154859 63 - TSS region transcription start site region 27673
Tssr27674 2 166154998 to 166155055 57 - TSS region transcription start site region 27674
Tssr27675 2 166155069 to 166155080 11 - TSS region transcription start site region 27675
Tssr27676 2 166155104 to 166155133 29 - TSS region transcription start site region 27676
Tssr27677 2 166155135 to 166155162 27 - TSS region transcription start site region 27677
Tssr27678 2 166155165 to 166155176 11 - TSS region transcription start site region 27678
Tssr27679 2 166155177 to 166155188 11 - TSS region transcription start site region 27679
Tssr27680 2 166155242 to 166155251 9 - TSS region transcription start site region 27680
Tssr27681 2 166155272 to 166155286 14 - TSS region transcription start site region 27681
Tssr27682 2 166155326 to 166155338 12 - TSS region transcription start site region 27682
Tssr27683 2 166155375 to 166155380 5 - TSS region transcription start site region 27683
Tssr27684 2 166155449 to 166155460 11 - TSS region transcription start site region 27684
Tssr27685 2 166155494 to 166155517 23 - TSS region transcription start site region 27685
Tssr27686 2 166155548 to 166155559 11 - TSS region transcription start site region 27686
Tssr27687 2 166155581 to 166155621 40 - TSS region transcription start site region 27687
Tssr27688 2 166155624 to 166155671 47 - TSS region transcription start site region 27688
Tssr27689 2 166155695 to 166155706 11 - TSS region transcription start site region 27689
Tssr27690 2 166155729 to 166155734 5 - TSS region transcription start site region 27690
Tssr27691 2 166155811 to 166155843 32 - TSS region transcription start site region 27691
Tssr27692 2 166156139 to 166156152 13 - TSS region transcription start site region 27692
Tssr27693 2 166156168 to 166156180 12 - TSS region transcription start site region 27693
Tssr27694 2 166156187 to 166156198 11 - TSS region transcription start site region 27694
Tssr27695 2 166156284 to 166156317 33 - TSS region transcription start site region 27695
Tssr21768 2 166156475 to 166156514 39 + TSS region transcription start site region 21768
Tssr27696 2 166158186 to 166158220 34 - TSS region transcription start site region 27696
Gm30320 2 166162433 to 166182737 20304 + lncRNA gene predicted gene, 30320
Gm22687 2 166189697 to 166189801 104 + rRNA gene predicted gene, 22687
Gm11466 2 166189793 to 166190862 1069 - lincRNA gene predicted gene 11466
Tssr21769 2 166194233 to 166194279 46 + TSS region transcription start site region 21769
Tssr27697 2 166194315 to 166194346 31 - TSS region transcription start site region 27697
Gm30536 2 166194537 to 166201418 6881 + lncRNA gene predicted gene, 30536
Gm11467 2 166207230 to 166208627 1397 - lincRNA gene predicted gene 11467
Gm11468 2 166273908 to 166294831 20923 + lincRNA gene predicted gene 11468
Tssr764 2 166274497 to 166274498 1 + TSS region transcription start site region 764
D2Mit24 2 166276765 to 166276940 175 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 24
Gm30733 2 166277734 to 166286589 8855 - protein coding gene predicted gene, 30733
D2Mit172 2 166296970 to 166297074 104 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 172
D2Dcr127 2 166332773 to 166332869 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 127
D2Mit53 2 166367834 to 166367981 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 53
Gm14268 2 166380828 to 166398187 17359 - lincRNA gene predicted gene 14268
Gct8 2 166394987 to 166395130 143 QTL granulosa cell tumorigenesis 8
D2Mit145 2 166394987 to 166395130 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 145
Tssr27698 2 166398124 to 166398143 19 - TSS region transcription start site region 27698
Tssr27699 2 166398238 to 166398275 37 - TSS region transcription start site region 27699
Gm30796 2 166405195 to 166415064 9869 + lncRNA gene predicted gene, 30796
D2Mit228 2 166416558 to 166416733 175 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 228
Tssr27700 2 166446671 to 166446674 3 - TSS region transcription start site region 27700
5031425F14Rik 2 166447451 to 166458770 11319 + lincRNA gene RIKEN cDNA 5031425F14 gene
Tssr21770 2 166447541 to 166447578 37 + TSS region transcription start site region 21770
Gm30908 2 166471463 to 166473959 2496 + lncRNA gene predicted gene, 30908
Gm14267 2 166500036 to 166522373 22337 - pseudogene predicted gene 14267
Gm11469 2 166500073 to 166500805 732 - pseudogene predicted gene 11469
Gm39983 2 166506823 to 166528853 22030 - lncRNA gene predicted gene, 39983
Cpgi12720 2 166509370 to 166509652 282 CpG island CpG island 12720
Tssr765 2 166509718 to 166509721 3 + TSS region transcription start site region 765
Tssr21771 2 166541717 to 166541719 2 + TSS region transcription start site region 21771
Tssr21772 2 166548657 to 166548698 41 + TSS region transcription start site region 21772
Gm29679 2 166564443 to 166567140 2697 + unclassified gene predicted gene, 29679
