Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:165405266-166445841

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bsbob 2 143931525 to 165823099 21891574 QTL BSB obesity
Slc13a3 2 165405295 to 165473197 67902 - protein coding gene solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
Tssr27626 2 165407797 to 165407811 14 - TSS region transcription start site region 27626
Gm14437 2 165442264 to 165450485 8221 + antisense lncRNA gene predicted gene 14437
D2Mit288 2 165447193 to 165447391 198 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 288
Cpgi12708 2 165472808 to 165473679 871 CpG island CpG island 12708
Tssr27627 2 165473187 to 165473202 15 - TSS region transcription start site region 27627
D2Dcr126 2 165474449 to 165474545 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 126
Trp53rka 2 165490112 to 165493314 3202 - protein coding gene transformation related protein 53 regulating kinase A
Cpgi12709 2 165492691 to 165493932 1241 CpG island CpG island 12709
Tssr27628 2 165493298 to 165493330 32 - TSS region transcription start site region 27628
Cpgi12710 2 165503592 to 165504099 507 CpG island CpG island 12710
Tssr21725 2 165503894 to 165503913 19 + TSS region transcription start site region 21725
Slc2a10 2 165503897 to 165519917 16020 + protein coding gene solute carrier family 2 (facilitated glucose transporter), member 10
D2Mit289 2 165519743 to 165519871 128 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 289
Tssr21726 2 165530116 to 165530119 3 + TSS region transcription start site region 21726
Cpgi12711 2 165547183 to 165547457 274 CpG island CpG island 12711
Cpgi12712 2 165563160 to 165563932 772 CpG island CpG island 12712
Cpgi12713 2 165594604 to 165595835 1231 CpG island CpG island 12713
Tssr21727 2 165595009 to 165595080 71 + TSS region transcription start site region 21727
Eya2 2 165595032 to 165771727 176695 + protein coding gene EYA transcriptional coactivator and phosphatase 2
Tssr21728 2 165596171 to 165596172 1 + TSS region transcription start site region 21728
Gm28163 2 165601463 to 165601787 324 - lincRNA gene predicted gene 28163
Tssr21729 2 165601790 to 165601835 45 + TSS region transcription start site region 21729
2310061G22Rik 2 165613017 to 165614435 1418 unclassified gene RIKEN cDNA 2310061G22 gene
Tssr21730 2 165655237 to 165655317 80 + TSS region transcription start site region 21730
Tssr21731 2 165655320 to 165655351 31 + TSS region transcription start site region 21731
Gm11460 2 165666497 to 165666857 360 - pseudogene predicted gene 11460
Tssr27629 2 165717586 to 165717591 5 - TSS region transcription start site region 27629
Gm29993 2 165727597 to 165731567 3970 - lncRNA gene predicted gene, 29993
Tssr21732 2 165730084 to 165730096 12 + TSS region transcription start site region 21732
Cpgi12714 2 165742249 to 165742566 317 CpG island CpG island 12714
Zmynd8 2 165784152 to 165898981 114829 - protein coding gene zinc finger, MYND-type containing 8
Tssr761 2 165792813 to 165792816 3 - TSS region transcription start site region 761
Tssr27630 2 165792843 to 165792855 12 - TSS region transcription start site region 27630
Tssr27631 2 165792861 to 165792875 14 - TSS region transcription start site region 27631
Tssr762 2 165793325 to 165793332 7 - TSS region transcription start site region 762
Tssr27632 2 165793336 to 165793362 26 - TSS region transcription start site region 27632
Tssr27633 2 165793371 to 165793380 9 - TSS region transcription start site region 27633
Tssr27634 2 165802543 to 165802557 14 - TSS region transcription start site region 27634
Tssr21733 2 165807528 to 165807575 47 + TSS region transcription start site region 21733
Tssr27635 2 165808273 to 165808289 16 - TSS region transcription start site region 27635
Tssr21734 2 165810239 to 165810247 8 + TSS region transcription start site region 21734
Tssr21735 2 165810251 to 165810294 43 + TSS region transcription start site region 21735
