Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:165395032-165971727

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bsbob 2 143931525 to 165823099 21891574 QTL BSB obesity
Ocstamp 2 165395450 to 165400394 4944 - protein coding gene osteoclast stimulatory transmembrane protein
Cpgi12705 2 165395616 to 165396324 708 CpG island CpG island 12705
Bwq12 2 165396284 to 165396284 0 QTL body weight QTL 12
Cpgi12706 2 165397392 to 165397885 493 CpG island CpG island 12706
Cpgi12707 2 165399543 to 165399706 163 CpG island CpG island 12707
Tssr27624 2 165400367 to 165400386 19 - TSS region transcription start site region 27624
Tssr27625 2 165400398 to 165400410 12 - TSS region transcription start site region 27625
Slc13a3 2 165405295 to 165473197 67902 - protein coding gene solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
Tssr27626 2 165407797 to 165407811 14 - TSS region transcription start site region 27626
Gm14437 2 165442264 to 165450485 8221 + antisense lncRNA gene predicted gene 14437
D2Mit288 2 165447193 to 165447391 198 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 288
Cpgi12708 2 165472808 to 165473679 871 CpG island CpG island 12708
Tssr27627 2 165473187 to 165473202 15 - TSS region transcription start site region 27627
D2Dcr126 2 165474449 to 165474545 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 126
Trp53rka 2 165490112 to 165493314 3202 - protein coding gene transformation related protein 53 regulating kinase A
Cpgi12709 2 165492691 to 165493932 1241 CpG island CpG island 12709
Tssr27628 2 165493298 to 165493330 32 - TSS region transcription start site region 27628
Cpgi12710 2 165503592 to 165504099 507 CpG island CpG island 12710
Tssr21725 2 165503894 to 165503913 19 + TSS region transcription start site region 21725
Slc2a10 2 165503897 to 165519917 16020 + protein coding gene solute carrier family 2 (facilitated glucose transporter), member 10
D2Mit289 2 165519743 to 165519871 128 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 289
Tssr21726 2 165530116 to 165530119 3 + TSS region transcription start site region 21726
Cpgi12711 2 165547183 to 165547457 274 CpG island CpG island 12711
Cpgi12712 2 165563160 to 165563932 772 CpG island CpG island 12712
Cpgi12713 2 165594604 to 165595835 1231 CpG island CpG island 12713
Tssr21727 2 165595009 to 165595080 71 + TSS region transcription start site region 21727
Eya2 2 165595032 to 165771727 176695 + protein coding gene EYA transcriptional coactivator and phosphatase 2
Tssr21728 2 165596171 to 165596172 1 + TSS region transcription start site region 21728
Gm28163 2 165601463 to 165601787 324 - lincRNA gene predicted gene 28163
Tssr21729 2 165601790 to 165601835 45 + TSS region transcription start site region 21729
2310061G22Rik 2 165613017 to 165614435 1418 unclassified gene RIKEN cDNA 2310061G22 gene
Tssr21730 2 165655237 to 165655317 80 + TSS region transcription start site region 21730
Tssr21731 2 165655320 to 165655351 31 + TSS region transcription start site region 21731
Gm11460 2 165666497 to 165666857 360 - pseudogene predicted gene 11460
Tssr27629 2 165717586 to 165717591 5 - TSS region transcription start site region 27629
Gm29993 2 165727597 to 165731567 3970 - lncRNA gene predicted gene, 29993
Tssr21732 2 165730084 to 165730096 12 + TSS region transcription start site region 21732
Cpgi12714 2 165742249 to 165742566 317 CpG island CpG island 12714
Zmynd8 2 165784152 to 165898981 114829 - protein coding gene zinc finger, MYND-type containing 8
Tssr761 2 165792813 to 165792816 3 - TSS region transcription start site region 761
Tssr27630 2 165792843 to 165792855 12 - TSS region transcription start site region 27630
Tssr27631 2 165792861 to 165792875 14 - TSS region transcription start site region 27631
Tssr762 2 165793325 to 165793332 7 - TSS region transcription start site region 762
Tssr27632 2 165793336 to 165793362 26 - TSS region transcription start site region 27632
Tssr27633 2 165793371 to 165793380 9 - TSS region transcription start site region 27633
Tssr27634 2 165802543 to 165802557 14 - TSS region transcription start site region 27634
Tssr21733 2 165807528 to 165807575 47 + TSS region transcription start site region 21733
Tssr27635 2 165808273 to 165808289 16 - TSS region transcription start site region 27635
Tssr21734 2 165810239 to 165810247 8 + TSS region transcription start site region 21734
