Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:164888450-165848842

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183 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bsbob 2 143931525 to 165823099 21891574 QTL BSB obesity
Pcif1 2 164879368 to 164891437 12069 + protein coding gene PDX1 C-terminal inhibiting factor 1
Gm46775 2 164887299 to 164891156 3857 - lncRNA gene predicted gene, 46775
Zfp335 2 164891892 to 164911750 19858 - protein coding gene zinc finger protein 335
Cpgi12677 2 164910494 to 164912365 1871 CpG island CpG island 12677
Tssr27593 2 164911175 to 164911210 35 - TSS region transcription start site region 27593
Tssr27594 2 164911218 to 164911239 21 - TSS region transcription start site region 27594
Tssr27595 2 164911258 to 164911299 41 - TSS region transcription start site region 27595
Zfp335os 2 164911354 to 164919953 8599 + antisense lncRNA gene zinc finger protein 335, opposite strand
Tssr21686 2 164911427 to 164911455 28 + TSS region transcription start site region 21686
Tssr27596 2 164911560 to 164911583 23 - TSS region transcription start site region 27596
Tssr27597 2 164911586 to 164911608 22 - TSS region transcription start site region 27597
2210414I22Rik 2 164911889 to 164912932 1043 unclassified gene RIKEN cDNA 2210414I22 gene
Cpgi12678 2 164938440 to 164938976 536 CpG island CpG island 12678
Tssr21687 2 164940742 to 164940765 23 + TSS region transcription start site region 21687
Mmp9 2 164940780 to 164955850 15070 + protein coding gene matrix metallopeptidase 9
Tssr21688 2 164947061 to 164947075 14 + TSS region transcription start site region 21688
Tssr21689 2 164947741 to 164947748 7 + TSS region transcription start site region 21689
D2Dcr116 2 164948060 to 164948171 111 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 116
D2Mit1000 2 164948062 to 164948198 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1000
Tssr21690 2 164948231 to 164948245 14 + TSS region transcription start site region 21690
Cpgi12679 2 164949088 to 164950499 1411 CpG island CpG island 12679
Cpgi12680 2 164950785 to 164951241 456 CpG island CpG island 12680
Tssr21691 2 164951150 to 164951161 11 + TSS region transcription start site region 21691
Tssr21692 2 164951210 to 164951221 11 + TSS region transcription start site region 21692
Tssr21693 2 164952423 to 164952434 11 + TSS region transcription start site region 21693
Cpgi12681 2 164953114 to 164953661 547 CpG island CpG island 12681
Cpgi12682 2 164960682 to 164961468 786 CpG island CpG island 12682
Tssr21694 2 164960809 to 164960833 24 + TSS region transcription start site region 21694
Slc12a5 2 164960821 to 164999731 38910 + protein coding gene solute carrier family 12, member 5
Tssr21695 2 164960846 to 164960863 17 + TSS region transcription start site region 21695
Gm46776 2 164961064 to 164964371 3307 - lncRNA gene predicted gene, 46776
Cpgi12683 2 164967709 to 164969191 1482 CpG island CpG island 12683
Tssr21696 2 164968166 to 164968180 14 + TSS region transcription start site region 21696
Tssr21697 2 164968219 to 164968255 36 + TSS region transcription start site region 21697
Tssr21698 2 164968264 to 164968317 53 + TSS region transcription start site region 21698
Tssr21699 2 164968320 to 164968323 3 + TSS region transcription start site region 21699
Cpgi12684 2 164969265 to 164969630 365 CpG island CpG island 12684
Cpgi12685 2 164970641 to 164971515 874 CpG island CpG island 12685
Tssr21700 2 164995983 to 164995987 4 + TSS region transcription start site region 21700
Cpgi12686 2 164997080 to 164998311 1231 CpG island CpG island 12686
Ncoa5 2 165000357 to 165034867 34510 - protein coding gene nuclear receptor coactivator 5
Tssr27598 2 165004347 to 165004359 12 - TSS region transcription start site region 27598
Gm19133 2 165004892 to 165006988 2096 - pseudogene predicted gene, 19133
Cpgi12687 2 165033725 to 165035139 1414 CpG island CpG island 12687