2410087M07Rik 2 165810259 to 165811422 1163 unclassified gene RIKEN cDNA 2410087M07 gene
Tssr21736 2 165810300 to 165810309 9 + TSS region transcription start site region 21736
Nilac3 2 165822973 to 165823099 126 QTL nicotine induced locomotor activity 3
D2Mit311 2 165822973 to 165823099 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 311
Hpdty 2 165822973 to 168781758 2958785 QTL hindlimb polydactyly
Tssr27636 2 165828031 to 165828032 1 - TSS region transcription start site region 27636
Tssr27637 2 165841796 to 165841841 45 - TSS region transcription start site region 27637
Cpgi12715 2 165845589 to 165845900 311 CpG island CpG island 12715
Tssr27638 2 165852066 to 165852086 20 - TSS region transcription start site region 27638
Tssr27639 2 165852202 to 165852219 17 - TSS region transcription start site region 27639
Tssr27640 2 165852554 to 165852562 8 - TSS region transcription start site region 27640
Tssr27641 2 165852608 to 165852624 16 - TSS region transcription start site region 27641
BC046401 2 165857684 to 165859034 1350 + unclassified non-coding RNA gene cDNA sequence BC046401
Tssr27642 2 165858133 to 165858187 54 - TSS region transcription start site region 27642
Tssr27643 2 165861598 to 165861616 18 - TSS region transcription start site region 27643
Cpgi12716 2 165861652 to 165861984 332 CpG island CpG island 12716
Tssr27644 2 165865950 to 165865967 17 - TSS region transcription start site region 27644
Tssr21737 2 165874995 to 165875012 17 + TSS region transcription start site region 21737
Tssr21738 2 165875027 to 165875049 22 + TSS region transcription start site region 21738
Tssr27645 2 165875809 to 165875834 25 - TSS region transcription start site region 27645
Tssr27646 2 165878932 to 165878949 17 - TSS region transcription start site region 27646
Tssr27647 2 165879513 to 165879534 21 - TSS region transcription start site region 27647
Tssr27648 2 165879599 to 165879645 46 - TSS region transcription start site region 27648
Tssr27649 2 165879731 to 165879748 17 - TSS region transcription start site region 27649
Gm11465 2 165880025 to 165882056 2031 + antisense lncRNA gene predicted gene 11465
Tssr27650 2 165884182 to 165884232 50 - TSS region transcription start site region 27650
Tssr27651 2 165884408 to 165884454 46 - TSS region transcription start site region 27651
Tssr27652 2 165884543 to 165884585 42 - TSS region transcription start site region 27652
Tssr27653 2 165884636 to 165884686 50 - TSS region transcription start site region 27653
Tssr27654 2 165884692 to 165884697 5 - TSS region transcription start site region 27654
Tssr21739 2 165884822 to 165884846 24 + TSS region transcription start site region 21739
Tssr27655 2 165885066 to 165885071 5 - TSS region transcription start site region 27655
Tssr27656 2 165885515 to 165885531 16 - TSS region transcription start site region 27656
Tssr27657 2 165885551 to 165885574 23 - TSS region transcription start site region 27657
1810021M19Rik 2 165885745 to 165891068 5323 + lncRNA gene RIKEN cDNA 1810021M19 gene
Tssr27658 2 165885774 to 165885787 13 - TSS region transcription start site region 27658
Tssr27659 2 165898951 to 165898988 37 - TSS region transcription start site region 27659
Tssr27660 2 165899019 to 165899037 18 - TSS region transcription start site region 27660
Tssr21740 2 165900782 to 165900793 11 + TSS region transcription start site region 21740
Tssr27661 2 165900892 to 165900902 10 - TSS region transcription start site region 27661
Tssr27662 2 165900922 to 165900935 13 - TSS region transcription start site region 27662
Gm22692 2 165908051 to 165908175 124 - miRNA gene predicted gene, 22692
Tssr21741 2 165917374 to 165917406 32 + TSS region transcription start site region 21741
Tssr21742 2 165918588 to 165918601 13 + TSS region transcription start site region 21742
Gm11461 2 165925266 to 165925841 575 - pseudogene predicted gene 11461