Tssr21735 2 165810251 to 165810294 43 + TSS region transcription start site region 21735
2410087M07Rik 2 165810259 to 165811422 1163 unclassified gene RIKEN cDNA 2410087M07 gene
Tssr21736 2 165810300 to 165810309 9 + TSS region transcription start site region 21736
Hpdty 2 165822973 to 168781758 2958785 QTL hindlimb polydactyly
D2Mit311 2 165822973 to 165823099 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 311
Nilac3 2 165822973 to 165823099 126 QTL nicotine induced locomotor activity 3
Tssr27636 2 165828031 to 165828032 1 - TSS region transcription start site region 27636
Tssr27637 2 165841796 to 165841841 45 - TSS region transcription start site region 27637
Cpgi12715 2 165845589 to 165845900 311 CpG island CpG island 12715
Tssr27638 2 165852066 to 165852086 20 - TSS region transcription start site region 27638
Tssr27639 2 165852202 to 165852219 17 - TSS region transcription start site region 27639
Tssr27640 2 165852554 to 165852562 8 - TSS region transcription start site region 27640
Tssr27641 2 165852608 to 165852624 16 - TSS region transcription start site region 27641
BC046401 2 165857684 to 165859034 1350 + unclassified non-coding RNA gene cDNA sequence BC046401
Tssr27642 2 165858133 to 165858187 54 - TSS region transcription start site region 27642
Tssr27643 2 165861598 to 165861616 18 - TSS region transcription start site region 27643
Cpgi12716 2 165861652 to 165861984 332 CpG island CpG island 12716
Tssr27644 2 165865950 to 165865967 17 - TSS region transcription start site region 27644
Tssr21737 2 165874995 to 165875012 17 + TSS region transcription start site region 21737
Tssr21738 2 165875027 to 165875049 22 + TSS region transcription start site region 21738
Tssr27645 2 165875809 to 165875834 25 - TSS region transcription start site region 27645
Tssr27646 2 165878932 to 165878949 17 - TSS region transcription start site region 27646
Tssr27647 2 165879513 to 165879534 21 - TSS region transcription start site region 27647
Tssr27648 2 165879599 to 165879645 46 - TSS region transcription start site region 27648
Tssr27649 2 165879731 to 165879748 17 - TSS region transcription start site region 27649
Gm11465 2 165880025 to 165882056 2031 + antisense lncRNA gene predicted gene 11465
Tssr27650 2 165884182 to 165884232 50 - TSS region transcription start site region 27650
Tssr27651 2 165884408 to 165884454 46 - TSS region transcription start site region 27651
Tssr27652 2 165884543 to 165884585 42 - TSS region transcription start site region 27652
Tssr27653 2 165884636 to 165884686 50 - TSS region transcription start site region 27653
Tssr27654 2 165884692 to 165884697 5 - TSS region transcription start site region 27654
Tssr21739 2 165884822 to 165884846 24 + TSS region transcription start site region 21739
Tssr27655 2 165885066 to 165885071 5 - TSS region transcription start site region 27655
Tssr27656 2 165885515 to 165885531 16 - TSS region transcription start site region 27656
Tssr27657 2 165885551 to 165885574 23 - TSS region transcription start site region 27657
1810021M19Rik 2 165885745 to 165891068 5323 + lncRNA gene RIKEN cDNA 1810021M19 gene
Tssr27658 2 165885774 to 165885787 13 - TSS region transcription start site region 27658
Tssr27659 2 165898951 to 165898988 37 - TSS region transcription start site region 27659
Tssr27660 2 165899019 to 165899037 18 - TSS region transcription start site region 27660
Tssr21740 2 165900782 to 165900793 11 + TSS region transcription start site region 21740
Tssr27661 2 165900892 to 165900902 10 - TSS region transcription start site region 27661
Tssr27662 2 165900922 to 165900935 13 - TSS region transcription start site region 27662
Gm22692 2 165908051 to 165908175 124 - miRNA gene predicted gene, 22692
Tssr21741 2 165917374 to 165917406 32 + TSS region transcription start site region 21741
Tssr21742 2 165918588 to 165918601 13 + TSS region transcription start site region 21742
Gm11461 2 165925266 to 165925841 575 - pseudogene predicted gene 11461
Tssr21743 2 165948104 to 165948106 2 + TSS region transcription start site region 21743
Tssr27663 2 165949805 to 165949818 13 - TSS region transcription start site region 27663
Gm11462 2 165959789 to 165960350 561 + pseudogene predicted gene 11462
Tssr21744 2 165969099 to 165969112 13 + TSS region transcription start site region 21744
Tssr21745 2 165969661 to 165969688 27 + TSS region transcription start site region 21745