Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:164861560-164961583

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit227 2 164869474 to 164869584 110 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 227
D2Mit342 2 164869485 to 164869576 91 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 342
4930445K14Rik 2 164878287 to 164883451 5164 - protein coding gene RIKEN cDNA 4930445K14 gene
Cpgi12676 2 164878731 to 164880313 1582 CpG island CpG island 12676
Tssr21683 2 164879358 to 164879398 40 + TSS region transcription start site region 21683
Pcif1 2 164879368 to 164891437 12069 + protein coding gene PDX1 C-terminal inhibiting factor 1
Tssr27592 2 164879735 to 164879804 69 - TSS region transcription start site region 27592
Tssr21684 2 164880016 to 164880039 23 + TSS region transcription start site region 21684
Tssr21685 2 164880045 to 164880061 16 + TSS region transcription start site region 21685
Gm46775 2 164887299 to 164891156 3857 - lncRNA gene predicted gene, 46775
Zfp335 2 164891892 to 164911750 19858 - protein coding gene zinc finger protein 335
Cpgi12677 2 164910494 to 164912365 1871 CpG island CpG island 12677
Tssr27593 2 164911175 to 164911210 35 - TSS region transcription start site region 27593
Tssr27594 2 164911218 to 164911239 21 - TSS region transcription start site region 27594
Tssr27595 2 164911258 to 164911299 41 - TSS region transcription start site region 27595
Zfp335os 2 164911354 to 164919953 8599 + antisense lncRNA gene zinc finger protein 335, opposite strand
Tssr21686 2 164911427 to 164911455 28 + TSS region transcription start site region 21686
Tssr27596 2 164911560 to 164911583 23 - TSS region transcription start site region 27596
Tssr27597 2 164911586 to 164911608 22 - TSS region transcription start site region 27597
2210414I22Rik 2 164911889 to 164912932 1043 unclassified gene RIKEN cDNA 2210414I22 gene
Cpgi12678 2 164938440 to 164938976 536 CpG island CpG island 12678
Tssr21687 2 164940742 to 164940765 23 + TSS region transcription start site region 21687
Mmp9 2 164940780 to 164955850 15070 + protein coding gene matrix metallopeptidase 9
Tssr21688 2 164947061 to 164947075 14 + TSS region transcription start site region 21688
Tssr21689 2 164947741 to 164947748 7 + TSS region transcription start site region 21689
D2Dcr116 2 164948060 to 164948171 111 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 116
D2Mit1000 2 164948062 to 164948198 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1000
Tssr21690 2 164948231 to 164948245 14 + TSS region transcription start site region 21690
Cpgi12679 2 164949088 to 164950499 1411 CpG island CpG island 12679
Cpgi12680 2 164950785 to 164951241 456 CpG island CpG island 12680
Tssr21691 2 164951150 to 164951161 11 + TSS region transcription start site region 21691
Tssr21692 2 164951210 to 164951221 11 + TSS region transcription start site region 21692
Tssr21693 2 164952423 to 164952434 11 + TSS region transcription start site region 21693
Cpgi12681 2 164953114 to 164953661 547 CpG island CpG island 12681
Cpgi12682 2 164960682 to 164961468 786 CpG island CpG island 12682
Tssr21694 2 164960809 to 164960833 24 + TSS region transcription start site region 21694
Slc12a5 2 164960821 to 164999731 38910 + protein coding gene solute carrier family 12, member 5
Tssr21695 2 164960846 to 164960863 17 + TSS region transcription start site region 21695
Gm46776 2 164961064 to 164964371 3307 - lncRNA gene predicted gene, 46776