Tssr21743 2 165948104 to 165948106 2 + TSS region transcription start site region 21743
Tssr27663 2 165949805 to 165949818 13 - TSS region transcription start site region 27663
Gm11462 2 165959789 to 165960350 561 + pseudogene predicted gene 11462
Tssr21744 2 165969099 to 165969112 13 + TSS region transcription start site region 21744
Tssr21745 2 165969661 to 165969688 27 + TSS region transcription start site region 21745
Platr29 2 165973318 to 165981656 8338 - lincRNA gene pluripotency associated transcript 29
Tssr27664 2 165977009 to 165977015 6 - TSS region transcription start site region 27664
Tssr21746 2 165977141 to 165977160 19 + TSS region transcription start site region 21746
Gm11464 2 165980726 to 165992517 11791 - lincRNA gene predicted gene 11464
Tssr27665 2 165982581 to 165982615 34 - TSS region transcription start site region 27665
Tssr27666 2 165983084 to 165983115 31 - TSS region transcription start site region 27666
Tssr21747 2 165983373 to 165983377 4 + TSS region transcription start site region 21747
Cpgi12717 2 165986967 to 165987251 284 CpG island CpG island 12717
Cpgi12718 2 165992124 to 165993722 1598 CpG island CpG island 12718
Tssr21748 2 165992608 to 165992619 11 + TSS region transcription start site region 21748
Tssr21749 2 165992625 to 165992667 42 + TSS region transcription start site region 21749
Ncoa3 2 165992636 to 166073242 80606 + protein coding gene nuclear receptor coactivator 3
Tssr21750 2 165992678 to 165992687 9 + TSS region transcription start site region 21750
Tssr21751 2 165992715 to 165992726 11 + TSS region transcription start site region 21751
Tssr27667 2 165993729 to 165993743 14 - TSS region transcription start site region 27667
Tssr21752 2 165997388 to 165997410 22 + TSS region transcription start site region 21752
Tssr21753 2 166003304 to 166003325 21 + TSS region transcription start site region 21753
Tssr21754 2 166009616 to 166009622 6 + TSS region transcription start site region 21754
Tssr21755 2 166012933 to 166012946 13 + TSS region transcription start site region 21755
Tssr21756 2 166016249 to 166016254 5 + TSS region transcription start site region 21756
Tssr21757 2 166020292 to 166020295 3 + TSS region transcription start site region 21757
Tssr21758 2 166035507 to 166035523 16 + TSS region transcription start site region 21758
Tssr21759 2 166059186 to 166059220 34 + TSS region transcription start site region 21759
Tssr21760 2 166059312 to 166059328 16 + TSS region transcription start site region 21760
Tssr21761 2 166068749 to 166068753 4 + TSS region transcription start site region 21761
Tssr21762 2 166069045 to 166069048 3 + TSS region transcription start site region 21762
Tssr21763 2 166072201 to 166072223 22 + TSS region transcription start site region 21763
Tssr21764 2 166072547 to 166072548 1 + TSS region transcription start site region 21764
Sulf2 2 166073899 to 166155683 81784 - protein coding gene sulfatase 2
Tssr27668 2 166074442 to 166074463 21 - TSS region transcription start site region 27668
Tssr21765 2 166080714 to 166080725 11 + TSS region transcription start site region 21765
Tssr21766 2 166080748 to 166080759 11 + TSS region transcription start site region 21766
Tssr27669 2 166081027 to 166081064 37 - TSS region transcription start site region 27669
Tssr27670 2 166083565 to 166083576 11 - TSS region transcription start site region 27670
Tssr27671 2 166117052 to 166117071 19 - TSS region transcription start site region 27671
Tssr763 2 166117060 to 166117068 8 + TSS region transcription start site region 763
Tssr27672 2 166132678 to 166132705 27 - TSS region transcription start site region 27672
Tssr21767 2 166153995 to 166154036 41 + TSS region transcription start site region 21767
Cpgi12719 2 166154007 to 166155897 1890 CpG island CpG island 12719
Tssr27673 2 166154796 to 166154859 63 - TSS region transcription start site region 27673