Prex1 2 166566345 to 166713832 147487 - protein coding gene phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
Tssr27701 2 166567201 to 166567232 31 - TSS region transcription start site region 27701
Tssr27702 2 166567243 to 166567265 22 - TSS region transcription start site region 27702
Tssr27703 2 166573727 to 166573731 4 - TSS region transcription start site region 27703
Cpgi12721 2 166575541 to 166575743 202 CpG island CpG island 12721
Tssr27704 2 166579617 to 166579632 15 - TSS region transcription start site region 27704
Tssr27705 2 166581969 to 166582019 50 - TSS region transcription start site region 27705
Tssr27706 2 166603693 to 166603695 2 - TSS region transcription start site region 27706
Cpgi12722 2 166625316 to 166625538 222 CpG island CpG island 12722
Gm23152 2 166655027 to 166655142 115 - rRNA gene predicted gene, 23152
Tssr27707 2 166659751 to 166659766 15 - TSS region transcription start site region 27707
Gm25265 2 166682074 to 166682420 346 + unclassified non-coding RNA gene predicted gene, 25265
Tssr27708 2 166695753 to 166695757 4 - TSS region transcription start site region 27708
Cpgi12723 2 166712801 to 166714627 1826 CpG island CpG island 12723
Tssr27709 2 166713732 to 166713743 11 - TSS region transcription start site region 27709
Tssr27710 2 166713758 to 166713827 69 - TSS region transcription start site region 27710
Gm46777 2 166713915 to 166726737 12822 + lncRNA gene predicted gene, 46777
Tssr21773 2 166714101 to 166714116 15 + TSS region transcription start site region 21773
Gm31117 2 166756408 to 166766054 9646 - lncRNA gene predicted gene, 31117
Gm24477 2 166768745 to 166768847 102 + snRNA gene predicted gene, 24477
Cpgi12724 2 166786212 to 166787026 814 CpG island CpG island 12724
Tssr27711 2 166786753 to 166786792 39 - TSS region transcription start site region 27711
Trp53rkb 2 166792518 to 166799492 6974 + protein coding gene transformation related protein 53 regulating kinase B
Tssr21774 2 166792525 to 166792536 11 + TSS region transcription start site region 21774
Cpgi12725 2 166793514 to 166794304 790 CpG island CpG island 12725
Tssr21775 2 166793784 to 166793813 29 + TSS region transcription start site region 21775
Cpgi12726 2 166805231 to 166806214 983 CpG island CpG island 12726
Tssr21776 2 166805506 to 166805605 99 + TSS region transcription start site region 21776
Arfgef2 2 166805588 to 166898052 92464 + protein coding gene ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
Tssr21777 2 166805644 to 166805653 9 + TSS region transcription start site region 21777
Tssr27712 2 166821383 to 166821385 2 - TSS region transcription start site region 27712
Tssr27713 2 166825111 to 166825118 7 - TSS region transcription start site region 27713
Tssr766 2 166825128 to 166825137 9 - TSS region transcription start site region 766
Tssr21778 2 166825283 to 166825290 7 + TSS region transcription start site region 21778
Tssr21779 2 166827069 to 166827072 3 + TSS region transcription start site region 21779
Gm31204 2 166898425 to 166905922 7497 - lncRNA gene predicted gene, 31204
Tssr27714 2 166904533 to 166904538 5 - TSS region transcription start site region 27714
Cpgi12727 2 166905690 to 166906874 1184 CpG island CpG island 12727
Tssr27715 2 166905851 to 166905874 23 - TSS region transcription start site region 27715
Tssr27716 2 166905881 to 166905909 28 - TSS region transcription start site region 27716
Tssr21780 2 166906026 to 166906099 73 + TSS region transcription start site region 21780
Cse1l 2 166906048 to 166946389 40341 + protein coding gene chromosome segregation 1-like (S. cerevisiae)
Tssr21781 2 166906449 to 166906486 37 + TSS region transcription start site region 21781
Tssr21782 2 166937374 to 166937389 15 + TSS region transcription start site region 21782
Gm17096 2 166943539 to 166944308 769 + antisense lncRNA gene predicted gene 17096
Stau1 2 166947549 to 166996299 48750 - protein coding gene staufen double-stranded RNA binding protein 1
Tssr27717 2 166950895 to 166950909 14 - TSS region transcription start site region 27717
Cpgi12728 2 166995250 to 166996621 1371 CpG island CpG island 12728
Tssr27718 2 166996098 to 166996109 11 - TSS region transcription start site region 27718
Tssr27719 2 166996147 to 166996158 11 - TSS region transcription start site region 27719
Tssr27720 2 166996206 to 166996220 14 - TSS region transcription start site region 27720
Tssr27721 2 166996221 to 166996256 35 - TSS region transcription start site region 27721
Tssr27722 2 166996259 to 166996283 24 - TSS region transcription start site region 27722
Gm11470 2 167007131 to 167009039 1908 - pseudogene predicted gene 11470
Cpgi12729 2 167014946 to 167015946 1000 CpG island CpG island 12729
Ddx27 2 167015255 to 167034950 19695 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
Tssr21783 2 167015283 to 167015336 53 + TSS region transcription start site region 21783