Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:164949136-165179163

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmp9 2 164940780 to 164955850 15070 + protein coding gene matrix metallopeptidase 9
Cpgi12679 2 164949088 to 164950499 1411 CpG island CpG island 12679
Cpgi12680 2 164950785 to 164951241 456 CpG island CpG island 12680
Tssr21691 2 164951150 to 164951161 11 + TSS region transcription start site region 21691
Tssr21692 2 164951210 to 164951221 11 + TSS region transcription start site region 21692
Tssr21693 2 164952423 to 164952434 11 + TSS region transcription start site region 21693
Cpgi12681 2 164953114 to 164953661 547 CpG island CpG island 12681
Cpgi12682 2 164960682 to 164961468 786 CpG island CpG island 12682
Tssr21694 2 164960809 to 164960833 24 + TSS region transcription start site region 21694
Slc12a5 2 164960821 to 164999731 38910 + protein coding gene solute carrier family 12, member 5
Tssr21695 2 164960846 to 164960863 17 + TSS region transcription start site region 21695
Gm46776 2 164961064 to 164964371 3307 - lncRNA gene predicted gene, 46776
Cpgi12683 2 164967709 to 164969191 1482 CpG island CpG island 12683
Tssr21696 2 164968166 to 164968180 14 + TSS region transcription start site region 21696
Tssr21697 2 164968219 to 164968255 36 + TSS region transcription start site region 21697
Tssr21698 2 164968264 to 164968317 53 + TSS region transcription start site region 21698
Tssr21699 2 164968320 to 164968323 3 + TSS region transcription start site region 21699
Cpgi12684 2 164969265 to 164969630 365 CpG island CpG island 12684
Cpgi12685 2 164970641 to 164971515 874 CpG island CpG island 12685
Tssr21700 2 164995983 to 164995987 4 + TSS region transcription start site region 21700
Cpgi12686 2 164997080 to 164998311 1231 CpG island CpG island 12686
Ncoa5 2 165000357 to 165034867 34510 - protein coding gene nuclear receptor coactivator 5
Tssr27598 2 165004347 to 165004359 12 - TSS region transcription start site region 27598
Gm19133 2 165004892 to 165006988 2096 - pseudogene predicted gene, 19133
Cpgi12687 2 165033725 to 165035139 1414 CpG island CpG island 12687
Tssr27599 2 165034456 to 165034488 32 - TSS region transcription start site region 27599
Tssr27600 2 165034528 to 165034578 50 - TSS region transcription start site region 27600
Tssr27601 2 165034770 to 165034820 50 - TSS region transcription start site region 27601
Tssr27602 2 165034821 to 165034859 38 - TSS region transcription start site region 27602
Cpgi12688 2 165055599 to 165055761 162 CpG island CpG island 12688
Cd40 2 165055608 to 165071654 16046 + protein coding gene CD40 antigen
Tssr21701 2 165055625 to 165055661 36 + TSS region transcription start site region 21701
Tssr21702 2 165055668 to 165055690 22 + TSS region transcription start site region 21702
Tssr21703 2 165058259 to 165058270 11 + TSS region transcription start site region 21703
Tssr21704 2 165059291 to 165059304 13 + TSS region transcription start site region 21704
Tssr21705 2 165059922 to 165059931 9 + TSS region transcription start site region 21705
Tssr21706 2 165062311 to 165062320 9 + TSS region transcription start site region 21706
Tssr21707 2 165063557 to 165063569 12 + TSS region transcription start site region 21707
Tssr21708 2 165064136 to 165064163 27 + TSS region transcription start site region 21708
Tssr21709 2 165064194 to 165064205 11 + TSS region transcription start site region 21709
Tssr21710 2 165064928 to 165064939 11 + TSS region transcription start site region 21710
Tssr21711 2 165064991 to 165065002 11 + TSS region transcription start site region 21711
Tssr21712 2 165065008 to 165065025 17 + TSS region transcription start site region 21712
Tssr27603 2 165065365 to 165065384 19 - TSS region transcription start site region 27603
Tssr21713 2 165065701 to 165065719 18 + TSS region transcription start site region 21713
Tssr21714 2 165066659 to 165066684 25 + TSS region transcription start site region 21714
Tssr21715 2 165066705 to 165066718 13 + TSS region transcription start site region 21715
Tssr21716 2 165066759 to 165066768 9 + TSS region transcription start site region 21716
Tssr21717 2 165066846 to 165066861 15 + TSS region transcription start site region 21717
Tssr21718 2 165066892 to 165066908 16 + TSS region transcription start site region 21718
Tssr21719 2 165066983 to 165067002 19 + TSS region transcription start site region 21719
Tssr21720 2 165067186 to 165067195 9 + TSS region transcription start site region 21720
Tssr21721 2 165067229 to 165067240 11 + TSS region transcription start site region 21721
Tssr21722 2 165068099 to 165068105 6 + TSS region transcription start site region 21722
Tssr21723 2 165072463 to 165072466 3 + TSS region transcription start site region 21723
1700025C18Rik 2 165078693 to 165090750 12057 - protein coding gene RIKEN cDNA 1700025C18 gene
Tssr21724 2 165081757 to 165081773 16 + TSS region transcription start site region 21724
Tssr27604 2 165090739 to 165090752 13 - TSS region transcription start site region 27604
Gm36690 2 165105715 to 165107334 1619 + lncRNA gene predicted gene, 36690
Cpgi12689 2 165106681 to 165107057 376 CpG island CpG island 12689
Cdh22 2 165111507 to 165234853 123346 - protein coding gene cadherin 22
Cpgi12690 2 165111679 to 165112842 1163 CpG island CpG island 12690
Cpgi12691 2 165116162 to 165116505 343 CpG island CpG island 12691
Tssr27605 2 165135445 to 165135454 9 - TSS region transcription start site region 27605
Cpgi12692 2 165141731 to 165142465 734 CpG island CpG island 12692
Gm14397 2 165159412 to 165163969 4557 + antisense lncRNA gene predicted gene 14397