Tssr27674 2 166154998 to 166155055 57 - TSS region transcription start site region 27674
Tssr27675 2 166155069 to 166155080 11 - TSS region transcription start site region 27675
Tssr27676 2 166155104 to 166155133 29 - TSS region transcription start site region 27676
Tssr27677 2 166155135 to 166155162 27 - TSS region transcription start site region 27677
Tssr27678 2 166155165 to 166155176 11 - TSS region transcription start site region 27678
Tssr27679 2 166155177 to 166155188 11 - TSS region transcription start site region 27679
Tssr27680 2 166155242 to 166155251 9 - TSS region transcription start site region 27680
Tssr27681 2 166155272 to 166155286 14 - TSS region transcription start site region 27681
Tssr27682 2 166155326 to 166155338 12 - TSS region transcription start site region 27682
Tssr27683 2 166155375 to 166155380 5 - TSS region transcription start site region 27683
Tssr27684 2 166155449 to 166155460 11 - TSS region transcription start site region 27684
Tssr27685 2 166155494 to 166155517 23 - TSS region transcription start site region 27685
Tssr27686 2 166155548 to 166155559 11 - TSS region transcription start site region 27686
Tssr27687 2 166155581 to 166155621 40 - TSS region transcription start site region 27687
Tssr27688 2 166155624 to 166155671 47 - TSS region transcription start site region 27688
Tssr27689 2 166155695 to 166155706 11 - TSS region transcription start site region 27689
Tssr27690 2 166155729 to 166155734 5 - TSS region transcription start site region 27690
Tssr27691 2 166155811 to 166155843 32 - TSS region transcription start site region 27691
Tssr27692 2 166156139 to 166156152 13 - TSS region transcription start site region 27692
Tssr27693 2 166156168 to 166156180 12 - TSS region transcription start site region 27693
Tssr27694 2 166156187 to 166156198 11 - TSS region transcription start site region 27694
Tssr27695 2 166156284 to 166156317 33 - TSS region transcription start site region 27695
Tssr21768 2 166156475 to 166156514 39 + TSS region transcription start site region 21768
Tssr27696 2 166158186 to 166158220 34 - TSS region transcription start site region 27696
Gm30320 2 166162433 to 166182737 20304 + lncRNA gene predicted gene, 30320
Gm22687 2 166189697 to 166189801 104 + rRNA gene predicted gene, 22687
Gm11466 2 166189793 to 166190862 1069 - lincRNA gene predicted gene 11466
Tssr21769 2 166194233 to 166194279 46 + TSS region transcription start site region 21769
Tssr27697 2 166194315 to 166194346 31 - TSS region transcription start site region 27697
Gm30536 2 166194537 to 166201418 6881 + lncRNA gene predicted gene, 30536
Gm11467 2 166207230 to 166208627 1397 - lincRNA gene predicted gene 11467
Gm11468 2 166273908 to 166294831 20923 + lincRNA gene predicted gene 11468
Tssr764 2 166274497 to 166274498 1 + TSS region transcription start site region 764
D2Mit24 2 166276765 to 166276940 175 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 24
Gm30733 2 166277734 to 166286589 8855 - protein coding gene predicted gene, 30733
D2Mit172 2 166296970 to 166297074 104 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 172
D2Dcr127 2 166332773 to 166332869 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 127
D2Mit53 2 166367834 to 166367981 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 53
Gm14268 2 166380828 to 166398187 17359 - lincRNA gene predicted gene 14268
Gct8 2 166394987 to 166395130 143 QTL granulosa cell tumorigenesis 8
D2Mit145 2 166394987 to 166395130 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 145
Tssr27698 2 166398124 to 166398143 19 - TSS region transcription start site region 27698
Tssr27699 2 166398238 to 166398275 37 - TSS region transcription start site region 27699
Gm30796 2 166405195 to 166415064 9869 + lncRNA gene predicted gene, 30796
D2Mit228 2 166416558 to 166416733 175 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 228