Tssr27599 2 165034456 to 165034488 32 - TSS region transcription start site region 27599
Tssr27600 2 165034528 to 165034578 50 - TSS region transcription start site region 27600
Tssr27601 2 165034770 to 165034820 50 - TSS region transcription start site region 27601
Tssr27602 2 165034821 to 165034859 38 - TSS region transcription start site region 27602
Cpgi12688 2 165055599 to 165055761 162 CpG island CpG island 12688
Cd40 2 165055608 to 165071654 16046 + protein coding gene CD40 antigen
Tssr21701 2 165055625 to 165055661 36 + TSS region transcription start site region 21701
Tssr21702 2 165055668 to 165055690 22 + TSS region transcription start site region 21702
Tssr21703 2 165058259 to 165058270 11 + TSS region transcription start site region 21703
Tssr21704 2 165059291 to 165059304 13 + TSS region transcription start site region 21704
Tssr21705 2 165059922 to 165059931 9 + TSS region transcription start site region 21705
Tssr21706 2 165062311 to 165062320 9 + TSS region transcription start site region 21706
Tssr21707 2 165063557 to 165063569 12 + TSS region transcription start site region 21707
Tssr21708 2 165064136 to 165064163 27 + TSS region transcription start site region 21708
Tssr21709 2 165064194 to 165064205 11 + TSS region transcription start site region 21709
Tssr21710 2 165064928 to 165064939 11 + TSS region transcription start site region 21710
Tssr21711 2 165064991 to 165065002 11 + TSS region transcription start site region 21711
Tssr21712 2 165065008 to 165065025 17 + TSS region transcription start site region 21712
Tssr27603 2 165065365 to 165065384 19 - TSS region transcription start site region 27603
Tssr21713 2 165065701 to 165065719 18 + TSS region transcription start site region 21713
Tssr21714 2 165066659 to 165066684 25 + TSS region transcription start site region 21714
Tssr21715 2 165066705 to 165066718 13 + TSS region transcription start site region 21715
Tssr21716 2 165066759 to 165066768 9 + TSS region transcription start site region 21716
Tssr21717 2 165066846 to 165066861 15 + TSS region transcription start site region 21717
Tssr21718 2 165066892 to 165066908 16 + TSS region transcription start site region 21718
Tssr21719 2 165066983 to 165067002 19 + TSS region transcription start site region 21719
Tssr21720 2 165067186 to 165067195 9 + TSS region transcription start site region 21720
Tssr21721 2 165067229 to 165067240 11 + TSS region transcription start site region 21721
Tssr21722 2 165068099 to 165068105 6 + TSS region transcription start site region 21722
Tssr21723 2 165072463 to 165072466 3 + TSS region transcription start site region 21723
1700025C18Rik 2 165078693 to 165090750 12057 - protein coding gene RIKEN cDNA 1700025C18 gene
Tssr21724 2 165081757 to 165081773 16 + TSS region transcription start site region 21724
Tssr27604 2 165090739 to 165090752 13 - TSS region transcription start site region 27604
Gm36690 2 165105715 to 165107334 1619 + lncRNA gene predicted gene, 36690
Cpgi12689 2 165106681 to 165107057 376 CpG island CpG island 12689
Cdh22 2 165111507 to 165234853 123346 - protein coding gene cadherin 22
Cpgi12690 2 165111679 to 165112842 1163 CpG island CpG island 12690
Cpgi12691 2 165116162 to 165116505 343 CpG island CpG island 12691
Tssr27605 2 165135445 to 165135454 9 - TSS region transcription start site region 27605
Cpgi12692 2 165141731 to 165142465 734 CpG island CpG island 12692
Gm14397 2 165159412 to 165163969 4557 + antisense lncRNA gene predicted gene 14397
Cpgi12693 2 165180983 to 165181294 311 CpG island CpG island 12693
Cpgi12694 2 165195614 to 165195984 370 CpG island CpG island 12694
Cpgi12695 2 165202086 to 165202257 171 CpG island CpG island 12695
Gm36803 2 165210020 to 165216904 6884 + protein coding gene predicted gene, 36803
Cpgi12696 2 165215680 to 165215857 177 CpG island CpG island 12696
Gm36748 2 165220151 to 165231837 11686 + lncRNA gene predicted gene, 36748
Cpgi12697 2 165233266 to 165235395 2129 CpG island CpG island 12697
Tssr27606 2 165234658 to 165234681 23 - TSS region transcription start site region 27606
Tssr27607 2 165234689 to 165234750 61 - TSS region transcription start site region 27607
Gm25569 2 165270046 to 165270176 130 - snoRNA gene predicted gene, 25569
Slc35c2 2 165276554 to 165287869 11315 - protein coding gene solute carrier family 35, member C2
Tssr27608 2 165283599 to 165283620 21 - TSS region transcription start site region 27608
Tssr27609 2 165283648 to 165283655 7 - TSS region transcription start site region 27609
Tssr27610 2 165283656 to 165283683 27 - TSS region transcription start site region 27610
Tssr27611 2 165283711 to 165283725 14 - TSS region transcription start site region 27611
Tssr27612 2 165283768 to 165283789 21 - TSS region transcription start site region 27612
Tssr27613 2 165286543 to 165286560 17 - TSS region transcription start site region 27613
Tssr27614 2 165286913 to 165286933 20 - TSS region transcription start site region 27614
Cpgi12698 2 165287308 to 165287976 668 CpG island CpG island 12698
Tssr27615 2 165287802 to 165287845 43 - TSS region transcription start site region 27615
Tssr27616 2 165287853 to 165287863 10 - TSS region transcription start site region 27616
Elmo2 2 165288031 to 165326479 38448 - protein coding gene engulfment and cell motility 2
Tssr27617 2 165297451 to 165297485 34 - TSS region transcription start site region 27617
Cpgi12699 2 165311522 to 165311784 262 CpG island CpG island 12699
Cpgi12700 2 165325777 to 165327202 1425 CpG island CpG island 12700
Tssr27618 2 165326435 to 165326486 51 - TSS region transcription start site region 27618
Zfp663 2 165351297 to 165368729 17432 - protein coding gene zinc finger protein 663
Cpgi12701 2 165364140 to 165364581 441 CpG island CpG island 12701
Gm29831 2 165366875 to 165368639 1764 + lncRNA gene predicted gene, 29831
Cpgi12702 2 165368450 to 165368842 392 CpG island CpG island 12702
Tssr27619 2 165368702 to 165368714 12 - TSS region transcription start site region 27619
Tssr27620 2 165368723 to 165368747 24 - TSS region transcription start site region 27620
D2Mit527 2 165369714 to 165369807 93 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 527
Cpgi12703 2 165373846 to 165374005 159 CpG island CpG island 12703
Zfp334 2 165377434 to 165388317 10883 - protein coding gene zinc finger protein 334
Tssr27621 2 165387036 to 165387048 12 - TSS region transcription start site region 27621
Cpgi12704 2 165387880 to 165388436 556 CpG island CpG island 12704
Tssr27622 2 165388216 to 165388232 16 - TSS region transcription start site region 27622
Tssr27623 2 165388245 to 165388315 70 - TSS region transcription start site region 27623
Ocstamp 2 165395450 to 165400394 4944 - protein coding gene osteoclast stimulatory transmembrane protein
Cpgi12705 2 165395616 to 165396324 708 CpG island CpG island 12705
Bwq12 2 165396284 to 165396284 0 QTL body weight QTL 12
Cpgi12706 2 165397392 to 165397885 493 CpG island CpG island 12706
Cpgi12707 2 165399543 to 165399706 163 CpG island CpG island 12707
Tssr27624 2 165400367 to 165400386 19 - TSS region transcription start site region 27624
Tssr27625 2 165400398 to 165400410 12 - TSS region transcription start site region 27625
Slc13a3 2 165405295 to 165473197 67902 - protein coding gene solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
Tssr27626 2 165407797 to 165407811 14 - TSS region transcription start site region 27626
Gm14437 2 165442264 to 165450485 8221 + antisense lncRNA gene predicted gene 14437
D2Mit288 2 165447193 to 165447391 198 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 288
Cpgi12708 2 165472808 to 165473679 871 CpG island CpG island 12708
Tssr27627 2 165473187 to 165473202 15 - TSS region transcription start site region 27627
D2Dcr126 2 165474449 to 165474545 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 126
Trp53rka 2 165490112 to 165493314 3202 - protein coding gene transformation related protein 53 regulating kinase A
Cpgi12709 2 165492691 to 165493932 1241 CpG island CpG island 12709
Tssr27628 2 165493298 to 165493330 32 - TSS region transcription start site region 27628
Cpgi12710 2 165503592 to 165504099 507 CpG island CpG island 12710
Tssr21725 2 165503894 to 165503913 19 + TSS region transcription start site region 21725
Slc2a10 2 165503897 to 165519917 16020 + protein coding gene solute carrier family 2 (facilitated glucose transporter), member 10
D2Mit289 2 165519743 to 165519871 128 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 289
Tssr21726 2 165530116 to 165530119 3 + TSS region transcription start site region 21726
Cpgi12711 2 165547183 to 165547457 274 CpG island CpG island 12711
Cpgi12712 2 165563160 to 165563932 772 CpG island CpG island 12712
Cpgi12713 2 165594604 to 165595835 1231 CpG island CpG island 12713
Tssr21727 2 165595009 to 165595080 71 + TSS region transcription start site region 21727
Eya2 2 165595032 to 165771727 176695 + protein coding gene EYA transcriptional coactivator and phosphatase 2
Tssr21728 2 165596171 to 165596172 1 + TSS region transcription start site region 21728
Gm28163 2 165601463 to 165601787 324 - lincRNA gene predicted gene 28163
Tssr21729 2 165601790 to 165601835 45 + TSS region transcription start site region 21729
2310061G22Rik 2 165613017 to 165614435 1418 unclassified gene RIKEN cDNA 2310061G22 gene
Tssr21730 2 165655237 to 165655317 80 + TSS region transcription start site region 21730
Tssr21731 2 165655320 to 165655351 31 + TSS region transcription start site region 21731
Gm11460 2 165666497 to 165666857 360 - pseudogene predicted gene 11460
Tssr27629 2 165717586 to 165717591 5 - TSS region transcription start site region 27629
Gm29993 2 165727597 to 165731567 3970 - lncRNA gene predicted gene, 29993
Tssr21732 2 165730084 to 165730096 12 + TSS region transcription start site region 21732
Cpgi12714 2 165742249 to 165742566 317 CpG island CpG island 12714
Zmynd8 2 165784152 to 165898981 114829 - protein coding gene zinc finger, MYND-type containing 8
Tssr761 2 165792813 to 165792816 3 - TSS region transcription start site region 761
Tssr27630 2 165792843 to 165792855 12 - TSS region transcription start site region 27630
Tssr27631 2 165792861 to 165792875 14 - TSS region transcription start site region 27631
Tssr762 2 165793325 to 165793332 7 - TSS region transcription start site region 762
Tssr27632 2 165793336 to 165793362 26 - TSS region transcription start site region 27632
Tssr27633 2 165793371 to 165793380 9 - TSS region transcription start site region 27633
Tssr27634 2 165802543 to 165802557 14 - TSS region transcription start site region 27634
Tssr21733 2 165807528 to 165807575 47 + TSS region transcription start site region 21733
Tssr27635 2 165808273 to 165808289 16 - TSS region transcription start site region 27635
Tssr21734 2 165810239 to 165810247 8 + TSS region transcription start site region 21734
Tssr21735 2 165810251 to 165810294 43 + TSS region transcription start site region 21735
2410087M07Rik 2 165810259 to 165811422 1163 unclassified gene RIKEN cDNA 2410087M07 gene
Tssr21736 2 165810300 to 165810309 9 + TSS region transcription start site region 21736
Nilac3 2 165822973 to 165823099 126 QTL nicotine induced locomotor activity 3
Hpdty 2 165822973 to 168781758 2958785 QTL hindlimb polydactyly
D2Mit311 2 165822973 to 165823099 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 311
Tssr27636 2 165828031 to 165828032 1 - TSS region transcription start site region 27636
Tssr27637 2 165841796 to 165841841 45 - TSS region transcription start site region 27637
Cpgi12715 2 165845589 to 165845900 311 CpG island CpG island 12715